Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Forward (+)

7972723 .. 7980500

Gene Structure 7778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG090600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCCAACTGGGTTGTGCAGAAAAATGGCAGAAGTTCTCGATAGTCAAAAACCCATCTTCTTTAGCTATGTTGCTGTGCTTATTGTGCTTATTTGCGTTATCAATTCTCAAGCACAATCTGGGACTCCTGCACCTGATGAAGTGGAAGCCCTTCGTGAAATAGCTGAACAACTGAATAAGGAGGACTGGAATTTCAGTGATCCATGTAGCAATGTTCCAACTTTTTCGAGCCCACATACCGATCAGTACAACAATACTCTTGTCTGCAATTGCTCATTCTCCGGCAATGTATGCCACATTCAAAGCATTAATCTTACTGGTCAGGATCTAGATGGTGTTCTTCCAGCATCACTGGCTAAGCTACCTTATCTTAAGCAAGTCTATCTTCGTGCTAACAATCTCACTGGAGAGTTGCCTGTGGCTCTCACTAATCTGACCAAATTAAAAGTACTTCAGATAGGTAGTAACAACTTCACTGGAAGAATACCGAACTACTTTCAAAGTTGGAAAGACCTCCAAAACTTATATTTGACAAGTAACTTGCTTACTGGGCTTCCAGACTGGATCAAAAGTAGAGACAGTCGCTACAATATAGATATCTCCTACAATAACTTCTCTCAGAGCTCTGTCCCACCAACTTGTCGAGAAACTTTCAATTGGTTCAGAAGTATTTCCCAACAGAACAACTTAATACTAAGCAATTGCCTCAAGTCATGTTCAAAAGGGAATGAGCAACGCATGCATCATTTGAATAAAGACAAACTAGTATTGAAGGATTTTGATATTACAAAGGAAGCACTAGGGGTTGATAAGGACGTGATCAAGGTATTTAAAGCAGTTGTTAATGTTAAGACTTTACTGATCCGCTTTCAGTGGGCTGGGAGAGGGACAACTAATGTTCCACTAAGAGGAAAATATGGTTCTCTTATATCAACCATCTCAGTGCAGTCTGAGGCTGTTTCGGACACAAGACAACCAGGGAAGAAGGTTGATCTGTTTATTTATTTGACAATAACTTCATTATTAGCAACCTTGCATCCTAAGTATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

350

Amino Acids

39.27

Weight (kDa)

8.85

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	253 - 313	8.4e-07	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	865
AclWI	GGATC	4 cut(s)	194, 333, 572, 856
AcsI	RAATTY	1 cut(s)	190
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	2 cut(s)	248, 450
AfiI	CCNNNNNNNGG	1 cut(s)	908
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	6 cut(s)	302, 500, 655, 720, 751, 772
AhlI	ACTAGT	1 cut(s)	763
AjiI	CACGTC	1 cut(s)	817
AjnI	CCWGG	1 cut(s)	976
AluBI	AGCT	4 cut(s)	66, 164, 361, 624
AluI	AGCT	4 cut(s)	66, 164, 361, 624
Alw21I	GWGCWC	1 cut(s)	626
Alw26I	GTCTC	1 cut(s)	570
AlwI	GGATC	4 cut(s)	194, 333, 572, 856
ApoI	RAATTY	1 cut(s)	190
AseI	ATTAAT	1 cut(s)	309
Asp700I	GAANNNNTTC	2 cut(s)	150, 670
BanII	GRGCYC	2 cut(s)	233, 626
Bbv12I	GWGCWC	1 cut(s)	626
BccI	CCATC	3 cut(s)	62, 326, 944
BciT130I	CCWGG	1 cut(s)	978
BclI	TGATCA	1 cut(s)	819
BcoDI	GTCTC	1 cut(s)	570
BcuI	ACTAGT	1 cut(s)	763
BfaI	CTAG	3 cut(s)	329, 764, 800
BfrI	CTTAAG	1 cut(s)	371
BlpI	GCTNAGC	1 cut(s)	357
BmcAI	AGTACT	1 cut(s)	450
Bme1390I	CCNGG	1 cut(s)	978
BmgBI	CACGTC	1 cut(s)	817
BmrFI	CCNGG	1 cut(s)	978
BmrI	ACTGGG	2 cut(s)	18, 558
BmsI	GCATC	3 cut(s)	356, 751, 1045
BmuI	ACTGGG	2 cut(s)	18, 558
BpmI	CTGGAG	1 cut(s)	426
Bpu1102I	GCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	2 cut(s)	93, 692
BsaJI	CCNNGG	1 cut(s)	977
Bsc4I	CCNNNNNNNGG	1 cut(s)	908
Bse1I	ACTGG	8 cut(s)	13, 191, 322, 357, 409, 481, 553, 566
Bse3DI	GCAATG	2 cut(s)	217, 292
BseBI	CCWGG	1 cut(s)	978
BseDI	CCNNGG	1 cut(s)	977
BseGI	GGATG	1 cut(s)	1036
BseLI	CCNNNNNNNGG	1 cut(s)	908
BseMI	GCAATG	2 cut(s)	217, 292
BseMII	CTCAG	3 cut(s)	632, 942, 954
BseNI	ACTGG	8 cut(s)	13, 191, 322, 357, 409, 481, 553, 566
BseYI	CCCAGC	1 cut(s)	878
BsgI	GTGCAG	3 cut(s)	37, 114, 965
BsiHKAI	GWGCWC	1 cut(s)	626
BsiSI	CCGG	1 cut(s)	282
BslFI	GGGAC	3 cut(s)	136, 614, 901
BslI	CCNNNNNNNGG	1 cut(s)	908
BsmAI	GTCTC	1 cut(s)	570
BsmFI	GGGAC	3 cut(s)	136, 614, 901
Bsp1286I	GDGCHC	2 cut(s)	233, 626
Bsp143I	GATC	7 cut(s)	199, 241, 325, 564, 819, 861, 991
Bsp1720I	GCTNAGC	1 cut(s)	357
BspACI	CCGC	1 cut(s)	865
BspCNI	CTCAG	3 cut(s)	631, 943, 953
BspPI	GGATC	4 cut(s)	194, 333, 572, 856
BspTI	CTTAAG	1 cut(s)	371
BsrDI	GCAATG	2 cut(s)	217, 292
BsrI	ACTGG	8 cut(s)	13, 191, 322, 357, 409, 481, 553, 566
BssECI	CCNNGG	1 cut(s)	977
BssMI	GATC	7 cut(s)	199, 241, 325, 564, 819, 861, 991
Bst2UI	CCWGG	1 cut(s)	978
Bst4CI	ACNGT	1 cut(s)	581
BstAFI	CTTAAG	1 cut(s)	371
BstAPI	GCANNNNNTGC	2 cut(s)	291, 739
BstC8I	GCNNGC	1 cut(s)	740
BstDEI	CTNAG	7 cut(s)	357, 618, 695, 905, 940, 951, 1041
BstF5I	GGATG	1 cut(s)	1036
BstKTI	GATC	7 cut(s)	202, 244, 328, 567, 822, 864, 994
BstMAI	GTCTC	1 cut(s)	570
BstMBI	GATC	7 cut(s)	199, 241, 325, 564, 819, 861, 991
BstMWI	GCNNNNNNNGC	5 cut(s)	85, 291, 353, 550, 739
BstNI	CCWGG	1 cut(s)	978
BstNSI	RCATGY	1 cut(s)	742
BstSCI	CCNGG	1 cut(s)	976
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BtrI	CACGTC	1 cut(s)	817
BtsCI	GGATG	1 cut(s)	1036
BtsIMutI	CAGTG	6 cut(s)	202, 350, 402, 474, 878, 948
Cac8I	GCNNGC	1 cut(s)	740
Csp6I	GTAC	2 cut(s)	247, 449
CviAII	CATG	3 cut(s)	204, 714, 739
CviQI	GTAC	2 cut(s)	247, 449
DdeI	CTNAG	7 cut(s)	357, 618, 695, 905, 940, 951, 1041
DpnI	GATC	7 cut(s)	201, 243, 327, 566, 821, 863, 993
DpnII	GATC	7 cut(s)	199, 241, 325, 564, 819, 861, 991
DraI	TTTAAA	1 cut(s)	832
Ecl136II	GAGCTC	1 cut(s)	624
Eco24I	GRGCYC	2 cut(s)	233, 626
Eco32I	GATATC	1 cut(s)	598
Eco53kI	GAGCTC	1 cut(s)	624
Eco57I	CTGAAG	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	624
EcoRII	CCWGG	1 cut(s)	976
EcoRV	GATATC	1 cut(s)	598
EcoT22I	ATGCAT	1 cut(s)	744
EcoT38I	GRGCYC	2 cut(s)	233, 626
FaeI	CATG	3 cut(s)	207, 717, 742
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FaqI	GGGAC	3 cut(s)	136, 614, 901
FatI	CATG	3 cut(s)	203, 713, 738
FbaI	TGATCA	1 cut(s)	819
FokI	GGATG	1 cut(s)	1023
FriOI	GRGCYC	2 cut(s)	233, 626
FspBI	CTAG	3 cut(s)	329, 764, 800
GsaI	CCCAGC	1 cut(s)	882
GsuI	CTGGAG	1 cut(s)	426
HapII	CCGG	1 cut(s)	282
Hin1II	CATG	3 cut(s)	207, 717, 742
HinfI	GANTC	1 cut(s)	124
HpaII	CCGG	1 cut(s)	282
Hpy188I	TCNGA	6 cut(s)	435, 456, 621, 665, 952, 964
Hpy188III	TCNNGA	6 cut(s)	38, 155, 323, 329, 557, 644
HpyAV	CCTTC	3 cut(s)	161, 766, 979
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4IV	ACGT	1 cut(s)	816
HpyCH4V	TGCA	6 cut(s)	18, 131, 267, 742, 946, 1036
HpyF10VI	GCNNNNNNNGC	5 cut(s)	85, 291, 353, 550, 739
HpyF3I	CTNAG	7 cut(s)	357, 618, 695, 905, 940, 951, 1041
HpySE526I	ACGT	1 cut(s)	816
Hsp92II	CATG	3 cut(s)	207, 717, 742
Ksp22I	TGATCA	1 cut(s)	819
Kzo9I	GATC	7 cut(s)	199, 241, 325, 564, 819, 861, 991
LweI	GCATC	3 cut(s)	356, 751, 1045
MaeI	CTAG	3 cut(s)	329, 764, 800
MaeII	ACGT	1 cut(s)	816
MaeIII	GTNAC	2 cut(s)	464, 536
MalI	GATC	7 cut(s)	201, 243, 327, 566, 821, 863, 993
MboI	GATC	7 cut(s)	199, 241, 325, 564, 819, 861, 991
MboII	GAAGA	5 cut(s)	49, 332, 377, 492, 994
MfeI	CAATTG	3 cut(s)	268, 655, 700
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	2 cut(s)	233, 626
MluCI	AATT	6 cut(s)	103, 190, 268, 440, 655, 700
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	2 cut(s)	242, 485
MnlI	CCTC	6 cut(s)	175, 524, 716, 878, 902, 946
Mph1103I	ATGCAT	1 cut(s)	744
MroXI	GAANNNNTTC	2 cut(s)	150, 670
MseI	TTAA	7 cut(s)	309, 372, 443, 689, 831, 843, 849
MslI	CAYNNNNRTG	1 cut(s)	941
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	1 cut(s)	978
MunI	CAATTG	3 cut(s)	268, 655, 700
MvaI	CCWGG	1 cut(s)	978
MwoI	GCNNNNNNNGC	5 cut(s)	85, 291, 353, 550, 739
NdeII	GATC	7 cut(s)	199, 241, 325, 564, 819, 861, 991
NlaIII	CATG	3 cut(s)	207, 717, 742
NsiI	ATGCAT	1 cut(s)	744
NspI	RCATGY	1 cut(s)	742
PaeI	GCATGC	1 cut(s)	742
PdmI	GAANNNNTTC	2 cut(s)	150, 670
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PshBI	ATTAAT	1 cut(s)	309
Psp124BI	GAGCTC	1 cut(s)	626
Psp6I	CCWGG	1 cut(s)	976
PspFI	CCCAGC	1 cut(s)	878
PspGI	CCWGG	1 cut(s)	976
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	2 cut(s)	248, 450
RsaNI	GTAC	2 cut(s)	247, 449
RseI	CAYNNNNRTG	1 cut(s)	941
SacI	GAGCTC	1 cut(s)	626
SaqAI	TTAA	7 cut(s)	309, 372, 443, 689, 831, 843, 849
Sau3AI	GATC	7 cut(s)	199, 241, 325, 564, 819, 861, 991
ScaI	AGTACT	1 cut(s)	450
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	978
SduI	GDGCHC	2 cut(s)	233, 626
SfaNI	GCATC	3 cut(s)	356, 751, 1045
SmiMI	CAYNNNNRTG	1 cut(s)	941
SmlI	CTYRAG	3 cut(s)	108, 371, 707
SmoI	CTYRAG	3 cut(s)	108, 371, 707
SpeI	ACTAGT	1 cut(s)	763
SphI	GCATGC	1 cut(s)	742
Sse9I	AATT	6 cut(s)	103, 190, 268, 440, 655, 700
SsiI	CCGC	1 cut(s)	865
SspMI	CTAG	3 cut(s)	329, 764, 800
SstI	GAGCTC	1 cut(s)	626
StyD4I	CCNGG	1 cut(s)	976
TaaI	ACNGT	1 cut(s)	581
TaiI	ACGT	1 cut(s)	819
TaqI	TCGA	3 cut(s)	39, 227, 643
TasI	AATT	6 cut(s)	103, 190, 268, 440, 655, 700
TatI	WGTACW	2 cut(s)	246, 448
Tru1I	TTAA	7 cut(s)	309, 372, 443, 689, 831, 843, 849
Tru9I	TTAA	7 cut(s)	309, 372, 443, 689, 831, 843, 849
TscAI	CASTG	6 cut(s)	202, 357, 409, 481, 878, 948
TspDTI	ATGAA	2 cut(s)	153, 1008
TspRI	CASTG	6 cut(s)	202, 357, 409, 481, 878, 948
Vha464I	CTTAAG	1 cut(s)	371
VspI	ATTAAT	1 cut(s)	309
XapI	RAATTY	1 cut(s)	190
XbaI	TCTAGA	1 cut(s)	328
XceI	RCATGY	1 cut(s)	742
XmnI	GAANNNNTTC	2 cut(s)	150, 670
XspI	CTAG	3 cut(s)	329, 764, 800
ZrmI	AGTACT	1 cut(s)	450
Zsp2I	ATGCAT	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.