Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Reverse (-)

1327130 .. 1327703

Gene Structure 574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g01471.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGTGAGAATTTATAGGAACGATGTCATCTTCATATTGCTCATTTGCATGGCACAAGTCACATTGGAAGCAGGTGCCATGACTCTTCCAGCTGACGAGGTGCAAGCCCTTCATGAAATTGCTGAGCAACTCAACAAAAAGGACTGGAATTTGAGCGACCCATGTAGAAATATTCCAACTTTCTCAATTCCACATACGGATCAGTACAACAACACCCTCTTCTGCAACTGTTCCTTCCCCGGCAACGTGTGCCATGTCCAAACCATGTTTCTTGTGGGTCAAGACCTCGATGGTGTGCTTCCACCATCACTGGTGAAGCTACCGTACCTCAAGGAACTGTATGTTTCTGACTTCATAGCTTTAATTTCTAGTATTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

127

Amino Acids

14.24

Weight (kDa)

4.73

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	62
Acc36I	ACCTGC	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	74
AclWI	GGATC	1 cut(s)	207
AcsI	RAATTY	2 cut(s)	9, 148
AfaI	GTAC	2 cut(s)	206, 326
AflIII	ACRYGT	1 cut(s)	246
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AluBI	AGCT	3 cut(s)	92, 319, 359
AluI	AGCT	3 cut(s)	92, 319, 359
AlwI	GGATC	1 cut(s)	207
ApoI	RAATTY	2 cut(s)	9, 148
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	2 cut(s)	16, 325
BanI	GGYRCC	1 cut(s)	74
BarI	GAAGNNNNNNTAC	2 cut(s)	308, 340
BccI	CCATC	2 cut(s)	284, 313
BcnI	CCSGG	1 cut(s)	240
BfaI	CTAG	2 cut(s)	369, 379
BfuAI	ACCTGC	1 cut(s)	62
BlpI	GCTNAGC	1 cut(s)	123
Bme1390I	CCNGG	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	240
Bpu1102I	GCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	238
Bse1I	ACTGG	2 cut(s)	149, 315
BseDI	CCNNGG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	2 cut(s)	149, 315
BshNI	GGYRCC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	199
Bsp1720I	GCTNAGC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	115
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	62
BspPI	GGATC	1 cut(s)	207
BspT107I	GGYRCC	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	149, 315
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	1 cut(s)	199
Bst4CI	ACNGT	3 cut(s)	230, 324, 339
Bst6I	CTCTTC	2 cut(s)	90, 224
BstAPI	GCANNNNNTGC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	123
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	308
BveI	ACCTGC	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	105
CciI	TCATGA	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	205, 325
CviAII	CATG	6 cut(s)	49, 79, 113, 162, 254, 265
CviJI	RGCY	4 cut(s)	92, 107, 319, 359
CviKI_1	RGCY	4 cut(s)	92, 107, 319, 359
CviQI	GTAC	2 cut(s)	205, 325
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eam1104I	CTCTTC	2 cut(s)	90, 224
EarI	CTCTTC	2 cut(s)	90, 224
FaeI	CATG	6 cut(s)	52, 82, 116, 165, 257, 268
FatI	CATG	6 cut(s)	48, 78, 112, 161, 253, 264
FspBI	CTAG	2 cut(s)	369, 379
HapII	CCGG	1 cut(s)	240
Hin1II	CATG	6 cut(s)	52, 82, 116, 165, 257, 268
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	2 cut(s)	16, 325
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	2 cut(s)	113, 281
HpyAV	CCTTC	2 cut(s)	119, 244
HpyCH4III	ACNGT	3 cut(s)	230, 324, 339
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	3 cut(s)	48, 103, 225
HpyF10VI	GCNNNNNNNGC	1 cut(s)	249
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	6 cut(s)	52, 82, 116, 165, 257, 268
Kzo9I	GATC	1 cut(s)	199
LpnPI	CCDG	5 cut(s)	57, 102, 130, 253, 296
MaeI	CTAG	2 cut(s)	369, 379
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	3 cut(s)	22, 77, 211
MluCI	AATT	5 cut(s)	9, 117, 148, 186, 363
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	4 cut(s)	91, 227, 296, 338
MseI	TTAA	1 cut(s)	362
MslI	CAYNNNNRTG	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	249
NciI	CCSGG	1 cut(s)	240
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	6 cut(s)	52, 82, 116, 165, 257, 268
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	58
PagI	TCATGA	1 cut(s)	112
PaqCI	CACCTGC	1 cut(s)	62
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	92
RsaI	GTAC	2 cut(s)	206, 326
RsaNI	GTAC	2 cut(s)	205, 325
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	362
Sau3AI	GATC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	240
SetI	ASST	8 cut(s)	76, 94, 102, 249, 288, 321, 330, 361
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	5 cut(s)	9, 117, 148, 186, 363
SspI	AATATT	1 cut(s)	172
SspMI	CTAG	2 cut(s)	369, 379
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	3 cut(s)	230, 324, 339
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	1 cut(s)	288
TasI	AATT	5 cut(s)	9, 117, 148, 186, 363
TatI	WGTACW	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	4 cut(s)	22, 101, 129, 343
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	315
XapI	RAATTY	2 cut(s)	9, 148
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XspI	CTAG	2 cut(s)	369, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.