Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Forward (+)

40343014 .. 40351005

Gene Structure 7992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00315760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAAGATGGCTATTAGAGTTGGAGTTGGTGTTTGGAAAACCATCATGAACCTCAACTTGGCGATGATACTAGTTCACTGCAGTTTTGGATCAGTCAAAGTTCAAGCTCTTTCGACTCGTCTTCCTGATACTGAAGTGCAAGCCCTCCGAGAAATTGCTACACAGATAGGGAAAAAAGACTGGGACTTCAAAGTAGACCCGTGCCTGAATGACACAACCCACACAAGCTGGGCTACTCCAAAGTCTGCTGACAGGCCTCTATTCAATAACACTCTCATTTGCAACTGCTCCTTCCCTGATGGCTCATGCCACGTCACCAACATAATTCTTACAGGGCAAGATCTTGCTGGTGTACTTCCACCATCTATTGCAAAGTTACCCTACCTTACAAAAATGAGTTTAGAGACAAACATGTTTACTGGAACTGTTCCTCCTGAACTTGGGAAGTTGGTTAACTTACAAAATCTGAGGATTAGCAGTAACAACTTCACTGGAAGAATTCCAGACTTTTTCCGAAGTTGGAGTCAACTTATAAAATTAAGGATCAGCGACTTAAACGAAGGGGGTTCAGTATTTCCAAACTTGACTAACATGAAAAGCATGAAAAGATTAGATCTCAGCTTCAACAAATTGGAAGGAAGTTTTCCGGATCTTGAAGCTATAGCTCTGGATCCGAACAATTTGCAGTACTTCCAGATAGATGTTTCTTACAATAATTTTTCCAAGGACTCTCAGCCAACTACATGTAGCGCATACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

253

Amino Acids

28.19

Weight (kDa)

8.18

Isoelectric Point (pI)

30.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	533
AccI	GTMKAC	1 cut(s)	195
AccIII	TCCGGA	1 cut(s)	646
AclWI	GGATC	5 cut(s)	97, 551, 657, 665, 678
AcsI	RAATTY	1 cut(s)	498
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	2 cut(s)	354, 689
AfiI	CCNNNNNNNGG	2 cut(s)	58, 440
AflIII	ACRYGT	2 cut(s)	411, 743
AgsI	TTSAA	5 cut(s)	104, 190, 265, 625, 656
AhlI	ACTAGT	1 cut(s)	70
AjiI	CACGTC	1 cut(s)	313
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AloI	GAACNNNNNNTCC	2 cut(s)	415, 447
AluBI	AGCT	5 cut(s)	107, 228, 621, 659, 665
AluI	AGCT	5 cut(s)	107, 228, 621, 659, 665
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	5 cut(s)	97, 551, 657, 665, 678
Aor13HI	TCCGGA	1 cut(s)	646
AoxI	GGCC	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	498
ArsI	GACNNNNNNTTYG	2 cut(s)	508, 540
AspLEI	GCGC	1 cut(s)	752
AsuHPI	GGTGA	1 cut(s)	307
BaeI	ACNNNNGTAYC	2 cut(s)	120, 153
BamHI	GGATCC	1 cut(s)	670
BbsI	GAAGAC	1 cut(s)	113
BccI	CCATC	3 cut(s)	50, 293, 370
BcgI	CGANNNNNNTGC	2 cut(s)	664, 698
BcoDI	GTCTC	1 cut(s)	398
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	2 cut(s)	79, 660
BglII	AGATCT	2 cut(s)	340, 613
BmcAI	AGTACT	1 cut(s)	689
BmgBI	CACGTC	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	672
BmrI	ACTGGG	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	723
BsaWI	WCCGGW	1 cut(s)	646
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 415, 445
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 440
Bse1I	ACTGG	4 cut(s)	185, 424, 496, 757
BseAI	TCCGGA	1 cut(s)	646
BseDI	CCNNGG	1 cut(s)	723
BseLI	CCNNNNNNNGG	2 cut(s)	58, 440
BseMII	CTCAG	3 cut(s)	458, 631, 746
BseNI	ACTGG	4 cut(s)	185, 424, 496, 757
BseYI	CCCAGC	1 cut(s)	228
BshFI	GGCC	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	647
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	58, 440
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	256
Bsp13I	TCCGGA	1 cut(s)	646
Bsp143I	GATC	6 cut(s)	89, 340, 543, 613, 649, 670
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	3 cut(s)	459, 630, 745
BspEI	TCCGGA	1 cut(s)	646
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	672
BspMAI	CTGCAG	1 cut(s)	83
BspPI	GGATC	5 cut(s)	97, 551, 657, 665, 678
BsrI	ACTGG	4 cut(s)	185, 424, 496, 757
BssECI	CCNNGG	1 cut(s)	723
BssMI	GATC	6 cut(s)	89, 340, 543, 613, 649, 670
BssT1I	CCWWGG	1 cut(s)	723
Bst4CI	ACNGT	1 cut(s)	427
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	3 cut(s)	467, 617, 732
BstHHI	GCGC	1 cut(s)	752
BstKTI	GATC	6 cut(s)	92, 343, 546, 616, 652, 673
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	6 cut(s)	89, 340, 543, 613, 649, 670
BstNSI	RCATGY	2 cut(s)	415, 747
BstSFI	CTRYAG	2 cut(s)	79, 660
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	4 cut(s)	340, 613, 649, 670
BstYI	RGATCY	4 cut(s)	340, 613, 649, 670
BsuRI	GGCC	1 cut(s)	256
BtgZI	GCGATG	1 cut(s)	77
BtrI	CACGTC	1 cut(s)	313
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	76, 489
Cac8I	GCNNGC	1 cut(s)	141
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	1 cut(s)	752
Csp6I	GTAC	2 cut(s)	353, 688
CviAII	CATG	6 cut(s)	46, 306, 412, 592, 601, 744
CviQI	GTAC	2 cut(s)	353, 688
DdeI	CTNAG	3 cut(s)	467, 617, 732
DpnI	GATC	6 cut(s)	91, 342, 545, 615, 651, 672
DpnII	GATC	6 cut(s)	89, 340, 543, 613, 649, 670
Eco130I	CCWWGG	1 cut(s)	723
Eco147I	AGGCCT	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	153
EcoRI	GAATTC	1 cut(s)	498
EcoT14I	CCWWGG	1 cut(s)	723
ErhI	CCWWGG	1 cut(s)	723
FaeI	CATG	6 cut(s)	49, 309, 415, 595, 604, 747
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	6 cut(s)	45, 305, 411, 591, 600, 743
FblI	GTMKAC	1 cut(s)	195
FspBI	CTAG	1 cut(s)	71
GlaI	GCGC	1 cut(s)	751
GsaI	CCCAGC	1 cut(s)	232
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	1 cut(s)	647
HhaI	GCGC	1 cut(s)	752
Hin1II	CATG	6 cut(s)	49, 309, 415, 595, 604, 747
Hin6I	GCGC	1 cut(s)	750
HinP1I	GCGC	1 cut(s)	750
HincII	GTYRAC	2 cut(s)	454, 527
HindII	GTYRAC	2 cut(s)	454, 527
HinfI	GANTC	3 cut(s)	115, 523, 728
HpaI	GTTAAC	1 cut(s)	454
HpaII	CCGG	1 cut(s)	647
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	6 cut(s)	76, 196, 353, 417, 454, 527
Hpy188I	TCNGA	4 cut(s)	149, 468, 515, 675
Hpy188III	TCNNGA	8 cut(s)	46, 125, 434, 503, 647, 653, 668, 694
Hpy8I	GTNNAC	6 cut(s)	76, 196, 353, 417, 454, 527
HpyAV	CCTTC	3 cut(s)	301, 554, 629
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	5 cut(s)	81, 139, 282, 371, 685
HpyF3I	CTNAG	3 cut(s)	467, 617, 732
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	6 cut(s)	49, 309, 415, 595, 604, 747
HspAI	GCGC	1 cut(s)	750
Kpn2I	TCCGGA	1 cut(s)	646
KspAI	GTTAAC	1 cut(s)	454
Kzo9I	GATC	6 cut(s)	89, 340, 543, 613, 649, 670
LmnI	GCTCC	1 cut(s)	293
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	3 cut(s)	313, 375, 479
MalI	GATC	6 cut(s)	91, 342, 545, 615, 651, 672
MboI	GATC	6 cut(s)	89, 340, 543, 613, 649, 670
MboII	GAAGA	3 cut(s)	16, 113, 507
MflI	RGATCY	4 cut(s)	340, 613, 649, 670
MluCI	AATT	7 cut(s)	153, 324, 498, 536, 629, 679, 715
MlyI	GAGTC	3 cut(s)	109, 532, 722
MmeI	TCCRAC	1 cut(s)	500
MnlI	CCTC	5 cut(s)	62, 155, 267, 441, 462
MroI	TCCGGA	1 cut(s)	646
MseI	TTAA	3 cut(s)	453, 539, 554
MspI	CCGG	1 cut(s)	647
NdeII	GATC	6 cut(s)	89, 340, 543, 613, 649, 670
NlaIII	CATG	6 cut(s)	49, 309, 415, 595, 604, 747
NlaIV	GGNNCC	1 cut(s)	672
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	2 cut(s)	415, 747
PagI	TCATGA	1 cut(s)	45
PceI	AGGCCT	1 cut(s)	256
PciI	ACATGT	2 cut(s)	411, 743
PleI	GAGTC	3 cut(s)	109, 531, 722
PpsI	GAGTC	3 cut(s)	109, 531, 722
PscI	ACATGT	2 cut(s)	411, 743
PsiI	TTATAA	1 cut(s)	533
PspFI	CCCAGC	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	672
PstI	CTGCAG	1 cut(s)	83
PsuI	RGATCY	4 cut(s)	340, 613, 649, 670
RsaI	GTAC	2 cut(s)	354, 689
RsaNI	GTAC	2 cut(s)	353, 688
SaqAI	TTAA	3 cut(s)	453, 539, 554
Sau3AI	GATC	6 cut(s)	89, 340, 543, 613, 649, 670
ScaI	AGTACT	1 cut(s)	689
SchI	GAGTC	3 cut(s)	109, 532, 722
SetI	ASST	8 cut(s)	54, 109, 230, 315, 387, 623, 661, 667
SfcI	CTRYAG	2 cut(s)	79, 660
SpeI	ACTAGT	1 cut(s)	70
Sse9I	AATT	7 cut(s)	153, 324, 498, 536, 629, 679, 715
SseBI	AGGCCT	1 cut(s)	256
SspMI	CTAG	1 cut(s)	71
StuI	AGGCCT	1 cut(s)	256
StyI	CCWWGG	1 cut(s)	723
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	1 cut(s)	113
TasI	AATT	7 cut(s)	153, 324, 498, 536, 629, 679, 715
TatI	WGTACW	2 cut(s)	352, 687
Tru1I	TTAA	3 cut(s)	453, 539, 554
Tru9I	TTAA	3 cut(s)	453, 539, 554
TscAI	CASTG	2 cut(s)	83, 496
TseFI	GTSAC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	4 cut(s)	17, 62, 608, 617
TspRI	CASTG	2 cut(s)	83, 496
XapI	RAATTY	1 cut(s)	498
XceI	RCATGY	2 cut(s)	415, 747
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	1 cut(s)	71
ZrmI	AGTACT	1 cut(s)	689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.