Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Reverse (-)

27964734 .. 27966673

Gene Structure 1940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31310

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGATCATGATATTGGTTTTCTGCTTCATATGCATAAACTCAGTCAAAGTTGAAGCACAGTCTGCGACTCTTATTGCTTCAGAAGTGGAAGCTCTGAAAGAAATAGCTACACAAATAGGAAAGAATAATTGGAACTTTAGTGTCGACCCTTGCAGCGATGACAAGAGCTGGGTCACTCCAAAATCTTCTGTTCAGTTCAAAAACAACGTCACCTGCATCTGCTTCTTATCTGATGGTGCATGGCACGTCACCACCATCTCTCTTAGAGGGCAAGACCTTGCTGGTGTGCTTCCACCGTCTATTGCAAAGTTACCCTACCTGATAAATGTTGATTTCTCGAGGAACTACCTCAATGGCAGCATACCGCGAGAATGGGCGTCAACGAAGTTGCAATATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

133

Amino Acids

14.79

Weight (kDa)

6.54

Isoelectric Point (pI)

15.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	221
Acc36I	ACCTGC	1 cut(s)	221
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	1 cut(s)	367
AciI	CCGC	1 cut(s)	365
AcuI	CTGAAG	1 cut(s)	63
AcyI	GRCGYC	1 cut(s)	377
AgsI	TTSAA	2 cut(s)	53, 199
AjiI	CACGTC	1 cut(s)	247
AjuI	GAANNNNNNNTTGG	2 cut(s)	112, 144
AluBI	AGCT	3 cut(s)	92, 107, 168
AluI	AGCT	3 cut(s)	92, 107, 168
Ama87I	CYCGRG	1 cut(s)	337
ApeKI	GCWGC	2 cut(s)	153, 357
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
AsuHPI	GGTGA	2 cut(s)	202, 241
AvaI	CYCGRG	1 cut(s)	337
BbvI	GCAGC	2 cut(s)	165, 369
BccI	CCATC	2 cut(s)	227, 263
BclI	TGATCA	1 cut(s)	3
BfuAI	ACCTGC	1 cut(s)	221
BisI	GCNGC	2 cut(s)	154, 358
BlsI	GCNGC	2 cut(s)	155, 359
BmeT110I	CYCGRG	1 cut(s)	337
BmgBI	CACGTC	1 cut(s)	247
BmsI	GCATC	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	377
BseMII	CTCAG	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	165, 369
BseYI	CCCAGC	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	367
BsiHKCI	CYCGRG	1 cut(s)	337
BsoBI	CYCGRG	1 cut(s)	337
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	1 cut(s)	365
BspCNI	CTCAG	1 cut(s)	53
BspFNI	CGCG	1 cut(s)	367
BspHI	TCATGA	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	221
BssMI	GATC	1 cut(s)	3
BssNI	GRCGYC	1 cut(s)	377
Bst4CI	ACNGT	2 cut(s)	60, 297
BstACI	GRCGYC	1 cut(s)	377
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstDEI	CTNAG	2 cut(s)	40, 263
BstFNI	CGCG	1 cut(s)	367
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 62
BstUI	CGCG	1 cut(s)	367
BstV1I	GCAGC	2 cut(s)	165, 369
BtgZI	GCGATG	1 cut(s)	171
BtrI	CACGTC	1 cut(s)	247
BveI	ACCTGC	1 cut(s)	221
CciI	TCATGA	1 cut(s)	6
CseI	GACGC	1 cut(s)	366
CviAII	CATG	2 cut(s)	7, 240
CviJI	RGCY	3 cut(s)	92, 107, 168
CviKI_1	RGCY	3 cut(s)	92, 107, 168
DdeI	CTNAG	2 cut(s)	40, 263
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco57I	CTGAAG	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	337
EcoT22I	ATGCAT	1 cut(s)	35
FaeI	CATG	2 cut(s)	10, 243
FaiI	YATR	6 cut(s)	8, 29, 31, 35, 241, 362
FatI	CATG	2 cut(s)	6, 239
FauNDI	CATATG	1 cut(s)	29
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	2 cut(s)	154, 358
Fsp4HI	GCNGC	2 cut(s)	154, 358
GluI	GCNGC	2 cut(s)	154, 358
GsaI	CCCAGC	1 cut(s)	172
HgaI	GACGC	1 cut(s)	366
Hin1I	GRCGYC	1 cut(s)	377
Hin1II	CATG	2 cut(s)	10, 243
HincII	GTYRAC	2 cut(s)	145, 381
HindII	GTYRAC	2 cut(s)	145, 381
HinfI	GANTC	1 cut(s)	67
HphI	GGTGA	2 cut(s)	202, 241
Hpy166II	GTNNAC	2 cut(s)	145, 381
Hpy188I	TCNGA	3 cut(s)	82, 96, 232
Hpy188III	TCNNGA	2 cut(s)	7, 337
Hpy8I	GTNNAC	2 cut(s)	145, 381
HpyCH4III	ACNGT	2 cut(s)	60, 297
HpyCH4IV	ACGT	2 cut(s)	207, 246
HpyCH4V	TGCA	6 cut(s)	33, 153, 216, 239, 305, 391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 62
HpyF3I	CTNAG	2 cut(s)	40, 263
HpySE526I	ACGT	2 cut(s)	207, 246
Hsp92I	GRCGYC	1 cut(s)	377
Hsp92II	CATG	2 cut(s)	10, 243
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	4 cut(s)	154, 226, 267, 332
Lsp1109I	GCAGC	2 cut(s)	165, 369
LweI	GCATC	1 cut(s)	225
MaeII	ACGT	2 cut(s)	207, 246
MaeIII	GTNAC	4 cut(s)	172, 208, 247, 309
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	177
MluCI	AATT	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	61
MnlI	CCTC	3 cut(s)	260, 333, 359
Mph1103I	ATGCAT	1 cut(s)	35
MseI	TTAA	1 cut(s)	400
MvnI	CGCG	1 cut(s)	367
MwoI	GCNNNNNNNGC	2 cut(s)	30, 62
NdeI	CATATG	1 cut(s)	29
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	10, 243
NmuCI	GTSAC	3 cut(s)	172, 208, 247
NsiI	ATGCAT	1 cut(s)	35
PaeR7I	CTCGAG	1 cut(s)	337
PagI	TCATGA	1 cut(s)	6
PaqCI	CACCTGC	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	155, 359
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
PspFI	CCCAGC	1 cut(s)	168
SalI	GTCGAC	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	400
SatI	GCNGC	2 cut(s)	154, 358
Sau3AI	GATC	1 cut(s)	3
SchI	GAGTC	1 cut(s)	61
SetI	ASST	9 cut(s)	94, 109, 170, 210, 215, 249, 279, 321, 351
SfaNI	GCATC	1 cut(s)	225
Sfr274I	CTCGAG	1 cut(s)	337
SlaI	CTCGAG	1 cut(s)	337
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	1 cut(s)	127
SsiI	CCGC	1 cut(s)	365
TaaI	ACNGT	2 cut(s)	60, 297
TaiI	ACGT	2 cut(s)	210, 249
TaqI	TCGA	2 cut(s)	144, 338
TasI	AATT	1 cut(s)	127
Tru1I	TTAA	1 cut(s)	400
Tru9I	TTAA	1 cut(s)	400
TseFI	GTSAC	3 cut(s)	172, 208, 247
TseI	GCWGC	2 cut(s)	153, 357
Tsp45I	GTSAC	3 cut(s)	172, 208, 247
TspDTI	ATGAA	1 cut(s)	16
XhoI	CTCGAG	1 cut(s)	337
XmiI	GTMKAC	1 cut(s)	144
Zsp2I	ATGCAT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.