Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000128.1

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Reverse (-)

54243 .. 55131

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000128.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgaagatggcaagtagagataagatgatcatgatgctcatgatattggttttctgcttcatatgcataaactcagtcaaagttgaagcacagcctgcaactcttattgcttcagaagtactggaagctctgaaagaaatagctacacaaataggaaagaaatattggaactttagcgtcgacccttgcagcaatgacatgacctgggccactccaatatcagctgccaggcctctgttcaatagcaccgtcacctgcaactgctccttctctgatggtgcatgccacgtcaccaacatgtatgtcacccctgaaagcttgatcacttggttttcttatgcacaccaactctttgtggaattgtccaactgggttttggttgtttccatggatttggagttaaggatgctgaaagtttctatctttgtgcaagtgggctttaattgttctatggatatgggattatggatgcttaaagttcctatctttgttgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

165

Amino Acids

18.68

Weight (kDa)

5.31

Isoelectric Point (pI)

20.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	263
Acc36I	ACCTGC	1 cut(s)	263
AccI	GTMKAC	1 cut(s)	180
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	1 cut(s)	120
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	2 cut(s)	86, 241
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	2 cut(s)	203, 227
AjuI	GAANNNNNNNTTGG	2 cut(s)	148, 180
AluBI	AGCT	4 cut(s)	128, 143, 224, 318
AluI	AGCT	4 cut(s)	128, 143, 224, 318
AoxI	GGCC	2 cut(s)	207, 230
ApeKI	GCWGC	2 cut(s)	189, 224
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	3 cut(s)	244, 283, 298
BbvI	GCAGC	2 cut(s)	201, 211
BccI	CCATC	1 cut(s)	269
BciT130I	CCWGG	2 cut(s)	205, 229
BclI	TGATCA	2 cut(s)	27, 321
BfuAI	ACCTGC	1 cut(s)	263
BisI	GCNGC	2 cut(s)	190, 225
BlsI	GCNGC	2 cut(s)	191, 226
BmcAI	AGTACT	1 cut(s)	120
Bme1390I	CCNGG	2 cut(s)	205, 229
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	207
BmrFI	CCNGG	2 cut(s)	205, 229
BmrI	ACTGGG	1 cut(s)	379
BmsI	GCATC	3 cut(s)	24, 396, 459
BmuI	ACTGGG	1 cut(s)	379
BsaJI	CCNNGG	2 cut(s)	204, 387
Bse1I	ACTGG	2 cut(s)	126, 374
Bse3DI	GCAATG	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	205, 229
BseDI	CCNNGG	2 cut(s)	204, 387
BseGI	GGATG	2 cut(s)	411, 474
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	2 cut(s)	126, 374
BseXI	GCAGC	2 cut(s)	201, 211
BshFI	GGCC	2 cut(s)	209, 232
BsnI	GGCC	2 cut(s)	209, 232
Bsp143I	GATC	2 cut(s)	27, 321
Bsp19I	CCATGG	1 cut(s)	387
BspANI	GGCC	2 cut(s)	209, 232
BspCNI	CTCAG	1 cut(s)	86
BspHI	TCATGA	2 cut(s)	30, 39
BspMI	ACCTGC	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	199
BsrI	ACTGG	2 cut(s)	126, 374
BssECI	CCNNGG	2 cut(s)	204, 387
BssMI	GATC	2 cut(s)	27, 321
BssT1I	CCWWGG	1 cut(s)	387
Bst2UI	CCWGG	2 cut(s)	205, 229
Bst4CI	ACNGT	1 cut(s)	250
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstC8I	GCNNGC	2 cut(s)	96, 283
BstDEI	CTNAG	1 cut(s)	73
BstDSI	CCRYGG	1 cut(s)	387
BstF5I	GGATG	2 cut(s)	411, 474
BstKTI	GATC	2 cut(s)	30, 324
BstMBI	GATC	2 cut(s)	27, 321
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 95
BstNI	CCWGG	2 cut(s)	205, 229
BstNSI	RCATGY	2 cut(s)	285, 301
BstSCI	CCNGG	2 cut(s)	203, 227
BstV1I	GCAGC	2 cut(s)	201, 211
BstXI	CCANNNNNNTGG	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	209, 232
BtgI	CCRYGG	1 cut(s)	387
BtrI	CACGTC	1 cut(s)	289
BtsCI	GGATG	2 cut(s)	411, 474
BveI	ACCTGC	1 cut(s)	263
Cac8I	GCNNGC	2 cut(s)	96, 283
CciI	TCATGA	2 cut(s)	30, 39
Cfr13I	GGNCC	1 cut(s)	207
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	6 cut(s)	31, 40, 199, 282, 298, 388
CviJI	RGCY	8 cut(s)	94, 128, 143, 209, 224, 232, 318, 438
CviKI_1	RGCY	8 cut(s)	94, 128, 143, 209, 224, 232, 318, 438
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	2 cut(s)	29, 323
DpnII	GATC	2 cut(s)	27, 321
Eco130I	CCWWGG	1 cut(s)	387
Eco147I	AGGCCT	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	96
EcoRII	CCWGG	2 cut(s)	203, 227
EcoT14I	CCWWGG	1 cut(s)	387
EcoT22I	ATGCAT	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	6 cut(s)	34, 43, 202, 285, 301, 391
FatI	CATG	6 cut(s)	30, 39, 198, 281, 297, 387
FauNDI	CATATG	1 cut(s)	62
FbaI	TGATCA	2 cut(s)	27, 321
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	2 cut(s)	190, 225
FokI	GGATG	2 cut(s)	418, 481
Fsp4HI	GCNGC	2 cut(s)	190, 225
GluI	GCNGC	2 cut(s)	190, 225
HaeIII	GGCC	2 cut(s)	209, 232
HgaI	GACGC	1 cut(s)	166
Hin1II	CATG	6 cut(s)	34, 43, 202, 285, 301, 391
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	316
HphI	GGTGA	3 cut(s)	244, 283, 298
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	3 cut(s)	115, 132, 274
Hpy188III	TCNNGA	2 cut(s)	31, 40
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	7 cut(s)	66, 98, 189, 258, 281, 341, 430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 95
HpyF3I	CTNAG	1 cut(s)	73
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	6 cut(s)	34, 43, 202, 285, 301, 391
Ksp22I	TGATCA	2 cut(s)	27, 321
Kzo9I	GATC	2 cut(s)	27, 321
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	9 cut(s)	107, 108, 190, 214, 217, 241, 268, 324, 355
Lsp1109I	GCAGC	2 cut(s)	201, 211
LweI	GCATC	3 cut(s)	24, 396, 459
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	3 cut(s)	250, 289, 304
MalI	GATC	2 cut(s)	29, 323
MboI	GATC	2 cut(s)	27, 321
MboII	GAAGA	1 cut(s)	16
MluCI	AATT	2 cut(s)	359, 442
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	1 cut(s)	243
Mph1103I	ATGCAT	1 cut(s)	68
MseI	TTAA	3 cut(s)	401, 441, 474
MslI	CAYNNNNRTG	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	224
MspR9I	CCNGG	2 cut(s)	205, 229
MvaI	CCWGG	2 cut(s)	205, 229
MwoI	GCNNNNNNNGC	2 cut(s)	63, 95
NcoI	CCATGG	1 cut(s)	387
NdeI	CATATG	1 cut(s)	62
NdeII	GATC	2 cut(s)	27, 321
NlaIII	CATG	6 cut(s)	34, 43, 202, 285, 301, 391
NmuCI	GTSAC	3 cut(s)	250, 289, 304
NsiI	ATGCAT	1 cut(s)	68
NspI	RCATGY	2 cut(s)	285, 301
PaeI	GCATGC	1 cut(s)	285
PagI	TCATGA	2 cut(s)	30, 39
PaqCI	CACCTGC	1 cut(s)	263
PceI	AGGCCT	1 cut(s)	232
PciI	ACATGT	1 cut(s)	297
PkrI	GCNGC	2 cut(s)	191, 226
PscI	ACATGT	1 cut(s)	297
Psp6I	CCWGG	2 cut(s)	203, 227
PspGI	CCWGG	2 cut(s)	203, 227
PspPI	GGNCC	1 cut(s)	207
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	296
SalI	GTCGAC	1 cut(s)	179
SaqAI	TTAA	3 cut(s)	401, 441, 474
SatI	GCNGC	2 cut(s)	190, 225
Sau3AI	GATC	2 cut(s)	27, 321
Sau96I	GGNCC	1 cut(s)	207
ScaI	AGTACT	1 cut(s)	120
ScrFI	CCNGG	2 cut(s)	205, 229
SetI	ASST	7 cut(s)	130, 145, 206, 226, 257, 291, 320
SfaNI	GCATC	3 cut(s)	24, 396, 459
SmiMI	CAYNNNNRTG	1 cut(s)	296
SphI	GCATGC	1 cut(s)	285
Sse9I	AATT	2 cut(s)	359, 442
SseBI	AGGCCT	1 cut(s)	232
SspI	AATATT	1 cut(s)	164
StuI	AGGCCT	1 cut(s)	232
StyD4I	CCNGG	2 cut(s)	203, 227
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	1 cut(s)	180
TasI	AATT	2 cut(s)	359, 442
TatI	WGTACW	1 cut(s)	118
Tru1I	TTAA	3 cut(s)	401, 441, 474
Tru9I	TTAA	3 cut(s)	401, 441, 474
TseFI	GTSAC	3 cut(s)	250, 289, 304
TseI	GCWGC	2 cut(s)	189, 224
Tsp45I	GTSAC	3 cut(s)	250, 289, 304
TspDTI	ATGAA	2 cut(s)	17, 49
XceI	RCATGY	2 cut(s)	285, 301
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmiI	GTMKAC	1 cut(s)	180
ZrmI	AGTACT	1 cut(s)	120
Zsp2I	ATGCAT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.