Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000217.1

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Reverse (-)

164247 .. 166539

Gene Structure 2293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000217.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgcatgataagaagaagatgaagcatgacatcattatgctcatgatcttggttctctgcttgatctgcataacatcactcgaagttgaagcaaaatgttcgcctcttccgcctactgaagtggaagcactaaaagaaattggtaaggaattggggaaaagggactggaactttgaagaagacccatgtagcaataagtcaagttgggccagcccattcgacacaaagtctgaggattggccttcatccatgaacaatgtcacttgcagctgctccttccctgatgaaacataccacgttatcagcattgatttgaataggaactacctcactggtgagataccgcgtcaatgggcttctacaaagctggaacatctgtctgtttcggtgaacaatttaccggctggatcaatccctagctacttaggaaacattaccactctacagtatctgagcctagagactaaccggttttctggaactgttccttctgagcttggtaatttggttaacttaacgactctcgttcttagcgcaaacaatctcaccggagagttgccgatggctttgactaatctgactaaattgattgaactaaggataagcagtaacagctttactggaagtatagctcccgagttttttcaaagctggaatcaactacaggaattagagatccaagctagtggtctagaagggcccattccatctagcatttctatgttgaaaaaattaacagagcttgacttaaatggaaagggatcagaatttccacccttgaatgaaacaactggtttgaaaagattaatgctgaggagctgtaatttatccggacgtattcctaattacacatcggcagtggagtcattgaatatgttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

293

Amino Acids

32.47

Weight (kDa)

5.07

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	346
AccIII	TCCGGA	1 cut(s)	830
AciI	CCGC	2 cut(s)	110, 344
AclWI	GGATC	3 cut(s)	415, 670, 769
AcsI	RAATTY	1 cut(s)	767
AcuI	CTGAAG	1 cut(s)	138
AgeI	ACCGGT	1 cut(s)	468
AgsI	TTSAA	9 cut(s)	89, 176, 316, 593, 647, 727, 781, 799, 871
AhdI	GACNNNNNGTC	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	3 cut(s)	415, 670, 769
AlwNI	CAGNNNCTG	1 cut(s)	451
Ama87I	CYCGRG	1 cut(s)	635
Aor13HI	TCCGGA	1 cut(s)	830
AoxI	GGCC	3 cut(s)	207, 239, 698
ApaI	GGGCCC	1 cut(s)	702
ApeKI	GCWGC	2 cut(s)	267, 270
ApoI	RAATTY	1 cut(s)	767
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AseI	ATTAAT	1 cut(s)	806
AsiGI	ACCGGT	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	536
AspS9I	GGNCC	3 cut(s)	207, 698, 699
AsuHPI	GGTGA	3 cut(s)	347, 400, 538
AvaI	CYCGRG	1 cut(s)	635
BaeGI	GKGCMC	1 cut(s)	702
BanII	GRGCYC	1 cut(s)	702
BbsI	GAAGAC	1 cut(s)	186
BbvCI	CCTCAGC	1 cut(s)	812
BbvI	GCAGC	2 cut(s)	257, 279
BccI	CCATC	2 cut(s)	556, 715
BcgI	CGANNNNNNTGC	2 cut(s)	81, 115
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	5 cut(s)	417, 458, 684, 692, 711
BfmI	CTRYAG	2 cut(s)	443, 662
BisI	GCNGC	2 cut(s)	268, 271
BlsI	GCNGC	2 cut(s)	269, 272
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmeT110I	CYCGRG	1 cut(s)	635
BmgT120I	GGNCC	3 cut(s)	207, 698, 699
BmiI	GGNNCC	1 cut(s)	700
BpiI	GAAGAC	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	812
BsaWI	WCCGGW	3 cut(s)	468, 548, 830
Bse118I	RCCGGY	2 cut(s)	400, 468
Bse1I	ACTGG	4 cut(s)	170, 337, 625, 796
BseAI	TCCGGA	1 cut(s)	830
BseGI	GGATG	1 cut(s)	245
BseMII	CTCAG	4 cut(s)	222, 443, 483, 803
BseNI	ACTGG	4 cut(s)	170, 337, 625, 796
BseRI	GAGGAG	1 cut(s)	829
BseSI	GKGCMC	1 cut(s)	702
BseXI	GCAGC	2 cut(s)	257, 279
Bsh1236I	CGCG	1 cut(s)	346
BshFI	GGCC	3 cut(s)	209, 241, 700
BshTI	ACCGGT	1 cut(s)	468
BsiHKCI	CYCGRG	1 cut(s)	635
BsiSI	CCGG	4 cut(s)	401, 469, 549, 831
BslFI	GGGAC	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	455
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	3 cut(s)	209, 241, 700
BsoBI	CYCGRG	1 cut(s)	635
Bsp120I	GGGCCC	1 cut(s)	698
Bsp1286I	GDGCHC	1 cut(s)	702
Bsp13I	TCCGGA	1 cut(s)	830
Bsp143I	GATC	5 cut(s)	45, 63, 407, 675, 761
BspACI	CCGC	2 cut(s)	110, 344
BspANI	GGCC	3 cut(s)	209, 241, 700
BspCNI	CTCAG	4 cut(s)	223, 444, 484, 804
BspEI	TCCGGA	1 cut(s)	830
BspFNI	CGCG	1 cut(s)	346
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	700
BspPI	GGATC	3 cut(s)	415, 670, 769
BsrFI	RCCGGY	2 cut(s)	400, 468
BsrI	ACTGG	4 cut(s)	170, 337, 625, 796
BssAI	RCCGGY	2 cut(s)	400, 468
BssMI	GATC	5 cut(s)	45, 63, 407, 675, 761
Bst4CI	ACNGT	2 cut(s)	447, 484
Bst6I	CTCTTC	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	7 cut(s)	231, 424, 452, 492, 530, 596, 812
BstF5I	GGATG	1 cut(s)	245
BstFNI	CGCG	1 cut(s)	346
BstHHI	GCGC	1 cut(s)	536
BstKTI	GATC	5 cut(s)	48, 66, 410, 678, 764
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	5 cut(s)	45, 63, 407, 675, 761
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 109, 612
BstSFI	CTRYAG	2 cut(s)	443, 662
BstSLI	GKGCMC	1 cut(s)	702
BstUI	CGCG	1 cut(s)	346
BstV1I	GCAGC	2 cut(s)	257, 279
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	675
BstXI	CCANNNNNNTGG	1 cut(s)	686
BstYI	RGATCY	1 cut(s)	675
BsuRI	GGCC	3 cut(s)	209, 241, 700
BtsCI	GGATG	1 cut(s)	245
BtsI	GCAGTG	1 cut(s)	864
BtsIMutI	CAGTG	2 cut(s)	330, 864
Cac8I	GCNNGC	1 cut(s)	211
CaiI	CAGNNNCTG	1 cut(s)	451
CciI	TCATGA	1 cut(s)	42
CfoI	GCGC	1 cut(s)	536
Cfr10I	RCCGGY	2 cut(s)	400, 468
Cfr13I	GGNCC	3 cut(s)	207, 698, 699
CseI	GACGC	1 cut(s)	335
CspAI	ACCGGT	1 cut(s)	468
CviAII	CATG	5 cut(s)	5, 26, 43, 186, 250
DdeI	CTNAG	7 cut(s)	231, 424, 452, 492, 530, 596, 812
DpnI	GATC	5 cut(s)	47, 65, 409, 677, 763
DpnII	GATC	5 cut(s)	45, 63, 407, 675, 761
DriI	GACNNNNNGTC	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	111
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	111
EciI	GGCGGA	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	702
Eco57I	CTGAAG	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	635
EcoO109I	RGGNCCY	1 cut(s)	698
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	702
FaeI	CATG	5 cut(s)	8, 29, 46, 189, 253
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	5 cut(s)	4, 25, 42, 185, 249
Fnu4HI	GCNGC	2 cut(s)	268, 271
FokI	GGATG	1 cut(s)	232
FriOI	GRGCYC	1 cut(s)	702
Fsp4HI	GCNGC	2 cut(s)	268, 271
FspBI	CTAG	5 cut(s)	417, 458, 684, 692, 711
GlaI	GCGC	1 cut(s)	535
GluI	GCNGC	2 cut(s)	268, 271
HaeIII	GGCC	3 cut(s)	209, 241, 700
HapII	CCGG	4 cut(s)	401, 469, 549, 831
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	1 cut(s)	536
Hin1II	CATG	5 cut(s)	8, 29, 46, 189, 253
Hin6I	GCGC	1 cut(s)	534
HinP1I	GCGC	1 cut(s)	534
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HinfI	GANTC	3 cut(s)	520, 655, 863
HpaI	GTTAAC	1 cut(s)	511
HpaII	CCGG	4 cut(s)	401, 469, 549, 831
HphI	GGTGA	3 cut(s)	347, 400, 538
Hpy166II	GTNNAC	2 cut(s)	391, 511
Hpy188I	TCNGA	5 cut(s)	232, 453, 493, 579, 766
Hpy188III	TCNNGA	5 cut(s)	43, 477, 635, 692, 831
Hpy8I	GTNNAC	2 cut(s)	391, 511
HpyAV	CCTTC	4 cut(s)	252, 286, 498, 689
HpyCH4III	ACNGT	2 cut(s)	447, 484
HpyCH4IV	ACGT	2 cut(s)	297, 835
HpyCH4V	TGCA	3 cut(s)	4, 69, 267
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 109, 612
HpyF3I	CTNAG	7 cut(s)	231, 424, 452, 492, 530, 596, 812
HpySE526I	ACGT	2 cut(s)	297, 835
Hsp92II	CATG	5 cut(s)	8, 29, 46, 189, 253
HspAI	GCGC	1 cut(s)	534
Kpn2I	TCCGGA	1 cut(s)	830
KspAI	GTTAAC	1 cut(s)	511
Kzo9I	GATC	5 cut(s)	45, 63, 407, 675, 761
LmnI	GCTCC	3 cut(s)	278, 637, 816
Lsp1109I	GCAGC	2 cut(s)	257, 279
MaeI	CTAG	5 cut(s)	417, 458, 684, 692, 711
MaeII	ACGT	2 cut(s)	297, 835
MaeIII	GTNAC	2 cut(s)	259, 608
MalI	GATC	5 cut(s)	47, 65, 409, 677, 763
MboI	GATC	5 cut(s)	45, 63, 407, 675, 761
MboII	GAAGA	5 cut(s)	25, 28, 98, 188, 191
MflI	RGATCY	1 cut(s)	675
MhlI	GDGCHC	1 cut(s)	702
MlyI	GAGTC	2 cut(s)	514, 872
MnlI	CCTC	4 cut(s)	114, 226, 338, 807
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	830
MseI	TTAA	5 cut(s)	510, 515, 734, 749, 806
MslI	CAYNNNNRTG	2 cut(s)	35, 719
MspA1I	CMGCKG	1 cut(s)	270
MspI	CCGG	4 cut(s)	401, 469, 549, 831
MvnI	CGCG	1 cut(s)	346
MwoI	GCNNNNNNNGC	3 cut(s)	66, 109, 612
NdeII	GATC	5 cut(s)	45, 63, 407, 675, 761
NlaIII	CATG	5 cut(s)	8, 29, 46, 189, 253
NlaIV	GGNNCC	1 cut(s)	700
NmuCI	GTSAC	1 cut(s)	259
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	655
PinAI	ACCGGT	1 cut(s)	468
PkrI	GCNGC	2 cut(s)	269, 272
PleI	GAGTC	2 cut(s)	514, 871
PpsI	GAGTC	2 cut(s)	514, 871
PshBI	ATTAAT	1 cut(s)	806
PspN4I	GGNNCC	1 cut(s)	700
PspOMI	GGGCCC	1 cut(s)	698
PspPI	GGNCC	3 cut(s)	207, 698, 699
PstNI	CAGNNNCTG	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	675
PvuII	CAGCTG	1 cut(s)	270
RseI	CAYNNNNRTG	2 cut(s)	35, 719
SaqAI	TTAA	5 cut(s)	510, 515, 734, 749, 806
SatI	GCNGC	2 cut(s)	268, 271
Sau3AI	GATC	5 cut(s)	45, 63, 407, 675, 761
Sau96I	GGNCC	3 cut(s)	207, 698, 699
SchI	GAGTC	2 cut(s)	514, 872
SduI	GDGCHC	1 cut(s)	702
SfcI	CTRYAG	2 cut(s)	443, 662
SmiMI	CAYNNNNRTG	2 cut(s)	35, 719
SsiI	CCGC	2 cut(s)	110, 344
SspMI	CTAG	5 cut(s)	417, 458, 684, 692, 711
TaaI	ACNGT	2 cut(s)	447, 484
TaiI	ACGT	2 cut(s)	300, 838
TaqI	TCGA	2 cut(s)	81, 219
TfiI	GAWTC	1 cut(s)	655
Tru1I	TTAA	5 cut(s)	510, 515, 734, 749, 806
Tru9I	TTAA	5 cut(s)	510, 515, 734, 749, 806
TscAI	CASTG	2 cut(s)	337, 864
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	2 cut(s)	267, 270
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	5 cut(s)	35, 234, 266, 300, 798
TspRI	CASTG	2 cut(s)	337, 864
VspI	ATTAAT	1 cut(s)	806
XapI	RAATTY	1 cut(s)	767
XbaI	TCTAGA	1 cut(s)	691
XspI	CTAG	5 cut(s)	417, 458, 684, 692, 711
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.