Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Reverse (-)

42719880 .. 42728221

Gene Structure 8342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1295000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAGTGTGAAGTAAAATGGCAGCAAGTCAAAATCTTTCGAAGTTGTTATTCTGCTATGCTGCTCTACTCACAGTGCTTATCTGCATTAAGCCTATCAAATCCCAGGAACAGGTGGGCACTCTTGCAGATGATGAAGGTGAAGGGCACTCTTGCAGATGATGAAGTGGAAGCACTTCGTGAAATAGCTGTGCAATTGAATAAAAAGGATTGGAATTTCAGTGATCCTTGTAGCAATATTCCGACTGTTTCAATCCCGCATACAGATCAGTACAACAACACTCTCGTCTGCAACTGCTCTTTCTCTGGCAATGTATGCCACATTCAAAGCATTTTTCTTACCGGACAGGACCTTGATGGTGTGCTTCCACCAGCACTGTCGAAGCTACCTTACCTTAAGCAAGTTAATTTGGGCCAGAATTACCTTAGCGGTTCAATACCACGCGAATGGAATTCTACTAAGTTGGAATTTCTGGTTCTCAGTGTGAACAACTTATCAGGACCTATTCCTGGTTATTTGGGAAGCATAACTACTCTCCAAGCACTAGCAACTAATTTTCTGGAACTATTCCCCTGGAGTTGGGCAATTTGGTTAACATGGAGCTTCTGTCAATTTTCTATTTTATTGTCCCTTATATGTTTATACCTTTTATTTTTTTTGGATTTTCATAAGCAAGTATATATGTTAATTGACAACGGTTTGGTCTTTTTTTTTGTATGGGTATTGGGTAACTACAGTTATCTTCGTGCTAACAATCTCACCGGTGAGCTGCCTTTGGCCCTCATTAAAATGACCAAATTAAGAGTACTAGAGATGCAAGCGAGTGGTCTTGAAGGCCCACTTCCATCTAGTCTCTCTGCCTTGAATAATATGACATATCTAAGGATTAGTGACTTAAGCGGTGAGAGTTCAGCTTTTCCAAACTTATCAAACATGACGAGCATGGTTAAATTGATGTTAAGGAGCTGCAATATAACAGGAGAAATCCCTGAATATATCTCTACCATGAGAAATCTGACTGATTTACCCGGGCTCCATCACATTCCGGGCTCGACTCCGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

355

Amino Acids

39.81

Weight (kDa)

6.21

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	444
AciI	CCGC	3 cut(s)	257, 429, 900
AclWI	GGATC	1 cut(s)	218
AcsI	RAATTY	3 cut(s)	214, 451, 467
AdeI	CACNNNGTG	1 cut(s)	179
AfaI	GTAC	2 cut(s)	272, 807
AfiI	CCNNNNNNNGG	3 cut(s)	111, 509, 579
AflII	CTTAAG	2 cut(s)	395, 895
AgeI	ACCGGT	1 cut(s)	761
AgsI	TTSAA	6 cut(s)	199, 252, 326, 435, 833, 865
AjnI	CCWGG	3 cut(s)	104, 508, 572
AluBI	AGCT	6 cut(s)	188, 385, 603, 769, 914, 966
AluI	AGCT	6 cut(s)	188, 385, 603, 769, 914, 966
Alw26I	GTCTC	1 cut(s)	857
AlwI	GGATC	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	1028
AoxI	GGCC	3 cut(s)	412, 777, 835
ApeKI	GCWGC	4 cut(s)	22, 61, 769, 966
ApoI	RAATTY	3 cut(s)	214, 451, 467
AsiGI	ACCGGT	1 cut(s)	761
Asp700I	GAANNNNTTC	1 cut(s)	174
AspS9I	GGNCC	5 cut(s)	349, 412, 500, 778, 836
AsuC2I	CCSGG	3 cut(s)	1029, 1030, 1047
AsuHPI	GGTGA	4 cut(s)	151, 751, 776, 914
AsuII	TTCGAA	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	1028
AvaII	GGWCC	2 cut(s)	349, 500
BaeGI	GKGCMC	2 cut(s)	121, 149
BanII	GRGCYC	2 cut(s)	1035, 1052
BarI	GAAGNNNNNNTAC	4 cut(s)	374, 406, 514, 546
BbvI	GCAGC	4 cut(s)	34, 48, 756, 953
BccI	CCATC	3 cut(s)	350, 853, 1044
BciT130I	CCWGG	3 cut(s)	106, 510, 574
BcnI	CCSGG	3 cut(s)	1029, 1030, 1047
BcoDI	GTCTC	1 cut(s)	857
BfaI	CTAG	3 cut(s)	545, 809, 849
BfmI	CTRYAG	1 cut(s)	733
BfrI	CTTAAG	2 cut(s)	395, 895
BisI	GCNGC	4 cut(s)	23, 62, 770, 967
BlsI	GCNGC	4 cut(s)	24, 63, 771, 968
BmcAI	AGTACT	1 cut(s)	807
Bme1390I	CCNGG	6 cut(s)	106, 510, 574, 1029, 1030, 1047
Bme18I	GGWCC	2 cut(s)	349, 500
BmeT110I	CYCGRG	1 cut(s)	1028
BmgT120I	GGNCC	5 cut(s)	349, 412, 500, 778, 836
BmiI	GGNNCC	1 cut(s)	1034
BmrFI	CCNGG	6 cut(s)	106, 510, 574, 1029, 1030, 1047
BmsI	GCATC	1 cut(s)	804
BpmI	CTGGAG	1 cut(s)	595
Bpu10I	CCTNAGC	1 cut(s)	425
Bpu14I	TTCGAA	1 cut(s)	40
BpuMI	CCSGG	3 cut(s)	1029, 1030, 1047
BsaJI	CCNNGG	3 cut(s)	104, 572, 1028
BsaWI	WCCGGW	2 cut(s)	341, 761
BsaXI	ACNNNNNCTCC	4 cut(s)	592, 622, 1017, 1047
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 509, 579
Bse118I	RCCGGY	1 cut(s)	761
Bse3DI	GCAATG	1 cut(s)	316
BseBI	CCWGG	3 cut(s)	106, 510, 574
BseDI	CCNNGG	3 cut(s)	104, 572, 1028
BseLI	CCNNNNNNNGG	3 cut(s)	111, 509, 579
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	493
BseSI	GKGCMC	2 cut(s)	121, 149
BseXI	GCAGC	4 cut(s)	34, 48, 756, 953
Bsh1236I	CGCG	1 cut(s)	444
BshFI	GGCC	3 cut(s)	414, 779, 837
BshTI	ACCGGT	1 cut(s)	761
BsiHKCI	CYCGRG	1 cut(s)	1028
BsiSI	CCGG	4 cut(s)	342, 762, 1029, 1046
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	3 cut(s)	111, 509, 579
BsmAI	GTCTC	1 cut(s)	857
BsmFI	GGGAC	1 cut(s)	613
BsnI	GGCC	3 cut(s)	414, 779, 837
BsoBI	CYCGRG	1 cut(s)	1028
Bsp119I	TTCGAA	1 cut(s)	40
Bsp1286I	GDGCHC	4 cut(s)	121, 149, 1035, 1052
Bsp143I	GATC	2 cut(s)	223, 265
BspACI	CCGC	3 cut(s)	257, 429, 900
BspANI	GGCC	3 cut(s)	414, 779, 837
BspCNI	CTCAG	1 cut(s)	492
BspFNI	CGCG	1 cut(s)	444
BspLI	GGNNCC	1 cut(s)	1034
BspPI	GGATC	1 cut(s)	218
BspT104I	TTCGAA	1 cut(s)	40
BspTI	CTTAAG	2 cut(s)	395, 895
BsrDI	GCAATG	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	761
BssAI	RCCGGY	1 cut(s)	761
BssECI	CCNNGG	3 cut(s)	104, 572, 1028
BssMI	GATC	2 cut(s)	223, 265
Bst2UI	CCWGG	3 cut(s)	106, 510, 574
Bst4CI	ACNGT	5 cut(s)	75, 247, 378, 698, 737
BstAFI	CTTAAG	2 cut(s)	395, 895
BstAPI	GCANNNNNTGC	1 cut(s)	315
BstBI	TTCGAA	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	819
BstDEI	CTNAG	4 cut(s)	425, 459, 479, 881
BstFNI	CGCG	1 cut(s)	444
BstKTI	GATC	2 cut(s)	226, 268
BstMAI	GTCTC	1 cut(s)	857
BstMBI	GATC	2 cut(s)	223, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	315
BstNI	CCWGG	3 cut(s)	106, 510, 574
BstSCI	CCNGG	6 cut(s)	104, 508, 572, 1027, 1028, 1045
BstSFI	CTRYAG	1 cut(s)	733
BstSLI	GKGCMC	2 cut(s)	121, 149
BstUI	CGCG	1 cut(s)	444
BstV1I	GCAGC	4 cut(s)	34, 48, 756, 953
BstXI	CCANNNNNNTGG	1 cut(s)	447
BsuRI	GGCC	3 cut(s)	414, 779, 837
BtsIMutI	CAGTG	4 cut(s)	80, 226, 374, 487
Cac8I	GCNNGC	1 cut(s)	819
Cfr10I	RCCGGY	1 cut(s)	761
Cfr13I	GGNCC	5 cut(s)	349, 412, 500, 778, 836
Cfr9I	CCCGGG	1 cut(s)	1028
Csp6I	GTAC	2 cut(s)	271, 806
CspAI	ACCGGT	1 cut(s)	761
CviAII	CATG	4 cut(s)	597, 934, 943, 1006
CviQI	GTAC	2 cut(s)	271, 806
DdeI	CTNAG	4 cut(s)	425, 459, 479, 881
DpnI	GATC	2 cut(s)	225, 267
DpnII	GATC	2 cut(s)	223, 265
DraIII	CACNNNGTG	1 cut(s)	179
Eco24I	GRGCYC	2 cut(s)	1035, 1052
Eco47I	GGWCC	2 cut(s)	349, 500
Eco88I	CYCGRG	1 cut(s)	1028
EcoO109I	RGGNCCY	2 cut(s)	349, 500
EcoRI	GAATTC	1 cut(s)	451
EcoRII	CCWGG	3 cut(s)	104, 508, 572
EcoT38I	GRGCYC	2 cut(s)	1035, 1052
FaeI	CATG	4 cut(s)	600, 937, 946, 1009
FalI	AAGNNNNNCTT	2 cut(s)	825, 857
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	4 cut(s)	596, 933, 942, 1005
FauI	CCCGC	1 cut(s)	264
Fnu4HI	GCNGC	4 cut(s)	23, 62, 770, 967
FriOI	GRGCYC	2 cut(s)	1035, 1052
Fsp4HI	GCNGC	4 cut(s)	23, 62, 770, 967
FspBI	CTAG	3 cut(s)	545, 809, 849
GluI	GCNGC	4 cut(s)	23, 62, 770, 967
GsuI	CTGGAG	1 cut(s)	595
HaeIII	GGCC	3 cut(s)	414, 779, 837
HapII	CCGG	4 cut(s)	342, 762, 1029, 1046
Hin1II	CATG	4 cut(s)	600, 937, 946, 1009
HincII	GTYRAC	1 cut(s)	594
HindII	GTYRAC	1 cut(s)	594
HinfI	GANTC	1 cut(s)	1054
HpaI	GTTAAC	1 cut(s)	594
HpaII	CCGG	4 cut(s)	342, 762, 1029, 1046
HphI	GGTGA	4 cut(s)	151, 751, 776, 914
Hpy166II	GTNNAC	2 cut(s)	487, 594
Hpy188I	TCNGA	2 cut(s)	243, 1017
Hpy188III	TCNNGA	4 cut(s)	179, 498, 560, 830
Hpy8I	GTNNAC	2 cut(s)	487, 594
Hpy99I	CGWCG	1 cut(s)	1063
HpyAV	CCTTC	3 cut(s)	130, 136, 827
HpyCH4III	ACNGT	5 cut(s)	75, 247, 378, 698, 737
HpyCH4V	TGCA	7 cut(s)	86, 127, 155, 193, 291, 817, 969
HpyF10VI	GCNNNNNNNGC	1 cut(s)	315
HpyF3I	CTNAG	4 cut(s)	425, 459, 479, 881
Hsp92II	CATG	4 cut(s)	600, 937, 946, 1009
KspAI	GTTAAC	1 cut(s)	594
Kzo9I	GATC	2 cut(s)	223, 265
LmnI	GCTCC	3 cut(s)	600, 963, 1038
Lsp1109I	GCAGC	4 cut(s)	34, 48, 756, 953
LweI	GCATC	1 cut(s)	804
MaeI	CTAG	3 cut(s)	545, 809, 849
MaeIII	GTNAC	2 cut(s)	728, 890
MalI	GATC	2 cut(s)	225, 267
MboI	GATC	2 cut(s)	223, 265
MboII	GAAGA	1 cut(s)	734
MfeI	CAATTG	1 cut(s)	194
MhlI	GDGCHC	4 cut(s)	121, 149, 1035, 1052
MlyI	GAGTC	1 cut(s)	1048
MmeI	TCCRAC	2 cut(s)	266, 444
MnlI	CCTC	1 cut(s)	791
MroXI	GAANNNNTTC	1 cut(s)	174
MslI	CAYNNNNRTG	2 cut(s)	445, 788
MspCI	CTTAAG	2 cut(s)	395, 895
MspI	CCGG	4 cut(s)	342, 762, 1029, 1046
MspR9I	CCNGG	6 cut(s)	106, 510, 574, 1029, 1030, 1047
MunI	CAATTG	1 cut(s)	194
MvaI	CCWGG	3 cut(s)	106, 510, 574
MvnI	CGCG	1 cut(s)	444
MwoI	GCNNNNNNNGC	1 cut(s)	315
NciI	CCSGG	3 cut(s)	1029, 1030, 1047
NdeII	GATC	2 cut(s)	223, 265
NlaIII	CATG	4 cut(s)	600, 937, 946, 1009
NlaIV	GGNNCC	1 cut(s)	1034
NmuCI	GTSAC	1 cut(s)	890
NspV	TTCGAA	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	1058
PdmI	GAANNNNTTC	1 cut(s)	174
PflFI	GACNNNGTC	1 cut(s)	1057
PinAI	ACCGGT	1 cut(s)	761
PkrI	GCNGC	4 cut(s)	24, 63, 771, 968
PleI	GAGTC	1 cut(s)	1048
PpsI	GAGTC	1 cut(s)	1048
PpuMI	RGGWCCY	2 cut(s)	349, 500
Psp5II	RGGWCCY	2 cut(s)	349, 500
Psp6I	CCWGG	3 cut(s)	104, 508, 572
PspGI	CCWGG	3 cut(s)	104, 508, 572
PspN4I	GGNNCC	1 cut(s)	1034
PspPI	GGNCC	5 cut(s)	349, 412, 500, 778, 836
PspPPI	RGGWCCY	2 cut(s)	349, 500
PsyI	GACNNNGTC	1 cut(s)	1057
RsaI	GTAC	2 cut(s)	272, 807
RsaNI	GTAC	2 cut(s)	271, 806
RseI	CAYNNNNRTG	2 cut(s)	445, 788
SatI	GCNGC	4 cut(s)	23, 62, 770, 967
Sau3AI	GATC	2 cut(s)	223, 265
Sau96I	GGNCC	5 cut(s)	349, 412, 500, 778, 836
ScaI	AGTACT	1 cut(s)	807
SchI	GAGTC	1 cut(s)	1048
ScrFI	CCNGG	6 cut(s)	106, 510, 574, 1029, 1030, 1047
SduI	GDGCHC	4 cut(s)	121, 149, 1035, 1052
SfaNI	GCATC	1 cut(s)	804
SfcI	CTRYAG	1 cut(s)	733
SfuI	TTCGAA	1 cut(s)	40
SgrAI	CRCCGGYG	1 cut(s)	761
SinI	GGWCC	2 cut(s)	349, 500
SmaI	CCCGGG	1 cut(s)	1030
SmiMI	CAYNNNNRTG	2 cut(s)	445, 788
SmlI	CTYRAG	2 cut(s)	395, 895
SmoI	CTYRAG	2 cut(s)	395, 895
SsiI	CCGC	3 cut(s)	257, 429, 900
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	3 cut(s)	545, 809, 849
StyD4I	CCNGG	6 cut(s)	104, 508, 572, 1027, 1028, 1045
TaaI	ACNGT	5 cut(s)	75, 247, 378, 698, 737
TaqI	TCGA	3 cut(s)	40, 380, 1052
TatI	WGTACW	2 cut(s)	270, 805
TscAI	CASTG	4 cut(s)	80, 226, 381, 487
TseFI	GTSAC	1 cut(s)	890
TseI	GCWGC	4 cut(s)	22, 61, 769, 966
Tsp45I	GTSAC	1 cut(s)	890
TspDTI	ATGAA	3 cut(s)	149, 177, 656
TspGWI	ACGGA	1 cut(s)	1047
TspMI	CCCGGG	1 cut(s)	1028
TspRI	CASTG	4 cut(s)	80, 226, 381, 487
Tth111I	GACNNNGTC	1 cut(s)	1057
Vha464I	CTTAAG	2 cut(s)	395, 895
VpaK11BI	GGWCC	2 cut(s)	349, 500
XapI	RAATTY	3 cut(s)	214, 451, 467
XmaI	CCCGGG	1 cut(s)	1028
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	3 cut(s)	545, 809, 849
ZrmI	AGTACT	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.