Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Forward (+)

7984441 .. 7989815

Gene Structure 5375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG090800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGTAAGAATTTACAACCCAGAGCCAGAGGAGATGGTCATCTTCTTTGTAGTGGTCATTTGCATGGCACAAGTCATATTTGAAGCACAGGCCATGACTCTTCCAGCTGATGAGGTGCAAGCCCTTCATGAAATTGCTGAGCAACTGAACAAAAAGGACTGGAATTTGAGCAACCCATGTAGAAATATTCCAACTTTCTCAATCCCACATACGGATCAGTACATGAACACCCTCTTCTGCAACTGTTCTTTCTCTGGCAATGTGTGCCATGTCCAAACCATTTTTCTTGTGGGTCAGGACCTGGATGGTGTGCTTCCACCATCACTGGAAAAACTGGTATTGAAGGATTTTAATATTGAAAAGGAAGCACAGGGGGTTGATAAGGAAGTGATTAAAGTATTTAAAGCAGTTGTCAATGTTAGCACTTTAGAGATCCATTTTTATTGGGCTGGGAAAGGGACAACTAATGCCCCAAAGAGAGGGACATATGGTTCGCTTATATCGGCTATCTCAGTTGAGTCTGAAGCTGCTTTGGAGGCAGGACCTCTAGGGAACAAGGGGGATTATGTTTACAGTCAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

194

Amino Acids

21.54

Weight (kDa)

4.86

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	111 - 170	7e-08	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	222, 427
AcsI	RAATTY	2 cut(s)	9, 163
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	211, 479
AgsI	TTSAA	3 cut(s)	83, 343, 359
AjnI	CCWGG	1 cut(s)	300
AjuI	GAANNNNNNNTTGG	2 cut(s)	267, 299
AloI	GAACNNNNNNTCC	2 cut(s)	475, 507
AluBI	AGCT	2 cut(s)	107, 527
AluI	AGCT	2 cut(s)	107, 527
AlwI	GGATC	2 cut(s)	222, 427
AlwNI	CAGNNNCTG	1 cut(s)	301
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	527
ApoI	RAATTY	2 cut(s)	9, 163
ArsI	GACNNNNNNTTYG	2 cut(s)	475, 507
AspS9I	GGNCC	2 cut(s)	298, 542
AvaII	GGWCC	2 cut(s)	298, 542
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	3 cut(s)	28, 299, 328
BciT130I	CCWGG	1 cut(s)	302
BfaI	CTAG	1 cut(s)	548
BisI	GCNGC	1 cut(s)	528
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	529
Bme1390I	CCNGG	1 cut(s)	302
Bme18I	GGWCC	2 cut(s)	298, 542
BmgT120I	GGNCC	2 cut(s)	298, 542
BmrFI	CCNGG	1 cut(s)	302
Bpu1102I	GCTNAGC	1 cut(s)	138
BsaBI	GATNNNNATC	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 479
Bse1I	ACTGG	3 cut(s)	164, 330, 339
Bse3DI	GCAATG	1 cut(s)	265
Bse8I	GATNNNNATC	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	302
BseGI	GGATG	1 cut(s)	310
BseJI	GATNNNNATC	1 cut(s)	38
BseLI	CCNNNNNNNGG	2 cut(s)	211, 479
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	2 cut(s)	129, 525
BseNI	ACTGG	3 cut(s)	164, 330, 339
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	514
BseYI	CCCAGC	1 cut(s)	449
BshFI	GGCC	1 cut(s)	92
BslFI	GGGAC	2 cut(s)	472, 496
BslI	CCNNNNNNNGG	2 cut(s)	211, 479
BsmFI	GGGAC	2 cut(s)	472, 496
BsnI	GGCC	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	214, 432
Bsp1720I	GCTNAGC	1 cut(s)	138
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	2 cut(s)	130, 524
BspHI	TCATGA	1 cut(s)	127
BspPI	GGATC	2 cut(s)	222, 427
BsrDI	GCAATG	1 cut(s)	265
BsrI	ACTGG	3 cut(s)	164, 330, 339
BssMI	GATC	2 cut(s)	214, 432
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	2 cut(s)	245, 575
Bst6I	CTCTTC	2 cut(s)	105, 239
BstAPI	GCANNNNNTGC	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	2 cut(s)	138, 511
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	2 cut(s)	217, 435
BstMBI	GATC	2 cut(s)	214, 432
BstMWI	GCNNNNNNNGC	2 cut(s)	264, 536
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	514
BstX2I	RGATCY	1 cut(s)	432
BstYI	RGATCY	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	323
Cac8I	GCNNGC	1 cut(s)	120
CaiI	CAGNNNCTG	1 cut(s)	301
CciI	TCATGA	1 cut(s)	127
Cfr13I	GGNCC	2 cut(s)	298, 542
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	6 cut(s)	64, 94, 128, 177, 223, 269
CviJI	RGCY	7 cut(s)	25, 92, 107, 122, 449, 506, 527
CviKI_1	RGCY	7 cut(s)	25, 92, 107, 122, 449, 506, 527
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	2 cut(s)	138, 511
DpnI	GATC	2 cut(s)	216, 434
DpnII	GATC	2 cut(s)	214, 432
DraI	TTTAAA	1 cut(s)	403
Eam1104I	CTCTTC	2 cut(s)	105, 239
EarI	CTCTTC	2 cut(s)	105, 239
Eco47I	GGWCC	2 cut(s)	298, 542
Eco57I	CTGAAG	1 cut(s)	543
EcoO109I	RGGNCCY	2 cut(s)	298, 542
EcoRII	CCWGG	1 cut(s)	300
FaeI	CATG	6 cut(s)	67, 97, 131, 180, 226, 272
FaqI	GGGAC	2 cut(s)	472, 496
FatI	CATG	6 cut(s)	63, 93, 127, 176, 222, 268
FauNDI	CATATG	1 cut(s)	487
Fnu4HI	GCNGC	1 cut(s)	528
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	528
FspBI	CTAG	1 cut(s)	548
GluI	GCNGC	1 cut(s)	528
GsaI	CCCAGC	1 cut(s)	453
HaeIII	GGCC	1 cut(s)	92
Hin1II	CATG	6 cut(s)	67, 97, 131, 180, 226, 272
HinfI	GANTC	2 cut(s)	97, 518
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	1 cut(s)	523
Hpy188III	TCNNGA	2 cut(s)	128, 296
Hpy8I	GTNNAC	1 cut(s)	571
HpyAV	CCTTC	2 cut(s)	134, 337
HpyCH4III	ACNGT	2 cut(s)	245, 575
HpyCH4V	TGCA	3 cut(s)	63, 118, 240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	264, 536
HpyF3I	CTNAG	2 cut(s)	138, 511
Hsp92II	CATG	6 cut(s)	67, 97, 131, 180, 226, 272
Kzo9I	GATC	2 cut(s)	214, 432
Lsp1109I	GCAGC	1 cut(s)	514
MaeI	CTAG	1 cut(s)	548
MalI	GATC	2 cut(s)	216, 434
MboI	GATC	2 cut(s)	214, 432
MboII	GAAGA	3 cut(s)	34, 92, 226
MflI	RGATCY	1 cut(s)	432
MluCI	AATT	3 cut(s)	9, 132, 163
MlyI	GAGTC	2 cut(s)	91, 527
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	6 cut(s)	22, 106, 242, 473, 529, 555
MseI	TTAA	3 cut(s)	351, 393, 402
MslI	CAYNNNNRTG	1 cut(s)	62
MspA1I	CMGCKG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	2 cut(s)	264, 536
NdeI	CATATG	1 cut(s)	487
NdeII	GATC	2 cut(s)	214, 432
NlaIII	CATG	6 cut(s)	67, 97, 131, 180, 226, 272
PagI	TCATGA	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	529
PleI	GAGTC	2 cut(s)	91, 526
PpsI	GAGTC	2 cut(s)	91, 526
PpuMI	RGGWCCY	2 cut(s)	298, 542
Psp5II	RGGWCCY	2 cut(s)	298, 542
Psp6I	CCWGG	1 cut(s)	300
PspFI	CCCAGC	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	300
PspPI	GGNCC	2 cut(s)	298, 542
PspPPI	RGGWCCY	2 cut(s)	298, 542
PstNI	CAGNNNCTG	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	432
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	3 cut(s)	351, 393, 402
SatI	GCNGC	1 cut(s)	528
Sau3AI	GATC	2 cut(s)	214, 432
Sau96I	GGNCC	2 cut(s)	298, 542
SchI	GAGTC	2 cut(s)	91, 527
ScrFI	CCNGG	1 cut(s)	302
SetI	ASST	5 cut(s)	109, 117, 303, 529, 547
SinI	GGWCC	2 cut(s)	298, 542
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	3 cut(s)	9, 132, 163
SspI	AATATT	2 cut(s)	187, 355
SspMI	CTAG	1 cut(s)	548
StyD4I	CCNGG	1 cut(s)	300
TaaI	ACNGT	2 cut(s)	245, 575
TasI	AATT	3 cut(s)	9, 132, 163
TatI	WGTACW	1 cut(s)	219
Tru1I	TTAA	3 cut(s)	351, 393, 402
Tru9I	TTAA	3 cut(s)	351, 393, 402
TscAI	CASTG	1 cut(s)	330
TseI	GCWGC	1 cut(s)	527
TspDTI	ATGAA	3 cut(s)	116, 144, 239
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	330
VpaK11BI	GGWCC	2 cut(s)	298, 542
XapI	RAATTY	2 cut(s)	9, 163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XspI	CTAG	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.