Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Forward (+)

8315433 .. 8350088

Gene Structure 34656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG103500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAACCTCAACTTGGTGGTGATACTAGTTCACTGCAGTTTTGGATCAGTCAAAGTTGAAGCTCTTTCGACTCGTCTTCCTGATACTGAAGTGCAAGCCCTACGAGAAATTGCTACACAAATAAAGAAGAAAGACTGGGACTTCACGGTAGACCCGTGCCAGAATGACACAACCCACCCAAGCTGGGCTACCCCAGTGTCTGCTGACAGGCCTTTATTCGGCAACAATCTCACTTGCAACTGCTCCTTCCCTGACGGCTCATGCCATGTCATCAACATTATTCTTAAAGGCCAAGATCTTGCTGGTGTACTTCCACCATCTATTGCAAAGTTACCCTACCTTACACAAATAATGCTGAGGAGCTGTGGTTTATCAGGACCTATTCCTGATTTAACAGCGATGACAGTAGTAAATATCATAGATCTCAGCTTCAACCAATTGGAAGGAAGTTTTCCTGATCTTGAAGCTATGACTCTGGATTCGGACAATTTGCAGAACTTGTGTCTAGCAGACAATTCTATTAGTATTGCTGTTAACTACTCATTGCATATAAATTGTGGTGGACGAGAAAGCACGATTGAAGGAGTCAAATTTGAAGATGATACAGATCTTGGAGGTGGAGCAAAATTTCTTCCAAGACCTAACTGGGGAACCAAGTTCAACCATTCCAAAACGAAGATATATATTGTGGTTGGAGTTTCAGTTGGAGCTACGGTCCAGAGGATGATCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

244

Amino Acids

26.48

Weight (kDa)

5.14

Isoelectric Point (pI)

30.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	150
AclWI	GGATC	1 cut(s)	52
AcsI	RAATTY	2 cut(s)	590, 626
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	309
AfiI	CCNNNNNNNGG	4 cut(s)	13, 184, 218, 647
AgsI	TTSAA	6 cut(s)	59, 433, 464, 581, 596, 661
AhlI	ACTAGT	1 cut(s)	25
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	6 cut(s)	62, 183, 363, 429, 467, 710
AluI	AGCT	6 cut(s)	62, 183, 363, 429, 467, 710
AlwI	GGATC	1 cut(s)	52
AlwNI	CAGNNNCTG	1 cut(s)	200
AoxI	GGCC	2 cut(s)	209, 289
ApoI	RAATTY	2 cut(s)	590, 626
ArsI	GACNNNNNNTTYG	2 cut(s)	463, 495
AspS9I	GGNCC	2 cut(s)	377, 715
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	2 cut(s)	377, 715
BaeI	ACNNNNGTAYC	2 cut(s)	75, 108
BbsI	GAAGAC	1 cut(s)	68
BbvCI	CCTCAGC	1 cut(s)	356
BccI	CCATC	1 cut(s)	325
BceAI	ACGGC	1 cut(s)	271
BcuI	ACTAGT	1 cut(s)	25
BfaI	CTAG	2 cut(s)	26, 506
BfmI	CTRYAG	1 cut(s)	34
BglII	AGATCT	3 cut(s)	295, 421, 607
Bme18I	GGWCC	2 cut(s)	377, 715
BmgT120I	GGNCC	2 cut(s)	377, 715
BmiI	GGNNCC	1 cut(s)	652
BmrI	ACTGGG	3 cut(s)	145, 188, 655
BmuI	ACTGGG	3 cut(s)	145, 188, 655
BpiI	GAAGAC	1 cut(s)	68
Bpu10I	CCTNAGC	1 cut(s)	356
BsaBI	GATNNNNATC	1 cut(s)	606
BsaXI	ACNNNNNCTCC	6 cut(s)	352, 382, 687, 699, 717, 729
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 184, 218, 647
Bse1I	ACTGG	3 cut(s)	140, 194, 650
Bse3DI	GCAATG	1 cut(s)	542
Bse8I	GATNNNNATC	1 cut(s)	606
BseGI	GGATG	1 cut(s)	729
BseJI	GATNNNNATC	1 cut(s)	606
BseLI	CCNNNNNNNGG	4 cut(s)	13, 184, 218, 647
BseMI	GCAATG	1 cut(s)	542
BseMII	CTCAG	2 cut(s)	347, 439
BseNI	ACTGG	3 cut(s)	140, 194, 650
BseRI	GAGGAG	1 cut(s)	373
BseYI	CCCAGC	1 cut(s)	183
BshFI	GGCC	2 cut(s)	211, 291
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	4 cut(s)	13, 184, 218, 647
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	211, 291
Bsp143I	GATC	6 cut(s)	44, 295, 421, 457, 607, 726
BspANI	GGCC	2 cut(s)	211, 291
BspCNI	CTCAG	2 cut(s)	348, 438
BspLI	GGNNCC	1 cut(s)	652
BspMAI	CTGCAG	1 cut(s)	38
BspPI	GGATC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	542
BsrI	ACTGG	3 cut(s)	140, 194, 650
BssMI	GATC	6 cut(s)	44, 295, 421, 457, 607, 726
Bst4CI	ACNGT	3 cut(s)	148, 406, 715
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	356, 425
BstF5I	GGATG	1 cut(s)	729
BstKTI	GATC	6 cut(s)	47, 298, 424, 460, 610, 729
BstMBI	GATC	6 cut(s)	44, 295, 421, 457, 607, 726
BstSFI	CTRYAG	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	3 cut(s)	295, 421, 607
BstYI	RGATCY	3 cut(s)	295, 421, 607
BsuRI	GGCC	2 cut(s)	211, 291
BtgZI	GCGATG	1 cut(s)	413
BtsCI	GGATG	1 cut(s)	729
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	31, 201
Cac8I	GCNNGC	1 cut(s)	96
CaiI	CAGNNNCTG	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	377, 715
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	2 cut(s)	261, 266
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	2 cut(s)	356, 425
DpnI	GATC	6 cut(s)	46, 297, 423, 459, 609, 728
DpnII	GATC	6 cut(s)	44, 295, 421, 457, 607, 726
Eco147I	AGGCCT	1 cut(s)	211
Eco47I	GGWCC	2 cut(s)	377, 715
Eco57I	CTGAAG	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	377
FaeI	CATG	2 cut(s)	264, 269
FaiI	YATR	8 cut(s)	262, 267, 419, 470, 549, 551, 682, 684
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	2 cut(s)	260, 265
FblI	GTMKAC	1 cut(s)	150
FspBI	CTAG	2 cut(s)	26, 506
GsaI	CCCAGC	1 cut(s)	187
HaeIII	GGCC	2 cut(s)	211, 291
Hin1II	CATG	2 cut(s)	264, 269
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HinfI	GANTC	4 cut(s)	70, 472, 479, 585
HpaI	GTTAAC	1 cut(s)	535
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	5 cut(s)	31, 151, 308, 535, 563
Hpy188I	TCNGA	1 cut(s)	484
Hpy188III	TCNNGA	7 cut(s)	80, 375, 386, 455, 461, 476, 718
Hpy8I	GTNNAC	5 cut(s)	31, 151, 308, 535, 563
HpyAV	CCTTC	3 cut(s)	256, 437, 575
HpyCH4III	ACNGT	3 cut(s)	148, 406, 715
HpyCH4V	TGCA	6 cut(s)	36, 94, 237, 326, 493, 547
HpyF3I	CTNAG	2 cut(s)	356, 425
Hsp92II	CATG	2 cut(s)	264, 269
KspAI	GTTAAC	1 cut(s)	535
Kzo9I	GATC	6 cut(s)	44, 295, 421, 457, 607, 726
LmnI	GCTCC	4 cut(s)	248, 360, 620, 707
MaeI	CTAG	2 cut(s)	26, 506
MaeIII	GTNAC	1 cut(s)	330
MalI	GATC	6 cut(s)	46, 297, 423, 459, 609, 728
MboI	GATC	6 cut(s)	44, 295, 421, 457, 607, 726
MboII	GAAGA	5 cut(s)	68, 139, 608, 623, 688
MfeI	CAATTG	1 cut(s)	437
MflI	RGATCY	3 cut(s)	295, 421, 607
MluCI	AATT	7 cut(s)	108, 437, 487, 514, 553, 590, 626
MlyI	GAGTC	3 cut(s)	64, 466, 594
MmeI	TCCRAC	2 cut(s)	673, 685
MnlI	CCTC	4 cut(s)	17, 351, 608, 714
MseI	TTAA	3 cut(s)	285, 392, 534
MunI	CAATTG	1 cut(s)	437
NdeII	GATC	6 cut(s)	44, 295, 421, 457, 607, 726
NlaIII	CATG	2 cut(s)	264, 269
NlaIV	GGNNCC	1 cut(s)	652
PceI	AGGCCT	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	479
PleI	GAGTC	3 cut(s)	64, 466, 593
PpsI	GAGTC	3 cut(s)	64, 466, 593
PpuMI	RGGWCCY	1 cut(s)	377
Psp5II	RGGWCCY	1 cut(s)	377
PspFI	CCCAGC	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	652
PspPI	GGNCC	2 cut(s)	377, 715
PspPPI	RGGWCCY	1 cut(s)	377
PstI	CTGCAG	1 cut(s)	38
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	3 cut(s)	295, 421, 607
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SaqAI	TTAA	3 cut(s)	285, 392, 534
Sau3AI	GATC	6 cut(s)	44, 295, 421, 457, 607, 726
Sau96I	GGNCC	2 cut(s)	377, 715
SchI	GAGTC	3 cut(s)	64, 466, 594
SfcI	CTRYAG	1 cut(s)	34
SinI	GGWCC	2 cut(s)	377, 715
SpeI	ACTAGT	1 cut(s)	25
Sse9I	AATT	7 cut(s)	108, 437, 487, 514, 553, 590, 626
SseBI	AGGCCT	1 cut(s)	211
SspMI	CTAG	2 cut(s)	26, 506
StuI	AGGCCT	1 cut(s)	211
TaaI	ACNGT	3 cut(s)	148, 406, 715
TaqI	TCGA	1 cut(s)	68
TasI	AATT	7 cut(s)	108, 437, 487, 514, 553, 590, 626
TatI	WGTACW	1 cut(s)	307
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	3 cut(s)	285, 392, 534
Tru9I	TTAA	3 cut(s)	285, 392, 534
TscAI	CASTG	2 cut(s)	38, 201
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	38, 201
VpaK11BI	GGWCC	2 cut(s)	377, 715
XapI	RAATTY	2 cut(s)	590, 626
XcmI	CCANNNNNNNNNTGG	2 cut(s)	299, 642
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	2 cut(s)	26, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.