Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Reverse (-)

28036249 .. 28039268

Gene Structure 3020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31314

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAAGATGGCAAGTAGAGATAAGATGATCATGATATTGGTTTTCTGCTTCACATGCATAAACTCGGTCAAAGTTGAAGCACAGTCTGCAACTCTTATTGCTTCAGAAGTGGAAGCTCTGAAAGAAATAGCTACACAAATAGGAAAGAAGGATTGGAACTTTAGCGTCGACCCTTGCAGCAATGACACGAGCTGGGCCACCCCAATATCTGCTGCCAGGCCTCTGTTCAACAACACTGTCACCTGCAACTGCTCCTTCTCTGATGGTGCATGCCATGTCACCAACATCTTTCTTAAAGGGCAAGACCTTGCTGGTGTGCTTCCACCGTCTATTGCAAAGTTACCCTACCTGATAAATGTTGATTTCACAAGGAACTACCTAAATGGCAGCATACCGCGAGAATGGGCACCGACGAAGTTGCAATATCTGTCCATTACTGTGAACAACTTATCTGGACCAATCCCAAGCTACCTGGGAAACATTACCACTCTGACTTATCTGAGCATAGAGAATAACATGTTCTCAGGAACTGTTCCTCCTGAGCTTGGAAACTTGGTTAACTTGCAGAATCTTATTCTTAGTGCAAACAATCTCACAGGAGAATTGCCGGCGGTTCTTATGAATCTGACTAAGTTAACAGAACTGAGGATCAGCAGCAACAACTTCACTGGAAGAATGCCCGACTTTTTTCAAAGTTGGAATCAACTTCAGAAATTAGAGATCCAAGCTAGCGGTCTACAAGGCCCCATTCCATCTAGCATTTCTGTCTTGAGTAATTTAACAGAACTAAGGATCAGTGACTTAAATGGAGGGGGTTCAGCATTTCCAAACTTGAGGAATATGATAAGCTTGCAAAGATTAATGCTCAGGAGCTGTAACTTATCTGGACCTATTCCTTCTGATTTATCAGCAATGTCACAGTTGAAAACATTAGATCTAAGCTTCAACAGATTGGAGGGGAGCATTCCTGATTTGGCAGATCTGACACCCTTGCAGAACCTGTATCTAACAAGCAACTTGCTTACTGGATCTATTCCAGACTGGATCAAGAGCAGAGATAATCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

355

Amino Acids

38.91

Weight (kDa)

5.94

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	156 - 349	2.6e-13	Leucine-rich repeat region
LRR_4	PF12799	307 - 343	6.9e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	251
Acc36I	ACCTGC	1 cut(s)	251
AccB1I	GGYRCC	1 cut(s)	406
AccI	GTMKAC	2 cut(s)	168, 736
AccII	CGCG	1 cut(s)	397
AciI	CCGC	3 cut(s)	395, 611, 732
AclWI	GGATC	5 cut(s)	656, 715, 800, 1036, 1052
AcuI	CTGAAG	2 cut(s)	87, 692
AfiI	CCNNNNNNNGG	1 cut(s)	545
AflIII	ACRYGT	1 cut(s)	516
AgsI	TTSAA	5 cut(s)	77, 229, 692, 925, 946
AjnI	CCWGG	2 cut(s)	215, 471
AjuI	GAANNNNNNNTTGG	2 cut(s)	136, 168
AloI	GAACNNNNNNTCC	2 cut(s)	520, 552
AluBI	AGCT	9 cut(s)	116, 131, 192, 468, 544, 728, 849, 873, 942
AluI	AGCT	9 cut(s)	116, 131, 192, 468, 544, 728, 849, 873, 942
AlwI	GGATC	5 cut(s)	656, 715, 800, 1036, 1052
AlwNI	CAGNNNCTG	3 cut(s)	530, 873, 1000
AoxI	GGCC	3 cut(s)	195, 218, 742
ApeKI	GCWGC	4 cut(s)	177, 212, 387, 654
AseI	ATTAAT	1 cut(s)	860
AspS9I	GGNCC	4 cut(s)	195, 455, 743, 887
AsuHPI	GGTGA	2 cut(s)	232, 271
AsuNHI	GCTAGC	1 cut(s)	728
AvaII	GGWCC	2 cut(s)	455, 887
BaeGI	GKGCMC	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	406
BauI	CACGAG	1 cut(s)	187
BbvI	GCAGC	4 cut(s)	189, 199, 399, 666
BccI	CCATC	2 cut(s)	257, 760
BcgI	CGANNNNNNTGC	2 cut(s)	400, 434
BciT130I	CCWGG	2 cut(s)	217, 473
BclI	TGATCA	1 cut(s)	27
BfaI	CTAG	3 cut(s)	729, 756, 1066
BfuAI	ACCTGC	1 cut(s)	251
BglII	AGATCT	2 cut(s)	934, 979
BisI	GCNGC	4 cut(s)	178, 213, 388, 655
BlsI	GCNGC	4 cut(s)	179, 214, 389, 656
Bme1390I	CCNGG	2 cut(s)	217, 473
Bme18I	GGWCC	2 cut(s)	455, 887
BmgT120I	GGNCC	4 cut(s)	195, 455, 743, 887
BmiI	GGNNCC	2 cut(s)	408, 745
BmrFI	CCNGG	2 cut(s)	217, 473
BmtI	GCTAGC	1 cut(s)	732
Bpu10I	CCTNAGC	2 cut(s)	540, 866
BpuEI	CTTGAG	2 cut(s)	790, 853
BsaJI	CCNNGG	1 cut(s)	472
BsaXI	ACNNNNNCTCC	2 cut(s)	520, 550
Bsc4I	CCNNNNNNNGG	1 cut(s)	545
Bse118I	RCCGGY	1 cut(s)	607
Bse1I	ACTGG	3 cut(s)	673, 1030, 1046
Bse3DI	GCAATG	2 cut(s)	187, 918
BseBI	CCWGG	2 cut(s)	217, 473
BseDI	CCNNGG	1 cut(s)	472
BseLI	CCNNNNNNNGG	1 cut(s)	545
BseMI	GCAATG	2 cut(s)	187, 918
BseMII	CTCAG	5 cut(s)	491, 531, 537, 635, 880
BseNI	ACTGG	3 cut(s)	673, 1030, 1046
BseSI	GKGCMC	1 cut(s)	409
BseXI	GCAGC	4 cut(s)	189, 199, 399, 666
BseYI	CCCAGC	1 cut(s)	192
Bsh1236I	CGCG	1 cut(s)	397
BshFI	GGCC	3 cut(s)	197, 220, 744
BshNI	GGYRCC	1 cut(s)	406
BsiSI	CCGG	1 cut(s)	608
BslI	CCNNNNNNNGG	1 cut(s)	545
BsmI	GAATGC	2 cut(s)	681, 963
BsnI	GGCC	3 cut(s)	197, 220, 744
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	8 cut(s)	27, 648, 720, 792, 934, 979, 1028, 1044
BspACI	CCGC	3 cut(s)	395, 611, 732
BspANI	GGCC	3 cut(s)	197, 220, 744
BspCNI	CTCAG	5 cut(s)	492, 532, 536, 636, 879
BspFNI	CGCG	1 cut(s)	397
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	408, 745
BspMI	ACCTGC	1 cut(s)	251
BspOI	GCTAGC	1 cut(s)	732
BspPI	GGATC	5 cut(s)	656, 715, 800, 1036, 1052
BspT107I	GGYRCC	1 cut(s)	406
BsrDI	GCAATG	2 cut(s)	187, 918
BsrFI	RCCGGY	1 cut(s)	607
BsrI	ACTGG	3 cut(s)	673, 1030, 1046
BssAI	RCCGGY	1 cut(s)	607
BssECI	CCNNGG	1 cut(s)	472
BssMI	GATC	8 cut(s)	27, 648, 720, 792, 934, 979, 1028, 1044
BssSI	CACGAG	1 cut(s)	187
Bst2BI	CACGAG	1 cut(s)	187
Bst2UI	CCWGG	2 cut(s)	217, 473
Bst4CI	ACNGT	6 cut(s)	84, 238, 327, 439, 532, 921
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstC8I	GCNNGC	4 cut(s)	271, 609, 730, 851
BstDEI	CTNAG	9 cut(s)	500, 523, 540, 578, 630, 644, 788, 866, 938
BstFNI	CGCG	1 cut(s)	397
BstKTI	GATC	8 cut(s)	30, 651, 723, 795, 937, 982, 1031, 1047
BstMBI	GATC	8 cut(s)	27, 648, 720, 792, 934, 979, 1028, 1044
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 86
BstNI	CCWGG	2 cut(s)	217, 473
BstNSI	RCATGY	3 cut(s)	57, 273, 520
BstSCI	CCNGG	2 cut(s)	215, 471
BstSLI	GKGCMC	1 cut(s)	409
BstUI	CGCG	1 cut(s)	397
BstV1I	GCAGC	4 cut(s)	189, 199, 399, 666
BstX2I	RGATCY	4 cut(s)	720, 934, 979, 1028
BstYI	RGATCY	4 cut(s)	720, 934, 979, 1028
BsuRI	GGCC	3 cut(s)	197, 220, 744
BtsIMutI	CAGTG	3 cut(s)	234, 666, 802
BveI	ACCTGC	1 cut(s)	251
Cac8I	GCNNGC	4 cut(s)	271, 609, 730, 851
CaiI	CAGNNNCTG	3 cut(s)	530, 873, 1000
CciI	TCATGA	1 cut(s)	30
Cfr10I	RCCGGY	1 cut(s)	607
Cfr13I	GGNCC	4 cut(s)	195, 455, 743, 887
CseI	GACGC	1 cut(s)	154
CviAII	CATG	5 cut(s)	31, 54, 270, 275, 517
DdeI	CTNAG	9 cut(s)	500, 523, 540, 578, 630, 644, 788, 866, 938
DpnI	GATC	8 cut(s)	29, 650, 722, 794, 936, 981, 1030, 1046
DpnII	GATC	8 cut(s)	27, 648, 720, 792, 934, 979, 1028, 1044
Eco147I	AGGCCT	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	455, 887
Eco57I	CTGAAG	2 cut(s)	87, 692
EcoO109I	RGGNCCY	1 cut(s)	743
EcoRII	CCWGG	2 cut(s)	215, 471
EcoT22I	ATGCAT	1 cut(s)	59
FaeI	CATG	5 cut(s)	34, 57, 273, 278, 520
FatI	CATG	5 cut(s)	30, 53, 269, 274, 516
FbaI	TGATCA	1 cut(s)	27
FblI	GTMKAC	2 cut(s)	168, 736
Fnu4HI	GCNGC	4 cut(s)	178, 213, 388, 655
Fsp4HI	GCNGC	4 cut(s)	178, 213, 388, 655
FspBI	CTAG	3 cut(s)	729, 756, 1066
GluI	GCNGC	4 cut(s)	178, 213, 388, 655
GsaI	CCCAGC	1 cut(s)	196
HaeIII	GGCC	3 cut(s)	197, 220, 744
HapII	CCGG	1 cut(s)	608
HgaI	GACGC	1 cut(s)	154
Hin1II	CATG	5 cut(s)	34, 57, 273, 278, 520
HincII	GTYRAC	3 cut(s)	169, 559, 636
HindII	GTYRAC	3 cut(s)	169, 559, 636
HindIII	AAGCTT	2 cut(s)	847, 940
HinfI	GANTC	3 cut(s)	568, 622, 700
HpaI	GTTAAC	2 cut(s)	559, 636
HpaII	CCGG	1 cut(s)	608
HphI	GGTGA	2 cut(s)	232, 271
Hpy166II	GTNNAC	5 cut(s)	169, 442, 559, 636, 737
Hpy188I	TCNGA	9 cut(s)	106, 120, 262, 492, 501, 627, 711, 901, 984
Hpy8I	GTNNAC	5 cut(s)	169, 442, 559, 636, 737
Hpy99I	CGWCG	2 cut(s)	170, 415
HpyAV	CCTTC	3 cut(s)	142, 265, 906
HpyCH4III	ACNGT	6 cut(s)	84, 238, 327, 439, 532, 921
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 86
HpyF3I	CTNAG	9 cut(s)	500, 523, 540, 578, 630, 644, 788, 866, 938
Hsp92II	CATG	5 cut(s)	34, 57, 273, 278, 520
KroI	GCCGGC	1 cut(s)	607
KroNI	GCCGGC	1 cut(s)	609
Ksp22I	TGATCA	1 cut(s)	27
KspAI	GTTAAC	2 cut(s)	559, 636
Kzo9I	GATC	8 cut(s)	27, 648, 720, 792, 934, 979, 1028, 1044
LmnI	GCTCC	3 cut(s)	257, 870, 960
Lsp1109I	GCAGC	4 cut(s)	189, 199, 399, 666
MaeI	CTAG	3 cut(s)	729, 756, 1066
MaeIII	GTNAC	6 cut(s)	238, 277, 339, 797, 875, 915
MalI	GATC	8 cut(s)	29, 650, 722, 794, 936, 981, 1030, 1046
MboI	GATC	8 cut(s)	27, 648, 720, 792, 934, 979, 1028, 1044
MboII	GAAGA	2 cut(s)	16, 684
MflI	RGATCY	4 cut(s)	720, 934, 979, 1028
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	3 cut(s)	602, 713, 775
MmeI	TCCRAC	1 cut(s)	677
MnlI	CCTC	6 cut(s)	231, 546, 639, 803, 828, 949
Mph1103I	ATGCAT	1 cut(s)	59
MroNI	GCCGGC	1 cut(s)	607
MseI	TTAA	6 cut(s)	294, 558, 635, 779, 803, 860
MslI	CAYNNNNRTG	1 cut(s)	437
MspI	CCGG	1 cut(s)	608
MspR9I	CCNGG	2 cut(s)	217, 473
Mva1269I	GAATGC	2 cut(s)	681, 963
MvaI	CCWGG	2 cut(s)	217, 473
MvnI	CGCG	1 cut(s)	397
MwoI	GCNNNNNNNGC	2 cut(s)	54, 86
NaeI	GCCGGC	1 cut(s)	609
NdeII	GATC	8 cut(s)	27, 648, 720, 792, 934, 979, 1028, 1044
NgoMIV	GCCGGC	1 cut(s)	607
NheI	GCTAGC	1 cut(s)	728
NlaIII	CATG	5 cut(s)	34, 57, 273, 278, 520
NlaIV	GGNNCC	2 cut(s)	408, 745
NmuCI	GTSAC	4 cut(s)	238, 277, 797, 915
NsiI	ATGCAT	1 cut(s)	59
NspI	RCATGY	3 cut(s)	57, 273, 520
PaeI	GCATGC	1 cut(s)	273
PagI	TCATGA	1 cut(s)	30
PaqCI	CACCTGC	1 cut(s)	251
PceI	AGGCCT	1 cut(s)	220
PciI	ACATGT	1 cut(s)	516
PctI	GAATGC	2 cut(s)	681, 963
PdiI	GCCGGC	1 cut(s)	609
PfeI	GAWTC	3 cut(s)	568, 622, 700
PkrI	GCNGC	4 cut(s)	179, 214, 389, 656
PscI	ACATGT	1 cut(s)	516
PshBI	ATTAAT	1 cut(s)	860
Psp6I	CCWGG	2 cut(s)	215, 471
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	2 cut(s)	215, 471
PspN4I	GGNNCC	2 cut(s)	408, 745
PspPI	GGNCC	4 cut(s)	195, 455, 743, 887
PstNI	CAGNNNCTG	3 cut(s)	530, 873, 1000
PsuI	RGATCY	4 cut(s)	720, 934, 979, 1028
RseI	CAYNNNNRTG	1 cut(s)	437
SalI	GTCGAC	1 cut(s)	167
SaqAI	TTAA	6 cut(s)	294, 558, 635, 779, 803, 860
SatI	GCNGC	4 cut(s)	178, 213, 388, 655
Sau3AI	GATC	8 cut(s)	27, 648, 720, 792, 934, 979, 1028, 1044
Sau96I	GGNCC	4 cut(s)	195, 455, 743, 887
ScrFI	CCNGG	2 cut(s)	217, 473
SduI	GDGCHC	1 cut(s)	409
SinI	GGWCC	2 cut(s)	455, 887
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	2 cut(s)	769, 832
SmoI	CTYRAG	2 cut(s)	769, 832
SphI	GCATGC	1 cut(s)	273
Sse9I	AATT	3 cut(s)	602, 713, 775
SseBI	AGGCCT	1 cut(s)	220
SsiI	CCGC	3 cut(s)	395, 611, 732
SspMI	CTAG	3 cut(s)	729, 756, 1066
StuI	AGGCCT	1 cut(s)	220
StyD4I	CCNGG	2 cut(s)	215, 471
TaaI	ACNGT	6 cut(s)	84, 238, 327, 439, 532, 921
TaqI	TCGA	1 cut(s)	168
TaqII	GACCGA	1 cut(s)	55
TasI	AATT	3 cut(s)	602, 713, 775
TfiI	GAWTC	3 cut(s)	568, 622, 700
Tru1I	TTAA	6 cut(s)	294, 558, 635, 779, 803, 860
Tru9I	TTAA	6 cut(s)	294, 558, 635, 779, 803, 860
TscAI	CASTG	3 cut(s)	241, 673, 802
TseFI	GTSAC	4 cut(s)	238, 277, 797, 915
TseI	GCWGC	4 cut(s)	177, 212, 387, 654
Tsp45I	GTSAC	4 cut(s)	238, 277, 797, 915
TspDTI	ATGAA	2 cut(s)	17, 635
TspRI	CASTG	3 cut(s)	241, 673, 802
VpaK11BI	GGWCC	2 cut(s)	455, 887
VspI	ATTAAT	1 cut(s)	860
XceI	RCATGY	3 cut(s)	57, 273, 520
XmiI	GTMKAC	2 cut(s)	168, 736
XspI	CTAG	3 cut(s)	729, 756, 1066
Zsp2I	ATGCAT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.