Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8436183.1

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Forward (+)

236 .. 899

Gene Structure 664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8436183.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atgaagagctttgcagctgaaacagagactggaatgccaactgggttgtcaagaaaaatggcagaagttctcaacagtcaaaaacccatcttcttttgctatgtggctttgcttgttgtccttatttgcattgtacccatcaaatctcaagcacaatctgggactcttgcacctgatgaagtggaagcccttcgtgaaatagctgaacaactgaataagaaagactggaatttcagtgacccatgtagcaatgttcctacgttttcgagcccacatactaatcagtataacaatactttggtctgcaattgctccatctccagcaatgtatgccacattgaaagcatgtatgagccttttacaagccccacttttgttatgtttgctcaattcagtgaagtattgaagttcataggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

139

Amino Acids

15.44

Weight (kDa)

5.07

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	229
AfaI	GTAC	1 cut(s)	135
AgsI	TTSAA	2 cut(s)	341, 406
AluBI	AGCT	3 cut(s)	9, 17, 203
AluI	AGCT	3 cut(s)	9, 17, 203
Alw26I	GTCTC	1 cut(s)	20
AlwNI	CAGNNNCTG	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	229
Asp700I	GAANNNNTTC	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	3 cut(s)	95, 146, 323
BcoDI	GTCTC	1 cut(s)	20
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmrI	ACTGGG	1 cut(s)	51
BmuI	ACTGGG	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	304
BpuEI	CTTGAG	1 cut(s)	132
Bse1I	ACTGG	3 cut(s)	34, 46, 230
Bse3DI	GCAATG	2 cut(s)	256, 331
BseMI	GCAATG	2 cut(s)	256, 331
BseNI	ACTGG	3 cut(s)	34, 46, 230
BseXI	GCAGC	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	175
BsmI	GAATGC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	272
BsrDI	GCAATG	2 cut(s)	256, 331
BsrI	ACTGG	3 cut(s)	34, 46, 230
Bst4CI	ACNGT	1 cut(s)	77
BstAPI	GCANNNNNTGC	1 cut(s)	330
BstMAI	GTCTC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstNSI	RCATGY	1 cut(s)	349
BstV1I	GCAGC	1 cut(s)	26
BtsIMutI	CAGTG	2 cut(s)	241, 400
CaiI	CAGNNNCTG	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	2 cut(s)	243, 346
CviJI	RGCY	8 cut(s)	9, 17, 107, 188, 203, 270, 355, 366
CviKI_1	RGCY	8 cut(s)	9, 17, 107, 188, 203, 270, 355, 366
CviQI	GTAC	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	272
EcoT38I	GRGCYC	1 cut(s)	272
FaeI	CATG	2 cut(s)	246, 349
FaiI	YATR	9 cut(s)	102, 244, 276, 288, 331, 347, 351, 380, 413
FalI	AAGNNNNNCTT	2 cut(s)	355, 387
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	2 cut(s)	242, 345
Fnu4HI	GCNGC	1 cut(s)	15
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	304
Hin1II	CATG	2 cut(s)	246, 349
HinfI	GANTC	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	51, 194
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	4 cut(s)	14, 129, 170, 306
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	2 cut(s)	246, 349
LmnI	GCTCC	1 cut(s)	317
LpnPI	CCDG	6 cut(s)	15, 27, 144, 186, 211, 334
Lsp1109I	GCAGC	1 cut(s)	26
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	236
MboII	GAAGA	2 cut(s)	16, 82
MfeI	CAATTG	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	3 cut(s)	229, 307, 389
MlyI	GAGTC	1 cut(s)	157
MroXI	GAANNNNTTC	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	17
MunI	CAATTG	1 cut(s)	307
Mva1269I	GAATGC	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	330
NlaIII	CATG	2 cut(s)	246, 349
NmuCI	GTSAC	1 cut(s)	236
NspI	RCATGY	1 cut(s)	349
PctI	GAATGC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	189
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PstNI	CAGNNNCTG	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SatI	GCNGC	1 cut(s)	15
SchI	GAGTC	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	6 cut(s)	11, 19, 175, 205, 263, 418
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
Sse9I	AATT	3 cut(s)	229, 307, 389
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	1 cut(s)	266
TasI	AATT	3 cut(s)	229, 307, 389
TscAI	CASTG	2 cut(s)	241, 400
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	3 cut(s)	17, 192, 400
TspRI	CASTG	2 cut(s)	241, 400
XapI	RAATTY	1 cut(s)	229
XceI	RCATGY	1 cut(s)	349
XmnI	GAANNNNTTC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.