Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Reverse (-)

17943242 .. 17944315

Gene Structure 1074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAACTTGACGAGAACTCCTCAAACAGAATCAATGGCGACTACTCATGCAGTGATGGGTGTGATCAGGTCAGTTATGCCTGCTTTTCGCAATAAAAACGACAAAATCGCTTTCGTAGTTCACGCTTCTTTAGCCGTTTCGGGTTTCATTCTCACTTCAACCGGACGTCCTGCCTTCGCCCACGACGCTCTGTCCTCATCGACCACTCAGTGTTTGGTTGGGATTGAAGGGTGGAACGAATTCGACGAGGAGTATGCGTTTGTTTATAAATGTCCGGTGAAGAGATATCTGGTTAAGTGCTTGGCAATGAATGATAAACTTCTTGTTGATGCAATAGCTGAAGATGGAAAAGAATTTGGCCATCTCCAAATTGAAGTTGGGAATTATATTGATGAATCCGGCGAGGAAGGCGATTACGATACACAATTCAAGAATTTTGACAAGTTAGTGACTGAGTTGAAGAGTGAGATTTTGTGTAAGCTAAATACTGTTTCCACTACAACCAAGTCCAGCTCTGAGACTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

175

Amino Acids

19.39

Weight (kDa)

5.23

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI31_Prot_N	PF11566	27 - 162	2.4e-23	PI31 proteasome regulator N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AatII	GACGTC	1 cut(s)	169
AcoI	YGGCCR	1 cut(s)	358
AcsI	RAATTY	3 cut(s)	239, 353, 433
AcuI	CTGAAG	1 cut(s)	360
AcyI	GRCGYC	1 cut(s)	166
AdeI	CACNNNGTG	1 cut(s)	210
AgsI	TTSAA	5 cut(s)	159, 227, 374, 430, 460
AhdI	GACNNNNNGTC	1 cut(s)	190
AluBI	AGCT	3 cut(s)	338, 481, 513
AluI	AGCT	3 cut(s)	338, 481, 513
Alw26I	GTCTC	1 cut(s)	512
AoxI	GGCC	1 cut(s)	358
ApoI	RAATTY	3 cut(s)	239, 353, 433
Asp700I	GAANNNNTTC	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	289
BalI	TGGCCA	1 cut(s)	360
BccI	CCATC	3 cut(s)	49, 338, 369
BceAI	ACGGC	1 cut(s)	119
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	512
BmeRI	GACNNNNNGTC	1 cut(s)	190
BmsI	GCATC	1 cut(s)	319
BplI	GAGNNNNNCTC	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	166
BsaWI	WCCGGW	2 cut(s)	161, 274
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 242, 272
Bse3DI	GCAATG	1 cut(s)	312
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	3 cut(s)	221, 444, 507
BseRI	GAGGAG	2 cut(s)	9, 263
BshFI	GGCC	1 cut(s)	360
BsiSI	CCGG	3 cut(s)	162, 275, 399
BsmAI	GTCTC	1 cut(s)	512
BsnI	GGCC	1 cut(s)	360
Bsp143I	GATC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	3 cut(s)	220, 445, 508
BsrDI	GCAATG	1 cut(s)	312
BssMI	GATC	1 cut(s)	63
BssNI	GRCGYC	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	490
Bst6I	CTCTTC	2 cut(s)	275, 455
BstACI	GRCGYC	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	3 cut(s)	207, 453, 516
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 185, 408
BsuRI	GGCC	1 cut(s)	360
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	57, 215
Cac8I	GCNNGC	1 cut(s)	81
CseI	GACGC	1 cut(s)	194
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	5 cut(s)	134, 338, 360, 481, 513
CviKI_1	RGCY	5 cut(s)	134, 338, 360, 481, 513
DdeI	CTNAG	3 cut(s)	207, 453, 516
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
DraIII	CACNNNGTG	1 cut(s)	210
DriI	GACNNNNNGTC	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	358
Eam1104I	CTCTTC	2 cut(s)	275, 455
Eam1105I	GACNNNNNGTC	1 cut(s)	190
EarI	CTCTTC	2 cut(s)	275, 455
Eco32I	GATATC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	360
EcoRI	GAATTC	1 cut(s)	239
EcoRV	GATATC	1 cut(s)	287
FaeI	CATG	1 cut(s)	50
FaiI	YATR	5 cut(s)	48, 77, 255, 267, 387
FatI	CATG	1 cut(s)	46
FbaI	TGATCA	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	360
HapII	CCGG	3 cut(s)	162, 275, 399
HgaI	GACGC	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	1 cut(s)	50
HinfI	GANTC	2 cut(s)	29, 395
HpaII	CCGG	3 cut(s)	162, 275, 399
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	1 cut(s)	517
Hpy188III	TCNNGA	1 cut(s)	430
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	2 cut(s)	188, 248
HpyAV	CCTTC	3 cut(s)	184, 221, 401
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	2 cut(s)	50, 332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 185, 408
HpyF3I	CTNAG	3 cut(s)	207, 453, 516
HpySE526I	ACGT	1 cut(s)	166
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	63
LpnPI	CCDG	8 cut(s)	52, 93, 175, 183, 275, 288, 412, 523
LweI	GCATC	1 cut(s)	319
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	3 cut(s)	292, 353, 472
MlsI	TGGCCA	1 cut(s)	360
MluCI	AATT	6 cut(s)	239, 353, 369, 382, 425, 433
MluNI	TGGCCA	1 cut(s)	360
MnlI	CCTC	4 cut(s)	30, 205, 241, 397
Mox20I	TGGCCA	1 cut(s)	360
MroXI	GAANNNNTTC	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	360
MseI	TTAA	1 cut(s)	294
Msp20I	TGGCCA	1 cut(s)	360
MspI	CCGG	3 cut(s)	162, 275, 399
MwoI	GCNNNNNNNGC	3 cut(s)	131, 185, 408
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	448
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	29, 395
PsiI	TTATAA	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	294
Sau3AI	GATC	1 cut(s)	63
SetI	ASST	5 cut(s)	71, 169, 340, 483, 515
SfaNI	GCATC	1 cut(s)	319
Sse9I	AATT	6 cut(s)	239, 353, 369, 382, 425, 433
TaaI	ACNGT	1 cut(s)	490
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	2 cut(s)	200, 243
TasI	AATT	6 cut(s)	239, 353, 369, 382, 425, 433
TfiI	GAWTC	2 cut(s)	29, 395
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	2 cut(s)	57, 215
TseFI	GTSAC	1 cut(s)	448
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	4 cut(s)	17, 136, 323, 408
TspRI	CASTG	2 cut(s)	57, 215
XapI	RAATTY	3 cut(s)	239, 353, 433
XcmI	CCANNNNNNNNNTGG	2 cut(s)	211, 374
XmnI	GAANNNNTTC	1 cut(s)	239
ZraI	GACGTC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.