Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002316.1

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Reverse (-)

392735 .. 393070

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002316.1_g000083.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

atgaaggttctagtgaagtgtcttgtgattgatggaacattgagtgtagatgctttggctgatggggcttctcagaacgttcattgtgaatttaatgttggtgattatgtgcaagaaaatgagggaagtaattactcatcacagtttaagaacttggacaccctagtgaagaatctcaaccctcaagttttgttgaaattggaggagtcttccacacccaaggcaacaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

77

Amino Acids

8.43

Weight (kDa)

4.87

Isoelectric Point (pI)

17.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	81, 113
AleI	CACNNNNGTG	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	201
BccI	CCATC	2 cut(s)	26, 56
BfaI	CTAG	2 cut(s)	11, 164
BmsI	GCATC	1 cut(s)	40
BpiI	GAAGAC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	86
BseRI	GAGGAG	1 cut(s)	218
BspCNI	CTCAG	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstV2I	GAAGAC	1 cut(s)	201
CviJI	RGCY	2 cut(s)	59, 68
CviKI_1	RGCY	2 cut(s)	59, 68
DdeI	CTNAG	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaiI	YATR	1 cut(s)	108
FspBI	CTAG	2 cut(s)	11, 164
HinfI	GANTC	2 cut(s)	172, 206
HphI	GGTGA	1 cut(s)	113
Hpy188I	TCNGA	1 cut(s)	75
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	1 cut(s)	112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	1 cut(s)	78
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	2 cut(s)	11, 164
MaeII	ACGT	1 cut(s)	78
MboII	GAAGA	2 cut(s)	181, 201
MluCI	AATT	3 cut(s)	89, 130, 197
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	3 cut(s)	115, 192, 196
MseI	TTAA	2 cut(s)	93, 147
MslI	CAYNNNNRTG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	65
OliI	CACNNNNGTG	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	172
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Psp1406I	AACGTT	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	93, 147
SchI	GAGTC	1 cut(s)	215
SetI	ASST	3 cut(s)	9, 81, 233
SfaNI	GCATC	1 cut(s)	40
SgeI	CNNG	6 cut(s)	23, 35, 125, 166, 176, 197
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
Sse9I	AATT	3 cut(s)	89, 130, 197
SspMI	CTAG	2 cut(s)	11, 164
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	1 cut(s)	81
TasI	AATT	3 cut(s)	89, 130, 197
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	2 cut(s)	93, 147
Tru9I	TTAA	2 cut(s)	93, 147
TspDTI	ATGAA	2 cut(s)	17, 71
XapI	RAATTY	1 cut(s)	89
XspI	CTAG	2 cut(s)	11, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.