Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004932.1

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Reverse (-)

3275 .. 4045

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004932.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggcgaacgaaaagtcggtgatggcggtgatcagagtggcgaggccatccttccgcaacaaaaacgacaaggtaggaaccgaccaatggaacgagctggaagaggagcacgcgttcctttacgccaacccagaaaacaagaagttggtgctggtcaagtgccttctcaaggcagtagttccgaaacggtccatctccaaatcaacgttgatgactgttggagagaataataataatggcagcagcaatttaaagaatttggagacattggtgaagagcctggacactcaggttctgtgtaaattagatacttgttcctcaagtaatagccacaaggcctcaagttcaataacaagtacaacaacggagcctggtggtactggaagaatctatctttcttggccgggtgctggaatgtacactgctagaggcgattatggagcaccacccccggctcctggtttttttgccgaccggttcgcgtggaatggttcagctttcatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

168

Amino Acids

18.28

Weight (kDa)

9.17

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	113, 482
AciI	CCGC	2 cut(s)	26, 55
AclI	AACGTT	1 cut(s)	206
AcoI	YGGCCR	1 cut(s)	401
AcsI	RAATTY	1 cut(s)	256
AfaI	GTAC	3 cut(s)	358, 379, 419
AfiI	CCNNNNNNNGG	4 cut(s)	87, 169, 410, 458
AflIII	ACRYGT	1 cut(s)	111
AgeI	ACCGGT	1 cut(s)	474
AgsI	TTSAA	1 cut(s)	348
AjnI	CCWGG	3 cut(s)	279, 370, 457
AloI	GAACNNNNNNTCC	2 cut(s)	98, 130
AluBI	AGCT	2 cut(s)	97, 497
AluI	AGCT	2 cut(s)	97, 497
Alw21I	GWGCWC	2 cut(s)	111, 445
Alw26I	GTCTC	1 cut(s)	257
AlwNI	CAGNNNCTG	1 cut(s)	295
AoxI	GGCC	3 cut(s)	44, 336, 401
ApeKI	GCWGC	2 cut(s)	240, 243
ApoI	RAATTY	1 cut(s)	256
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AsiGI	ACCGGT	1 cut(s)	474
AspS9I	GGNCC	1 cut(s)	189
AsuC2I	CCSGG	2 cut(s)	405, 452
AsuHPI	GGTGA	3 cut(s)	31, 40, 283
AvaII	GGWCC	1 cut(s)	189
Bbv12I	GWGCWC	2 cut(s)	111, 445
BbvI	GCAGC	2 cut(s)	252, 255
BccI	CCATC	3 cut(s)	16, 55, 200
BciT130I	CCWGG	3 cut(s)	281, 372, 459
BclI	TGATCA	1 cut(s)	30
BcnI	CCSGG	2 cut(s)	405, 452
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	1 cut(s)	426
BisI	GCNGC	2 cut(s)	241, 244
BlsI	GCNGC	2 cut(s)	242, 245
Bme1390I	CCNGG	5 cut(s)	281, 372, 405, 452, 459
Bme18I	GGWCC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	189
BmiI	GGNNCC	3 cut(s)	79, 369, 456
BmrFI	CCNGG	5 cut(s)	281, 372, 405, 452, 459
BpuEI	CTTGAG	3 cut(s)	152, 304, 325
BpuMI	CCSGG	2 cut(s)	405, 452
BsaJI	CCNNGG	1 cut(s)	450
BsaWI	WCCGGW	1 cut(s)	474
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 169, 410, 458
Bse118I	RCCGGY	1 cut(s)	474
Bse1I	ACTGG	1 cut(s)	385
BseBI	CCWGG	3 cut(s)	281, 372, 459
BseDI	CCNNGG	1 cut(s)	450
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	4 cut(s)	87, 169, 410, 458
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	252, 255
Bsh1236I	CGCG	2 cut(s)	113, 482
Bsh1285I	CGRYCG	1 cut(s)	475
BshFI	GGCC	3 cut(s)	46, 338, 403
BshTI	ACCGGT	1 cut(s)	474
BsiEI	CGRYCG	1 cut(s)	475
BsiHKAI	GWGCWC	2 cut(s)	111, 445
BsiSI	CCGG	3 cut(s)	404, 452, 475
BslI	CCNNNNNNNGG	4 cut(s)	87, 169, 410, 458
BsmAI	GTCTC	1 cut(s)	257
BsnI	GGCC	3 cut(s)	46, 338, 403
Bsp1286I	GDGCHC	2 cut(s)	111, 445
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	2 cut(s)	26, 55
BspANI	GGCC	3 cut(s)	46, 338, 403
BspCNI	CTCAG	1 cut(s)	301
BspFNI	CGCG	2 cut(s)	113, 482
BspLI	GGNNCC	3 cut(s)	79, 369, 456
BspQI	GCTCTTC	1 cut(s)	269
BsrFI	RCCGGY	1 cut(s)	474
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	385
BssAI	RCCGGY	1 cut(s)	474
BssECI	CCNNGG	1 cut(s)	450
BssMI	GATC	1 cut(s)	30
Bst2UI	CCWGG	3 cut(s)	281, 372, 459
Bst4CI	ACNGT	2 cut(s)	189, 217
Bst6I	CTCTTC	2 cut(s)	96, 269
BstAUI	TGTACA	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	1 cut(s)	288
BstENI	CCTNNNNNAGG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	47
BstFNI	CGCG	2 cut(s)	113, 482
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	1 cut(s)	30
BstMCI	CGRYCG	1 cut(s)	475
BstNI	CCWGG	3 cut(s)	281, 372, 459
BstSCI	CCNGG	5 cut(s)	279, 370, 403, 450, 457
BstUI	CGCG	2 cut(s)	113, 482
BstV1I	GCAGC	2 cut(s)	252, 255
BsuRI	GGCC	3 cut(s)	46, 338, 403
BtsCI	GGATG	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	1 cut(s)	420
Cac8I	GCNNGC	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	474
Cfr13I	GGNCC	1 cut(s)	189
Csp6I	GTAC	3 cut(s)	357, 378, 418
CspAI	ACCGGT	1 cut(s)	474
CviAII	CATG	1 cut(s)	502
CviJI	RGCY	9 cut(s)	46, 97, 279, 330, 338, 370, 403, 455, 497
CviKI_1	RGCY	9 cut(s)	46, 97, 279, 330, 338, 370, 403, 455, 497
CviQI	GTAC	3 cut(s)	357, 378, 418
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
DraI	TTTAAA	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	401
Eam1104I	CTCTTC	2 cut(s)	96, 269
EarI	CTCTTC	2 cut(s)	96, 269
Eco147I	AGGCCT	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	189
EcoNI	CCTNNNNNAGG	1 cut(s)	167
EcoRII	CCWGG	3 cut(s)	279, 370, 457
FaeI	CATG	1 cut(s)	505
FaiI	YATR	2 cut(s)	438, 503
FatI	CATG	1 cut(s)	501
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	241, 244
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	2 cut(s)	241, 244
FspBI	CTAG	1 cut(s)	426
GluI	GCNGC	2 cut(s)	241, 244
HaeIII	GGCC	3 cut(s)	46, 338, 403
HapII	CCGG	3 cut(s)	404, 452, 475
Hin1II	CATG	1 cut(s)	505
HinfI	GANTC	1 cut(s)	387
HpaII	CCGG	3 cut(s)	404, 452, 475
HphI	GGTGA	3 cut(s)	31, 40, 283
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	2 cut(s)	35, 183
Hpy8I	GTNNAC	1 cut(s)	420
HpyAV	CCTTC	2 cut(s)	61, 173
HpyCH4III	ACNGT	2 cut(s)	189, 217
HpyCH4IV	ACGT	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	1 cut(s)	206
Hsp92II	CATG	1 cut(s)	505
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	30
LguI	GCTCTTC	1 cut(s)	269
LmnI	GCTCC	4 cut(s)	106, 367, 440, 460
Lsp1109I	GCAGC	2 cut(s)	252, 255
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	1 cut(s)	206
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	3 cut(s)	113, 286, 396
MhlI	GDGCHC	2 cut(s)	111, 445
MluCI	AATT	3 cut(s)	247, 256, 302
MluI	ACGCGT	1 cut(s)	111
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	5 cut(s)	36, 97, 328, 349, 422
MseI	TTAA	1 cut(s)	251
MspI	CCGG	3 cut(s)	404, 452, 475
MspR9I	CCNGG	5 cut(s)	281, 372, 405, 452, 459
MvaI	CCWGG	3 cut(s)	281, 372, 459
MvnI	CGCG	2 cut(s)	113, 482
NciI	CCSGG	2 cut(s)	405, 452
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	505
NlaIV	GGNNCC	3 cut(s)	79, 369, 456
PceI	AGGCCT	1 cut(s)	338
PciSI	GCTCTTC	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	387
PinAI	ACCGGT	1 cut(s)	474
PkrI	GCNGC	2 cut(s)	242, 245
Psp1406I	AACGTT	1 cut(s)	206
Psp6I	CCWGG	3 cut(s)	279, 370, 457
PspGI	CCWGG	3 cut(s)	279, 370, 457
PspN4I	GGNNCC	3 cut(s)	79, 369, 456
PspPI	GGNCC	1 cut(s)	189
PstNI	CAGNNNCTG	1 cut(s)	295
RsaI	GTAC	3 cut(s)	358, 379, 419
RsaNI	GTAC	3 cut(s)	357, 378, 418
SapI	GCTCTTC	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	2 cut(s)	241, 244
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	1 cut(s)	189
ScrFI	CCNGG	5 cut(s)	281, 372, 405, 452, 459
SduI	GDGCHC	2 cut(s)	111, 445
SetI	ASST	5 cut(s)	75, 99, 209, 294, 499
SinI	GGWCC	1 cut(s)	189
SmlI	CTYRAG	3 cut(s)	167, 319, 340
SmoI	CTYRAG	3 cut(s)	167, 319, 340
Sse9I	AATT	3 cut(s)	247, 256, 302
SseBI	AGGCCT	1 cut(s)	338
SsiI	CCGC	2 cut(s)	26, 55
SspMI	CTAG	1 cut(s)	426
StuI	AGGCCT	1 cut(s)	338
StyD4I	CCNGG	5 cut(s)	279, 370, 403, 450, 457
TaaI	ACNGT	2 cut(s)	189, 217
TaiI	ACGT	1 cut(s)	209
TasI	AATT	3 cut(s)	247, 256, 302
TatI	WGTACW	2 cut(s)	356, 417
TfiI	GAWTC	1 cut(s)	387
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TscAI	CASTG	1 cut(s)	427
TseI	GCWGC	2 cut(s)	240, 243
TspDTI	ATGAA	1 cut(s)	490
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	189
XagI	CCTNNNNNAGG	1 cut(s)	167
XapI	RAATTY	1 cut(s)	256
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.