Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Reverse (-)

11700148 .. 11703226

Gene Structure 3079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG137500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCGAACGACAAGTCGGTCATGGCGGTCATCCGAGCCGCACGCCCATCTTTCCGCAACGAAAACGACAAGGTCGCCTTTGCCGTTCACGCTTCCTTCGCCGCCTCCGGCTACGAGTTAATCGCCGCCGGCCGCCCTGCTTTTTCCGAAAACGCCCTCTCCTCTTCCGCAACTGAGGAAGTGGGTATTGAGAAATGGAACGAGCTGGAGAACGAGTACGCGTTCGTGTATTTGAACCGGGAAAAGGGTTCGAAGAAGGTTCTGGTGAAGTGTCTTGTGATTGATGGAACATTGAGTGTAGATGCTCTGGCTGATGGGGCTTCTCAGAACCTTCACTGTGAATTTGATGTTGGTGATTATGTGCAAGAAAATGAGGGCAGTAATTACTCATCACAGTTTAAGAACTTGGACACCCTAGTGAAGAATCTCAACGCTCAAGTTTTGTCGAAATTGGAGGAGTCTTCCACACCCAAGCCAACAAGGGAAACTGGCAGTTCAGACTTGACTAATATATCAGCAAATGAGCCTGGGCGTGGTGCTGGATCTCCAGGAGTTGGATATCGACCTGGGCCTGGTGCTGGAAGGTATCCAGGTGGTGGTGATGATCTTTATCCTGGGGCTGGCGCTGGAATGTATCCTAGGTATCCAGTGGGTGGTAGCGATCTTTATCCTGGACCTGGTGCTGGAATGCCTTCTAGGGGTGCTTTTGACGATGGAAGCATGTTTGTTGGACCCAATGATCGTAGATTTGGGGACGTTGGACAACCTGGGTTTCCGGGGTTTCCTGGAGGACTACCGGGTATTCGTGATCCTCGGTTTGGTGCTGAAAGACCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

279

Amino Acids

29.41

Weight (kDa)

4.92

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI31_Prot_N	PF11566	15 - 155	3.5e-24	PI31 proteasome regulator N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
AccB7I	CCANNNNNTGG	3 cut(s)	554, 596, 653
AccII	CGCG	1 cut(s)	221
AciI	CCGC	7 cut(s)	26, 39, 55, 102, 126, 133, 168
AclWI	GGATC	2 cut(s)	550, 803
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	341
AfaI	GTAC	1 cut(s)	218
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	1 cut(s)	235
AjuI	GAANNNNNNNTTGG	2 cut(s)	333, 365
AleI	CACNNNNGTG	1 cut(s)	416
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
AlwI	GGATC	2 cut(s)	550, 803
AoxI	GGCC	2 cut(s)	130, 569
ApoI	RAATTY	1 cut(s)	341
ArsI	GACNNNNNNTTYG	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	691
AspA2I	CCTAGG	1 cut(s)	638
AspLEI	GCGC	1 cut(s)	626
AspS9I	GGNCC	3 cut(s)	569, 674, 731
AsuC2I	CCSGG	3 cut(s)	239, 777, 798
AsuHPI	GGTGA	3 cut(s)	277, 365, 611
AsuII	TTCGAA	1 cut(s)	251
AvaII	GGWCC	2 cut(s)	674, 731
AvrII	CCTAGG	1 cut(s)	638
BbsI	GAAGAC	1 cut(s)	453
BccI	CCATC	4 cut(s)	55, 278, 308, 707
BceAI	ACGGC	1 cut(s)	68
BciVI	GTATCC	3 cut(s)	597, 645, 654
BcnI	CCSGG	3 cut(s)	239, 777, 798
BfaI	CTAG	3 cut(s)	416, 639, 696
BfoI	RGCGCY	1 cut(s)	627
BfuI	GTATCC	3 cut(s)	597, 645, 654
BisI	GCNGC	4 cut(s)	39, 102, 126, 133
BlnI	CCTAGG	1 cut(s)	638
BlsI	GCNGC	4 cut(s)	40, 103, 127, 134
Bme18I	GGWCC	2 cut(s)	674, 731
BmgT120I	GGNCC	3 cut(s)	569, 674, 731
BmiI	GGNNCC	1 cut(s)	733
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	453
BpmI	CTGGAG	3 cut(s)	227, 531, 807
Bpu14I	TTCGAA	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	420
BpuMI	CCSGG	3 cut(s)	239, 777, 798
BsaBI	GATNNNNATC	2 cut(s)	609, 666
BsaJI	CCNNGG	7 cut(s)	527, 566, 614, 638, 767, 776, 812
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 200, 230
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	2 cut(s)	493, 647
Bse8I	GATNNNNATC	2 cut(s)	609, 666
BseDI	CCNNGG	7 cut(s)	527, 566, 614, 638, 767, 776, 812
BseGI	GGATG	1 cut(s)	30
BseJI	GATNNNNATC	2 cut(s)	609, 666
BseMII	CTCAG	2 cut(s)	165, 338
BseNI	ACTGG	2 cut(s)	493, 647
BseRI	GAGGAG	2 cut(s)	151, 470
BseX3I	CGGCCG	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	2 cut(s)	132, 571
BsiEI	CGRYCG	1 cut(s)	133
BsiSI	CCGG	5 cut(s)	108, 129, 238, 776, 797
BslFI	GGGAC	1 cut(s)	767
BsmFI	GGGAC	1 cut(s)	767
BsmI	GAATGC	1 cut(s)	693
BsnI	GGCC	2 cut(s)	132, 571
Bsp119I	TTCGAA	1 cut(s)	251
Bsp143I	GATC	5 cut(s)	542, 604, 661, 739, 808
BspACI	CCGC	7 cut(s)	26, 39, 55, 102, 126, 133, 168
BspANI	GGCC	2 cut(s)	132, 571
BspCNI	CTCAG	2 cut(s)	166, 337
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	733
BspPI	GGATC	2 cut(s)	550, 803
BspT104I	TTCGAA	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	493, 647
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	7 cut(s)	527, 566, 614, 638, 767, 776, 812
BssMI	GATC	5 cut(s)	542, 604, 661, 739, 808
BssT1I	CCWWGG	1 cut(s)	638
Bst4CI	ACNGT	2 cut(s)	338, 396
Bst6I	CTCTTC	1 cut(s)	169
BstBI	TTCGAA	1 cut(s)	251
BstC8I	GCNNGC	3 cut(s)	43, 130, 622
BstDEI	CTNAG	2 cut(s)	174, 324
BstF5I	GGATG	1 cut(s)	30
BstFNI	CGCG	1 cut(s)	221
BstH2I	RGCGCY	1 cut(s)	627
BstHHI	GCGC	1 cut(s)	626
BstKTI	GATC	5 cut(s)	545, 607, 664, 742, 811
BstMBI	GATC	5 cut(s)	542, 604, 661, 739, 808
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 98, 317
BstNSI	RCATGY	1 cut(s)	724
BstUI	CGCG	1 cut(s)	221
BstV2I	GAAGAC	1 cut(s)	453
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
BstZI	CGGCCG	1 cut(s)	130
BsuI	GTATCC	3 cut(s)	597, 645, 654
BsuRI	GGCC	2 cut(s)	132, 571
BtsCI	GGATG	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	334, 654
Cac8I	GCNNGC	3 cut(s)	43, 130, 622
CfoI	GCGC	1 cut(s)	626
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	3 cut(s)	569, 674, 731
CsiI	ACCWGGT	1 cut(s)	676
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	2 cut(s)	22, 721
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	174, 324
DpnI	GATC	5 cut(s)	544, 606, 663, 741, 810
DpnII	GATC	5 cut(s)	542, 604, 661, 739, 808
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	130
EagI	CGGCCG	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
EclXI	CGGCCG	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	638
Eco32I	GATATC	1 cut(s)	560
Eco47I	GGWCC	2 cut(s)	674, 731
Eco52I	CGGCCG	1 cut(s)	130
EcoRV	GATATC	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	638
ErhI	CCWWGG	1 cut(s)	638
FaeI	CATG	2 cut(s)	25, 724
FaiI	YATR	4 cut(s)	23, 360, 512, 722
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	767
FatI	CATG	2 cut(s)	21, 720
Fnu4HI	GCNGC	4 cut(s)	39, 102, 126, 133
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	4 cut(s)	39, 102, 126, 133
FspBI	CTAG	3 cut(s)	416, 639, 696
GlaI	GCGC	1 cut(s)	625
GluI	GCNGC	4 cut(s)	39, 102, 126, 133
GsuI	CTGGAG	3 cut(s)	227, 531, 807
HaeII	RGCGCY	1 cut(s)	627
HaeIII	GGCC	2 cut(s)	132, 571
HapII	CCGG	5 cut(s)	108, 129, 238, 776, 797
HhaI	GCGC	1 cut(s)	626
Hin1II	CATG	2 cut(s)	25, 724
Hin6I	GCGC	1 cut(s)	624
HinP1I	GCGC	1 cut(s)	624
HinfI	GANTC	2 cut(s)	424, 458
HpaII	CCGG	5 cut(s)	108, 129, 238, 776, 797
HphI	GGTGA	3 cut(s)	277, 365, 611
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	4 cut(s)	35, 148, 327, 499
Hpy188III	TCNNGA	1 cut(s)	806
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	5 cut(s)	106, 250, 341, 576, 702
HpyCH4III	ACNGT	2 cut(s)	338, 396
HpyCH4IV	ACGT	1 cut(s)	756
HpyCH4V	TGCA	1 cut(s)	364
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 98, 317
HpyF3I	CTNAG	2 cut(s)	174, 324
HpySE526I	ACGT	1 cut(s)	756
Hsp92II	CATG	2 cut(s)	25, 724
HspAI	GCGC	1 cut(s)	624
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
Kzo9I	GATC	5 cut(s)	542, 604, 661, 739, 808
LweI	GCATC	1 cut(s)	292
MabI	ACCWGGT	1 cut(s)	676
MaeI	CTAG	3 cut(s)	416, 639, 696
MaeII	ACGT	1 cut(s)	756
MalI	GATC	5 cut(s)	544, 606, 663, 741, 810
MboI	GATC	5 cut(s)	542, 604, 661, 739, 808
MboII	GAAGA	4 cut(s)	156, 265, 433, 453
MflI	RGATCY	1 cut(s)	542
MluCI	AATT	3 cut(s)	341, 382, 449
MluI	ACGCGT	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	467
MmeI	TCCRAC	3 cut(s)	535, 709, 739
MnlI	CCTC	8 cut(s)	115, 167, 169, 172, 367, 448, 782, 822
MroNI	GCCGGC	1 cut(s)	128
MroXI	GAANNNNTTC	1 cut(s)	691
MseI	TTAA	2 cut(s)	119, 399
MslI	CAYNNNNRTG	1 cut(s)	416
MspI	CCGG	5 cut(s)	108, 129, 238, 776, 797
Mva1269I	GAATGC	1 cut(s)	693
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	3 cut(s)	89, 98, 317
NaeI	GCCGGC	1 cut(s)	130
NciI	CCSGG	3 cut(s)	239, 777, 798
NdeII	GATC	5 cut(s)	542, 604, 661, 739, 808
NgoMIV	GCCGGC	1 cut(s)	128
NlaIII	CATG	2 cut(s)	25, 724
NlaIV	GGNNCC	1 cut(s)	733
NspI	RCATGY	1 cut(s)	724
NspV	TTCGAA	1 cut(s)	251
OliI	CACNNNNGTG	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	1 cut(s)	693
PdiI	GCCGGC	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	691
PfeI	GAWTC	1 cut(s)	424
PflFI	GACNNNGTC	1 cut(s)	71
PflMI	CCANNNNNTGG	3 cut(s)	554, 596, 653
PfoI	TCCNGGA	3 cut(s)	547, 670, 784
PkrI	GCNGC	4 cut(s)	40, 103, 127, 134
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
PspN4I	GGNNCC	1 cut(s)	733
PspPI	GGNCC	3 cut(s)	569, 674, 731
PsuI	RGATCY	1 cut(s)	542
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	416
SaqAI	TTAA	2 cut(s)	119, 399
SatI	GCNGC	4 cut(s)	39, 102, 126, 133
Sau3AI	GATC	5 cut(s)	542, 604, 661, 739, 808
Sau96I	GGNCC	3 cut(s)	569, 674, 731
SchI	GAGTC	1 cut(s)	467
SexAI	ACCWGGT	1 cut(s)	676
SfaNI	GCATC	1 cut(s)	292
SfuI	TTCGAA	1 cut(s)	251
SinI	GGWCC	2 cut(s)	674, 731
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
Sse9I	AATT	3 cut(s)	341, 382, 449
SsiI	CCGC	7 cut(s)	26, 39, 55, 102, 126, 133, 168
SspMI	CTAG	3 cut(s)	416, 639, 696
StyI	CCWWGG	1 cut(s)	638
TaaI	ACNGT	2 cut(s)	338, 396
TaiI	ACGT	1 cut(s)	759
TaqI	TCGA	3 cut(s)	251, 446, 562
TaqII	GACCGA	1 cut(s)	7
TasI	AATT	3 cut(s)	341, 382, 449
TauI	GCSGC	4 cut(s)	41, 104, 128, 135
TfiI	GAWTC	1 cut(s)	424
Tru1I	TTAA	2 cut(s)	119, 399
Tru9I	TTAA	2 cut(s)	119, 399
TscAI	CASTG	2 cut(s)	341, 654
TspRI	CASTG	2 cut(s)	341, 654
Tth111I	GACNNNGTC	1 cut(s)	71
Van91I	CCANNNNNTGG	3 cut(s)	554, 596, 653
VpaK11BI	GGWCC	2 cut(s)	674, 731
XapI	RAATTY	1 cut(s)	341
XceI	RCATGY	1 cut(s)	724
XmaJI	CCTAGG	1 cut(s)	638
XmnI	GAANNNNTTC	1 cut(s)	691
XspI	CTAG	3 cut(s)	416, 639, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.