Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Reverse (-)

36309539 .. 36312480

Gene Structure 2942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008752

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCGAACGAAAAGTCGGTGATGGCGGTGATCAGAGCGGCGAGGCCAACCTTCCGCAACAATAACGACAAGGTTGCTTTTGCGGTTCACGCCTCTTTCGTAGCCTCCGGGTACGAGCTCATCGCCGCCGGCCCTCCTGCTTTTTCCGATTCTGCCCTCCTCTCCTCCTCCTCAACCGATGAAGTAGGAATCGATGGATGGAACGAGCTTGACGAGGAGTACGCTTTCGTCTACGCCAACGCCGACGCCGAAAACAAGAACAAGTTACTGGTCAAATGTCTTGTGATGAACGATAAATTGTTCGTGGATGCTTTGGCTTCTCACTCTCTCCATCTCGAAATCAATTCTTCAAATAGTAACGTCGCCCCCGTAAGTTCAGAATCAAGTGAAAGATCAACAACTGAGCCCCGTACTCCACCTTCAGATCCTCTTCCTTCCAGAATTGTCTATCCTTCTGTTAATCCTATAGGTGATAGTGATCGTTTCCCTGGGCCTGGTGCTGGAATGTATCCTGCTAGAGGTGATTTTGGTGGTGGAGGCATGCTTCTAGGACCAAATGATCCTCGGTGGTTTGGCGGCATTAGAGAACCTGGGTTTCCTGGAGGACAACCGGGTGTTCCTCCTGGTGCTCGTTTTGACCCCTATGGGCCACCTGGTGTTCCTGGTTTTGAGCCCAATAGGTTTGCAAGGAATCCACGGAGACCAGGGGGTGGCACTCATCCAGACTTGGAACATTTTGGGAGTGGTTCTGATTTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

254

Amino Acids

26.81

Weight (kDa)

5.02

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI31_Prot_N	PF11566	15 - 110	3.7e-16	PI31 proteasome regulator N-terminal
PI31_Prot_C	PF08577	156 - 217	4.4e-06	PI31 proteasome regulator

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	710
AccBSI	CCGCTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	6 cut(s)	26, 38, 55, 83, 126, 576
AclWI	GGATC	2 cut(s)	419, 554
AcuI	CTGAAG	1 cut(s)	405
AcyI	GRCGYC	1 cut(s)	246
AdeI	CACNNNGTG	1 cut(s)	656
AfaI	GTAC	3 cut(s)	113, 221, 412
AfiI	CCNNNNNNNGG	4 cut(s)	494, 500, 518, 710
AgsI	TTSAA	1 cut(s)	351
AjnI	CCWGG	8 cut(s)	487, 493, 589, 598, 622, 652, 661, 703
AluBI	AGCT	2 cut(s)	118, 208
AluI	AGCT	2 cut(s)	118, 208
Alw21I	GWGCWC	2 cut(s)	120, 631
Alw26I	GTCTC	1 cut(s)	694
AlwI	GGATC	2 cut(s)	419, 554
AoxI	GGCC	4 cut(s)	44, 130, 491, 647
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AspS9I	GGNCC	4 cut(s)	131, 491, 551, 647
AsuC2I	CCSGG	2 cut(s)	109, 612
AsuHPI	GGTGA	4 cut(s)	31, 40, 482, 533
AvaII	GGWCC	1 cut(s)	551
BanII	GRGCYC	3 cut(s)	120, 408, 675
BarI	GAAGNNNNNNTAC	2 cut(s)	403, 435
Bbv12I	GWGCWC	2 cut(s)	120, 631
BccI	CCATC	4 cut(s)	16, 188, 192, 339
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	8 cut(s)	489, 495, 591, 600, 624, 654, 663, 705
BciVI	GTATCC	1 cut(s)	519
BclI	TGATCA	1 cut(s)	30
BcnI	CCSGG	2 cut(s)	109, 612
BcoDI	GTCTC	1 cut(s)	694
BfaI	CTAG	2 cut(s)	516, 548
BfmI	CTRYAG	1 cut(s)	465
BfuI	GTATCC	1 cut(s)	519
BisI	GCNGC	3 cut(s)	39, 126, 577
BlsI	GCNGC	3 cut(s)	40, 127, 578
Bme18I	GGWCC	1 cut(s)	551
BmgT120I	GGNCC	4 cut(s)	131, 491, 551, 647
BmsI	GCATC	1 cut(s)	298
BpmI	CTGGAG	1 cut(s)	621
BpuMI	CCSGG	2 cut(s)	109, 612
Bsa29I	ATCGAT	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	477
BsaHI	GRCGYC	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	694
BsaJI	CCNNGG	6 cut(s)	487, 488, 563, 590, 695, 704
Bsc4I	CCNNNNNNNGG	4 cut(s)	494, 500, 518, 710
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	8 cut(s)	489, 495, 591, 600, 624, 654, 663, 705
BseCI	ATCGAT	1 cut(s)	192
BseDI	CCNNGG	6 cut(s)	487, 488, 563, 590, 695, 704
BseGI	GGATG	3 cut(s)	203, 313, 718
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	4 cut(s)	494, 500, 518, 710
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	1 cut(s)	273
BseRI	GAGGAG	5 cut(s)	149, 154, 157, 160, 230
BshFI	GGCC	4 cut(s)	46, 132, 493, 649
BshVI	ATCGAT	1 cut(s)	192
BsiHKAI	GWGCWC	2 cut(s)	120, 631
BsiSI	CCGG	3 cut(s)	108, 129, 611
BslI	CCNNNNNNNGG	4 cut(s)	494, 500, 518, 710
BsmAI	GTCTC	1 cut(s)	694
BsnI	GGCC	4 cut(s)	46, 132, 493, 649
Bso31I	GGTCTC	1 cut(s)	694
Bsp1286I	GDGCHC	4 cut(s)	120, 408, 631, 675
Bsp143I	GATC	5 cut(s)	30, 392, 424, 478, 559
BspACI	CCGC	6 cut(s)	26, 38, 55, 83, 126, 576
BspANI	GGCC	4 cut(s)	46, 132, 493, 649
BspCNI	CTCAG	1 cut(s)	394
BspDI	ATCGAT	1 cut(s)	192
BspPI	GGATC	2 cut(s)	419, 554
BspTNI	GGTCTC	1 cut(s)	694
BsrBI	CCGCTC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	273
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	6 cut(s)	487, 488, 563, 590, 695, 704
BssMI	GATC	5 cut(s)	30, 392, 424, 478, 559
BssNI	GRCGYC	1 cut(s)	246
Bst2UI	CCWGG	8 cut(s)	489, 495, 591, 600, 624, 654, 663, 705
Bst6I	CTCTTC	1 cut(s)	435
BstACI	GRCGYC	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	130, 542
BstDEI	CTNAG	1 cut(s)	402
BstDSI	CCRYGG	1 cut(s)	695
BstENI	CCTNNNNNAGG	1 cut(s)	516
BstF5I	GGATG	3 cut(s)	203, 313, 718
BstKTI	GATC	5 cut(s)	33, 395, 427, 481, 562
BstMAI	GTCTC	1 cut(s)	694
BstMBI	GATC	5 cut(s)	30, 392, 424, 478, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	8 cut(s)	489, 495, 591, 600, 624, 654, 663, 705
BstNSI	RCATGY	1 cut(s)	544
BstSFI	CTRYAG	1 cut(s)	465
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
Bsu15I	ATCGAT	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	519
BsuRI	GGCC	4 cut(s)	46, 132, 493, 649
BsuTUI	ATCGAT	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	695
BtgZI	GCGATG	1 cut(s)	106
BtsCI	GGATG	3 cut(s)	203, 313, 718
Cac8I	GCNNGC	2 cut(s)	130, 542
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	4 cut(s)	131, 491, 551, 647
ClaI	ATCGAT	1 cut(s)	192
CseI	GACGC	1 cut(s)	254
CsiI	ACCWGGT	1 cut(s)	652
Csp6I	GTAC	3 cut(s)	112, 220, 411
CviAII	CATG	1 cut(s)	541
CviQI	GTAC	3 cut(s)	112, 220, 411
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	5 cut(s)	32, 394, 426, 480, 561
DpnII	GATC	5 cut(s)	30, 392, 424, 478, 559
DraIII	CACNNNGTG	1 cut(s)	656
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Ecl136II	GAGCTC	1 cut(s)	118
Eco24I	GRGCYC	3 cut(s)	120, 408, 675
Eco31I	GGTCTC	1 cut(s)	694
Eco47I	GGWCC	1 cut(s)	551
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	405
EcoICRI	GAGCTC	1 cut(s)	118
EcoNI	CCTNNNNNAGG	1 cut(s)	516
EcoRII	CCWGG	8 cut(s)	487, 493, 589, 598, 622, 652, 661, 703
EcoT38I	GRGCYC	3 cut(s)	120, 408, 675
FaeI	CATG	1 cut(s)	544
FaiI	YATR	3 cut(s)	467, 542, 645
FatI	CATG	1 cut(s)	540
FbaI	TGATCA	1 cut(s)	30
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	3 cut(s)	39, 126, 577
FokI	GGATG	3 cut(s)	210, 320, 705
FriOI	GRGCYC	3 cut(s)	120, 408, 675
Fsp4HI	GCNGC	3 cut(s)	39, 126, 577
FspBI	CTAG	2 cut(s)	516, 548
GluI	GCNGC	3 cut(s)	39, 126, 577
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	4 cut(s)	46, 132, 493, 649
HapII	CCGG	3 cut(s)	108, 129, 611
HgaI	GACGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	1 cut(s)	544
HinfI	GANTC	4 cut(s)	149, 189, 380, 691
HpaII	CCGG	3 cut(s)	108, 129, 611
HphI	GGTGA	4 cut(s)	31, 40, 482, 533
Hpy166II	GTNNAC	2 cut(s)	88, 232
Hpy188I	TCNGA	5 cut(s)	35, 148, 379, 424, 751
Hpy188III	TCNNGA	3 cut(s)	335, 438, 722
Hpy8I	GTNNAC	2 cut(s)	88, 232
Hpy99I	CGWCG	2 cut(s)	248, 365
HpyAV	CCTTC	4 cut(s)	61, 429, 444, 462
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	1 cut(s)	686
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	1 cut(s)	360
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	544
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	5 cut(s)	30, 392, 424, 478, 559
LweI	GCATC	1 cut(s)	298
MabI	ACCWGGT	1 cut(s)	652
MaeI	CTAG	2 cut(s)	516, 548
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	2 cut(s)	264, 356
MalI	GATC	5 cut(s)	32, 394, 426, 480, 561
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	5 cut(s)	30, 392, 424, 478, 559
MboII	GAAGA	2 cut(s)	339, 422
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	4 cut(s)	120, 408, 631, 675
MluCI	AATT	3 cut(s)	296, 343, 441
MroNI	GCCGGC	1 cut(s)	128
MseI	TTAA	1 cut(s)	459
MspI	CCGG	3 cut(s)	108, 129, 611
MvaI	CCWGG	8 cut(s)	489, 495, 591, 600, 624, 654, 663, 705
MwoI	GCNNNNNNNGC	1 cut(s)	89
NaeI	GCCGGC	1 cut(s)	130
NciI	CCSGG	2 cut(s)	109, 612
NdeII	GATC	5 cut(s)	30, 392, 424, 478, 559
NgoMIV	GCCGGC	1 cut(s)	128
NlaIII	CATG	1 cut(s)	544
NspI	RCATGY	1 cut(s)	544
PaeI	GCATGC	1 cut(s)	544
PasI	CCCWGGG	1 cut(s)	488
PcsI	WCGNNNNNNNCGW	5 cut(s)	96, 210, 240, 246, 366
PdiI	GCCGGC	1 cut(s)	130
PfeI	GAWTC	4 cut(s)	149, 189, 380, 691
PflMI	CCANNNNNTGG	1 cut(s)	710
PfoI	TCCNGGA	1 cut(s)	598
PkrI	GCNGC	3 cut(s)	40, 127, 578
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	8 cut(s)	487, 493, 589, 598, 622, 652, 661, 703
PspGI	CCWGG	8 cut(s)	487, 493, 589, 598, 622, 652, 661, 703
PspPI	GGNCC	4 cut(s)	131, 491, 551, 647
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	3 cut(s)	113, 221, 412
RsaNI	GTAC	3 cut(s)	112, 220, 411
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	3 cut(s)	39, 126, 577
Sau3AI	GATC	5 cut(s)	30, 392, 424, 478, 559
Sau96I	GGNCC	4 cut(s)	131, 491, 551, 647
SduI	GDGCHC	4 cut(s)	120, 408, 631, 675
SexAI	ACCWGGT	1 cut(s)	652
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	465
SinI	GGWCC	1 cut(s)	551
SphI	GCATGC	1 cut(s)	544
Sse9I	AATT	3 cut(s)	296, 343, 441
SsiI	CCGC	6 cut(s)	26, 38, 55, 83, 126, 576
SspMI	CTAG	2 cut(s)	516, 548
SstI	GAGCTC	1 cut(s)	120
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	2 cut(s)	192, 336
TasI	AATT	3 cut(s)	296, 343, 441
TauI	GCSGC	3 cut(s)	41, 128, 579
TfiI	GAWTC	4 cut(s)	149, 189, 380, 691
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TspDTI	ATGAA	3 cut(s)	195, 302, 745
TspGWI	ACGGA	1 cut(s)	712
Van91I	CCANNNNNTGG	1 cut(s)	710
VpaK11BI	GGWCC	1 cut(s)	551
XagI	CCTNNNNNAGG	1 cut(s)	516
XceI	RCATGY	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	2 cut(s)	516, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.