Proteasome
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 17 |
| AccB1I | GGYRCC | 1 cut(s) | 858 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 500, 542, 599 |
| AccII | CGCG | 2 cut(s) | 155, 221 |
| AccIII | TCCGGA | 1 cut(s) | 844 |
| AciI | CCGC | 7 cut(s) | 39, 55, 102, 126, 133, 168, 821 |
| AclI | AACGTT | 1 cut(s) | 276 |
| AclWI | GGATC | 6 cut(s) | 496, 749, 803, 836, 877, 890 |
| AcoI | YGGCCR | 2 cut(s) | 24, 130 |
| AcsI | RAATTY | 1 cut(s) | 287 |
| AcyI | GRCGYC | 1 cut(s) | 859 |
| AfaI | GTAC | 1 cut(s) | 218 |
| AflIII | ACRYGT | 1 cut(s) | 219 |
| AgsI | TTSAA | 1 cut(s) | 235 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 279, 311 |
| AleI | CACNNNNGTG | 1 cut(s) | 362 |
| AluBI | AGCT | 1 cut(s) | 205 |
| AluI | AGCT | 1 cut(s) | 205 |
| Alw21I | GWGCWC | 1 cut(s) | 802 |
| AlwI | GGATC | 6 cut(s) | 496, 749, 803, 836, 877, 890 |
| Ama87I | CYCGRG | 1 cut(s) | 905 |
| Aor13HI | TCCGGA | 1 cut(s) | 844 |
| AoxI | GGCC | 5 cut(s) | 24, 130, 515, 818, 869 |
| ApoI | RAATTY | 1 cut(s) | 287 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 31 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 637 |
| AspA2I | CCTAGG | 1 cut(s) | 584 |
| AspLEI | GCGC | 3 cut(s) | 157, 572, 861 |
| AspS9I | GGNCC | 5 cut(s) | 515, 620, 677, 818, 869 |
| AsuC2I | CCSGG | 5 cut(s) | 239, 723, 744, 906, 907 |
| AsuHPI | GGTGA | 2 cut(s) | 311, 557 |
| AvaI | CYCGRG | 1 cut(s) | 905 |
| AvaII | GGWCC | 2 cut(s) | 620, 677 |
| AvrII | CCTAGG | 1 cut(s) | 584 |
| BamHI | GGATCC | 1 cut(s) | 882 |
| BanI | GGYRCC | 1 cut(s) | 858 |
| BbsI | GAAGAC | 1 cut(s) | 399 |
| Bbv12I | GWGCWC | 1 cut(s) | 802 |
| BccI | CCATC | 4 cut(s) | 55, 254, 653, 776 |
| BceAI | ACGGC | 2 cut(s) | 11, 68 |
| BciVI | GTATCC | 3 cut(s) | 543, 591, 600 |
| BcnI | CCSGG | 5 cut(s) | 239, 723, 744, 906, 907 |
| BfaI | CTAG | 4 cut(s) | 362, 585, 642, 928 |
| BfoI | RGCGCY | 2 cut(s) | 573, 862 |
| BfuI | GTATCC | 3 cut(s) | 543, 591, 600 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 826 |
| BisI | GCNGC | 5 cut(s) | 39, 102, 126, 133, 821 |
| BlnI | CCTAGG | 1 cut(s) | 584 |
| BlsI | GCNGC | 5 cut(s) | 40, 103, 127, 134, 822 |
| Bme18I | GGWCC | 2 cut(s) | 620, 677 |
| BmeT110I | CYCGRG | 1 cut(s) | 905 |
| BmgT120I | GGNCC | 5 cut(s) | 515, 620, 677, 818, 869 |
| BmiI | GGNNCC | 4 cut(s) | 679, 860, 870, 884 |
| BmsI | GCATC | 1 cut(s) | 238 |
| BpiI | GAAGAC | 1 cut(s) | 399 |
| BpmI | CTGGAG | 4 cut(s) | 227, 477, 753, 777 |
| BpuEI | CTTGAG | 1 cut(s) | 366 |
| BpuMI | CCSGG | 5 cut(s) | 239, 723, 744, 906, 907 |
| BsaBI | GATNNNNATC | 3 cut(s) | 555, 612, 840 |
| BsaHI | GRCGYC | 1 cut(s) | 859 |
| BsaJI | CCNNGG | 9 cut(s) | 473, 512, 560, 584, 713, 722, 758, 824, 905 |
| BsaWI | WCCGGW | 1 cut(s) | 844 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 143, 173, 200, 230 |
| Bse118I | RCCGGY | 1 cut(s) | 128 |
| Bse1I | ACTGG | 2 cut(s) | 439, 593 |
| Bse8I | GATNNNNATC | 3 cut(s) | 555, 612, 840 |
| BseAI | TCCGGA | 1 cut(s) | 844 |
| BseDI | CCNNGG | 9 cut(s) | 473, 512, 560, 584, 713, 722, 758, 824, 905 |
| BseGI | GGATG | 2 cut(s) | 30, 253 |
| BseJI | GATNNNNATC | 3 cut(s) | 555, 612, 840 |
| BseMII | CTCAG | 2 cut(s) | 165, 284 |
| BseNI | ACTGG | 2 cut(s) | 439, 593 |
| BseRI | GAGGAG | 2 cut(s) | 151, 416 |
| BseX3I | CGGCCG | 1 cut(s) | 130 |
| Bsh1236I | CGCG | 2 cut(s) | 155, 221 |
| Bsh1285I | CGRYCG | 1 cut(s) | 133 |
| BshFI | GGCC | 5 cut(s) | 26, 132, 517, 820, 871 |
| BshNI | GGYRCC | 1 cut(s) | 858 |
| BsiEI | CGRYCG | 1 cut(s) | 133 |
| BsiHKAI | GWGCWC | 1 cut(s) | 802 |
| BsiHKCI | CYCGRG | 1 cut(s) | 905 |
| BsiSI | CCGG | 7 cut(s) | 108, 129, 238, 722, 743, 845, 906 |
| BslFI | GGGAC | 1 cut(s) | 713 |
| BsmFI | GGGAC | 1 cut(s) | 713 |
| BsmI | GAATGC | 1 cut(s) | 639 |
| BsnI | GGCC | 5 cut(s) | 26, 132, 517, 820, 871 |
| BsoBI | CYCGRG | 1 cut(s) | 905 |
| Bsp1286I | GDGCHC | 1 cut(s) | 802 |
| Bsp13I | TCCGGA | 1 cut(s) | 844 |
| Bsp143I | GATC | 8 cut(s) | 488, 550, 607, 685, 754, 808, 841, 882 |
| BspACI | CCGC | 7 cut(s) | 39, 55, 102, 126, 133, 168, 821 |
| BspANI | GGCC | 5 cut(s) | 26, 132, 517, 820, 871 |
| BspCNI | CTCAG | 2 cut(s) | 166, 283 |
| BspEI | TCCGGA | 1 cut(s) | 844 |
| BspFNI | CGCG | 2 cut(s) | 155, 221 |
| BspLI | GGNNCC | 4 cut(s) | 679, 860, 870, 884 |
| BspPI | GGATC | 6 cut(s) | 496, 749, 803, 836, 877, 890 |
| BspT107I | GGYRCC | 1 cut(s) | 858 |
| BsrFI | RCCGGY | 1 cut(s) | 128 |
| BsrI | ACTGG | 2 cut(s) | 439, 593 |
| BssAI | RCCGGY | 1 cut(s) | 128 |
| BssECI | CCNNGG | 9 cut(s) | 473, 512, 560, 584, 713, 722, 758, 824, 905 |
| BssMI | GATC | 8 cut(s) | 488, 550, 607, 685, 754, 808, 841, 882 |
| BssNI | GRCGYC | 1 cut(s) | 859 |
| BssT1I | CCWWGG | 1 cut(s) | 584 |
| Bst4CI | ACNGT | 2 cut(s) | 284, 342 |
| Bst6I | CTCTTC | 1 cut(s) | 169 |
| BstACI | GRCGYC | 1 cut(s) | 859 |
| BstC8I | GCNNGC | 4 cut(s) | 43, 130, 568, 802 |
| BstDEI | CTNAG | 2 cut(s) | 174, 270 |
| BstF5I | GGATG | 2 cut(s) | 30, 253 |
| BstFNI | CGCG | 2 cut(s) | 155, 221 |
| BstH2I | RGCGCY | 2 cut(s) | 573, 862 |
| BstHHI | GCGC | 3 cut(s) | 157, 572, 861 |
| BstKTI | GATC | 8 cut(s) | 491, 553, 610, 688, 757, 811, 844, 885 |
| BstMBI | GATC | 8 cut(s) | 488, 550, 607, 685, 754, 808, 841, 882 |
| BstMCI | CGRYCG | 1 cut(s) | 133 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 89, 98, 263, 826 |
| BstNSI | RCATGY | 1 cut(s) | 670 |
| BstUI | CGCG | 2 cut(s) | 155, 221 |
| BstV2I | GAAGAC | 1 cut(s) | 399 |
| BstX2I | RGATCY | 2 cut(s) | 488, 882 |
| BstYI | RGATCY | 2 cut(s) | 488, 882 |
| BstZI | CGGCCG | 1 cut(s) | 130 |
| BsuI | GTATCC | 3 cut(s) | 543, 591, 600 |
| BsuRI | GGCC | 5 cut(s) | 26, 132, 517, 820, 871 |
| BtsCI | GGATG | 2 cut(s) | 30, 253 |
| BtsIMutI | CAGTG | 2 cut(s) | 280, 600 |
| Cac8I | GCNNGC | 4 cut(s) | 43, 130, 568, 802 |
| CfoI | GCGC | 3 cut(s) | 157, 572, 861 |
| Cfr10I | RCCGGY | 1 cut(s) | 128 |
| Cfr13I | GGNCC | 5 cut(s) | 515, 620, 677, 818, 869 |
| Cfr9I | CCCGGG | 1 cut(s) | 905 |
| CsiI | ACCWGGT | 1 cut(s) | 622 |
| Csp6I | GTAC | 1 cut(s) | 217 |
| CviAII | CATG | 2 cut(s) | 22, 667 |
| CviQI | GTAC | 1 cut(s) | 217 |
| DdeI | CTNAG | 2 cut(s) | 174, 270 |
| DinI | GGCGCC | 1 cut(s) | 860 |
| DpnI | GATC | 8 cut(s) | 490, 552, 609, 687, 756, 810, 843, 884 |
| DpnII | GATC | 8 cut(s) | 488, 550, 607, 685, 754, 808, 841, 882 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 17 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 17 |
| EaeI | YGGCCR | 2 cut(s) | 24, 130 |
| EagI | CGGCCG | 1 cut(s) | 130 |
| Eam1104I | CTCTTC | 1 cut(s) | 169 |
| EarI | CTCTTC | 1 cut(s) | 169 |
| EclXI | CGGCCG | 1 cut(s) | 130 |
| Eco130I | CCWWGG | 1 cut(s) | 584 |
| Eco32I | GATATC | 1 cut(s) | 506 |
| Eco47I | GGWCC | 2 cut(s) | 620, 677 |
| Eco52I | CGGCCG | 1 cut(s) | 130 |
| Eco88I | CYCGRG | 1 cut(s) | 905 |
| EcoRV | GATATC | 1 cut(s) | 506 |
| EcoT14I | CCWWGG | 1 cut(s) | 584 |
| EgeI | GGCGCC | 1 cut(s) | 860 |
| EheI | GGCGCC | 1 cut(s) | 860 |
| ErhI | CCWWGG | 1 cut(s) | 584 |
| FaeI | CATG | 2 cut(s) | 25, 670 |
| FaiI | YATR | 7 cut(s) | 23, 306, 458, 668, 814, 816, 924 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 62, 94 |
| FaqI | GGGAC | 1 cut(s) | 713 |
| FatI | CATG | 2 cut(s) | 21, 666 |
| FauNDI | CATATG | 1 cut(s) | 814 |
| Fnu4HI | GCNGC | 5 cut(s) | 39, 102, 126, 133, 821 |
| FokI | GGATG | 2 cut(s) | 17, 260 |
| Fsp4HI | GCNGC | 5 cut(s) | 39, 102, 126, 133, 821 |
| FspBI | CTAG | 4 cut(s) | 362, 585, 642, 928 |
| GlaI | GCGC | 3 cut(s) | 156, 571, 860 |
| GluI | GCNGC | 5 cut(s) | 39, 102, 126, 133, 821 |
| GsuI | CTGGAG | 4 cut(s) | 227, 477, 753, 777 |
| HaeII | RGCGCY | 2 cut(s) | 573, 862 |
| HaeIII | GGCC | 5 cut(s) | 26, 132, 517, 820, 871 |
| HapII | CCGG | 7 cut(s) | 108, 129, 238, 722, 743, 845, 906 |
| HhaI | GCGC | 3 cut(s) | 157, 572, 861 |
| Hin1I | GRCGYC | 1 cut(s) | 859 |
| Hin1II | CATG | 2 cut(s) | 25, 670 |
| Hin6I | GCGC | 3 cut(s) | 155, 570, 859 |
| HinP1I | GCGC | 3 cut(s) | 155, 570, 859 |
| HinfI | GANTC | 2 cut(s) | 370, 404 |
| HpaII | CCGG | 7 cut(s) | 108, 129, 238, 722, 743, 845, 906 |
| HphI | GGTGA | 2 cut(s) | 311, 557 |
| Hpy166II | GTNNAC | 2 cut(s) | 88, 280 |
| Hpy188I | TCNGA | 5 cut(s) | 35, 148, 273, 445, 919 |
| Hpy188III | TCNNGA | 3 cut(s) | 752, 833, 845 |
| Hpy8I | GTNNAC | 2 cut(s) | 88, 280 |
| HpyAV | CCTTC | 3 cut(s) | 106, 522, 648 |
| HpyCH4III | ACNGT | 2 cut(s) | 284, 342 |
| HpyCH4IV | ACGT | 2 cut(s) | 276, 702 |
| HpyCH4V | TGCA | 2 cut(s) | 310, 854 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 89, 98, 263, 826 |
| HpyF3I | CTNAG | 2 cut(s) | 174, 270 |
| HpySE526I | ACGT | 2 cut(s) | 276, 702 |
| Hsp92I | GRCGYC | 1 cut(s) | 859 |
| Hsp92II | CATG | 2 cut(s) | 25, 670 |
| HspAI | GCGC | 3 cut(s) | 155, 570, 859 |
| KasI | GGCGCC | 1 cut(s) | 858 |
| Kpn2I | TCCGGA | 1 cut(s) | 844 |
| KroI | GCCGGC | 1 cut(s) | 128 |
| KroNI | GCCGGC | 1 cut(s) | 130 |
| Kzo9I | GATC | 8 cut(s) | 488, 550, 607, 685, 754, 808, 841, 882 |
| LmnI | GCTCC | 1 cut(s) | 898 |
| LweI | GCATC | 1 cut(s) | 238 |
| MabI | ACCWGGT | 1 cut(s) | 622 |
| MaeI | CTAG | 4 cut(s) | 362, 585, 642, 928 |
| MaeII | ACGT | 2 cut(s) | 276, 702 |
| MalI | GATC | 8 cut(s) | 490, 552, 609, 687, 756, 810, 843, 884 |
| MboI | GATC | 8 cut(s) | 488, 550, 607, 685, 754, 808, 841, 882 |
| MboII | GAAGA | 3 cut(s) | 156, 379, 399 |
| MflI | RGATCY | 2 cut(s) | 488, 882 |
| MhlI | GDGCHC | 1 cut(s) | 802 |
| MluCI | AATT | 3 cut(s) | 287, 328, 395 |
| MluI | ACGCGT | 1 cut(s) | 219 |
| Mly113I | GGCGCC | 1 cut(s) | 859 |
| MlyI | GAGTC | 1 cut(s) | 413 |
| MmeI | TCCRAC | 3 cut(s) | 481, 655, 685 |
| MnlI | CCTC | 8 cut(s) | 115, 169, 172, 313, 394, 728, 768, 801 |
| MroI | TCCGGA | 1 cut(s) | 844 |
| MroNI | GCCGGC | 1 cut(s) | 128 |
| MroXI | GAANNNNTTC | 1 cut(s) | 637 |
| MseI | TTAA | 2 cut(s) | 119, 345 |
| MslI | CAYNNNNRTG | 1 cut(s) | 362 |
| MspI | CCGG | 7 cut(s) | 108, 129, 238, 722, 743, 845, 906 |
| Mva1269I | GAATGC | 1 cut(s) | 639 |
| MvnI | CGCG | 2 cut(s) | 155, 221 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 89, 98, 263, 826 |
| NaeI | GCCGGC | 1 cut(s) | 130 |
| NarI | GGCGCC | 1 cut(s) | 859 |
| NciI | CCSGG | 5 cut(s) | 239, 723, 744, 906, 907 |
| NdeI | CATATG | 1 cut(s) | 814 |
| NdeII | GATC | 8 cut(s) | 488, 550, 607, 685, 754, 808, 841, 882 |
| NgoMIV | GCCGGC | 1 cut(s) | 128 |
| NlaIII | CATG | 2 cut(s) | 25, 670 |
| NlaIV | GGNNCC | 4 cut(s) | 679, 860, 870, 884 |
| NspI | RCATGY | 1 cut(s) | 670 |
| OliI | CACNNNNGTG | 1 cut(s) | 362 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 81 |
| PctI | GAATGC | 1 cut(s) | 639 |
| PdiI | GCCGGC | 1 cut(s) | 130 |
| PdmI | GAANNNNTTC | 1 cut(s) | 637 |
| PfeI | GAWTC | 1 cut(s) | 370 |
| PflFI | GACNNNGTC | 1 cut(s) | 71 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 500, 542, 599 |
| PfoI | TCCNGGA | 3 cut(s) | 493, 616, 730 |
| PkrI | GCNGC | 5 cut(s) | 40, 103, 127, 134, 822 |
| PleI | GAGTC | 1 cut(s) | 412 |
| PluTI | GGCGCC | 1 cut(s) | 862 |
| PpsI | GAGTC | 1 cut(s) | 412 |
| Psp1406I | AACGTT | 1 cut(s) | 276 |
| PspN4I | GGNNCC | 4 cut(s) | 679, 860, 870, 884 |
| PspPI | GGNCC | 5 cut(s) | 515, 620, 677, 818, 869 |
| PsuI | RGATCY | 2 cut(s) | 488, 882 |
| PsyI | GACNNNGTC | 1 cut(s) | 71 |
| RsaI | GTAC | 1 cut(s) | 218 |
| RsaNI | GTAC | 1 cut(s) | 217 |
| RseI | CAYNNNNRTG | 1 cut(s) | 362 |
| SaqAI | TTAA | 2 cut(s) | 119, 345 |
| SatI | GCNGC | 5 cut(s) | 39, 102, 126, 133, 821 |
| Sau3AI | GATC | 8 cut(s) | 488, 550, 607, 685, 754, 808, 841, 882 |
| Sau96I | GGNCC | 5 cut(s) | 515, 620, 677, 818, 869 |
| SchI | GAGTC | 1 cut(s) | 413 |
| SduI | GDGCHC | 1 cut(s) | 802 |
| SexAI | ACCWGGT | 1 cut(s) | 622 |
| SfaNI | GCATC | 1 cut(s) | 238 |
| SfoI | GGCGCC | 1 cut(s) | 860 |
| SinI | GGWCC | 2 cut(s) | 620, 677 |
| SmaI | CCCGGG | 1 cut(s) | 907 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 362 |
| SmlI | CTYRAG | 1 cut(s) | 381 |
| SmoI | CTYRAG | 1 cut(s) | 381 |
| Sse9I | AATT | 3 cut(s) | 287, 328, 395 |
| SsiI | CCGC | 7 cut(s) | 39, 55, 102, 126, 133, 168, 821 |
| SspDI | GGCGCC | 1 cut(s) | 858 |
| SspMI | CTAG | 4 cut(s) | 362, 585, 642, 928 |
| StyI | CCWWGG | 1 cut(s) | 584 |
| TaaI | ACNGT | 2 cut(s) | 284, 342 |
| TaiI | ACGT | 2 cut(s) | 279, 705 |
| TaqI | TCGA | 2 cut(s) | 392, 508 |
| TaqII | GACCGA | 1 cut(s) | 7 |
| TasI | AATT | 3 cut(s) | 287, 328, 395 |
| TauI | GCSGC | 5 cut(s) | 41, 104, 128, 135, 823 |
| TfiI | GAWTC | 1 cut(s) | 370 |
| Tru1I | TTAA | 2 cut(s) | 119, 345 |
| Tru9I | TTAA | 2 cut(s) | 119, 345 |
| TscAI | CASTG | 2 cut(s) | 287, 600 |
| TspMI | CCCGGG | 1 cut(s) | 905 |
| TspRI | CASTG | 2 cut(s) | 287, 600 |
| Tth111I | GACNNNGTC | 1 cut(s) | 71 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 500, 542, 599 |
| VpaK11BI | GGWCC | 2 cut(s) | 620, 677 |
| XapI | RAATTY | 1 cut(s) | 287 |
| XceI | RCATGY | 1 cut(s) | 670 |
| XmaI | CCCGGG | 1 cut(s) | 905 |
| XmaJI | CCTAGG | 1 cut(s) | 584 |
| XmnI | GAANNNNTTC | 1 cut(s) | 637 |
| XspI | CTAG | 4 cut(s) | 362, 585, 642, 928 |