Rmu_sc0002031.1_g000004

Proteasome

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002031.1
Physical Location & Seq
Forward (+)
13803 .. 16095
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002031.1_g000004.1.cds

Sequence Viewer

Length: 930 bp
atggcgaacgacaagtcggtcatggccgtcatccgagccgcacgcccatctttccgcaacgaaaacgacaaggtcgcctttgccgttcacgcttccttcgccgcctccggctacgagttaatcgccgccggccgccctgctttttccgaaaacgcgctctcctcttccgcaactgaggaagtgggtattgagaaatggaacgagctggagaacgagtacgcgttcgtgtatttgaaccgggaaaaggatgctctggctgatggggcttctcagaacgttcactgtgaatttgatgttggtgattatgtgcaagaaaatgagggcagtaattactcatcacagtttaagaacttggacaccctagtgaagaatctcaacgctcaagttttgtcgaaattggaggagtcttccacacccaagccaacaagggaaactggcagttcagacttgactaatatatcagcaaatgagcctgggcgtggtgctggatctccaggagttggatatcgacctgggcctggtgctggaaggtatccaggtggtggtgatgatctttatcctggggctggcgctggaatgtatcctaggtatccagtgggtggtagcgatctttatcctggacctggtgctggaatgccttctaggggtgcttttgacgatggaagcatgtttgttggacccaatgatcgtagatttggggacgttggacaacctgggtttccggggtttcctggaggactaccgggtattcgtgatcctcggtttggtgctgaaagaccagatggtgttcctccaggtgctcgctttgatccatatgggccgcctgggcttcctgattttgatccggattttgcaaggcgcccacaggggccaggaagcaggatccaccctgacttggagcaacccgggagtggttcggactatatctag

Protein Analysis

309

Amino Acids

32.63

Weight (kDa)

4.7

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 858
AccB7I CCANNNNNTGG 3 cut(s) 500, 542, 599
AccII CGCG 2 cut(s) 155, 221
AccIII TCCGGA 1 cut(s) 844
AciI CCGC 7 cut(s) 39, 55, 102, 126, 133, 168, 821
AclI AACGTT 1 cut(s) 276
AclWI GGATC 6 cut(s) 496, 749, 803, 836, 877, 890
AcoI YGGCCR 2 cut(s) 24, 130
AcsI RAATTY 1 cut(s) 287
AcyI GRCGYC 1 cut(s) 859
AfaI GTAC 1 cut(s) 218
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 1 cut(s) 235
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
AleI CACNNNNGTG 1 cut(s) 362
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
Alw21I GWGCWC 1 cut(s) 802
AlwI GGATC 6 cut(s) 496, 749, 803, 836, 877, 890
Ama87I CYCGRG 1 cut(s) 905
Aor13HI TCCGGA 1 cut(s) 844
AoxI GGCC 5 cut(s) 24, 130, 515, 818, 869
ApoI RAATTY 1 cut(s) 287
ArsI GACNNNNNNTTYG 1 cut(s) 31
Asp700I GAANNNNTTC 1 cut(s) 637
AspA2I CCTAGG 1 cut(s) 584
AspLEI GCGC 3 cut(s) 157, 572, 861
AspS9I GGNCC 5 cut(s) 515, 620, 677, 818, 869
AsuC2I CCSGG 5 cut(s) 239, 723, 744, 906, 907
AsuHPI GGTGA 2 cut(s) 311, 557
AvaI CYCGRG 1 cut(s) 905
AvaII GGWCC 2 cut(s) 620, 677
AvrII CCTAGG 1 cut(s) 584
BamHI GGATCC 1 cut(s) 882
BanI GGYRCC 1 cut(s) 858
BbsI GAAGAC 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 802
BccI CCATC 4 cut(s) 55, 254, 653, 776
BceAI ACGGC 2 cut(s) 11, 68
BciVI GTATCC 3 cut(s) 543, 591, 600
BcnI CCSGG 5 cut(s) 239, 723, 744, 906, 907
BfaI CTAG 4 cut(s) 362, 585, 642, 928
BfoI RGCGCY 2 cut(s) 573, 862
BfuI GTATCC 3 cut(s) 543, 591, 600
BglI GCCNNNNNGGC 1 cut(s) 826
BisI GCNGC 5 cut(s) 39, 102, 126, 133, 821
BlnI CCTAGG 1 cut(s) 584
BlsI GCNGC 5 cut(s) 40, 103, 127, 134, 822
Bme18I GGWCC 2 cut(s) 620, 677
BmeT110I CYCGRG 1 cut(s) 905
BmgT120I GGNCC 5 cut(s) 515, 620, 677, 818, 869
BmiI GGNNCC 4 cut(s) 679, 860, 870, 884
BmsI GCATC 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 399
BpmI CTGGAG 4 cut(s) 227, 477, 753, 777
BpuEI CTTGAG 1 cut(s) 366
BpuMI CCSGG 5 cut(s) 239, 723, 744, 906, 907
BsaBI GATNNNNATC 3 cut(s) 555, 612, 840
BsaHI GRCGYC 1 cut(s) 859
BsaJI CCNNGG 9 cut(s) 473, 512, 560, 584, 713, 722, 758, 824, 905
BsaWI WCCGGW 1 cut(s) 844
BsaXI ACNNNNNCTCC 4 cut(s) 143, 173, 200, 230
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 2 cut(s) 439, 593
Bse8I GATNNNNATC 3 cut(s) 555, 612, 840
BseAI TCCGGA 1 cut(s) 844
BseDI CCNNGG 9 cut(s) 473, 512, 560, 584, 713, 722, 758, 824, 905
BseGI GGATG 2 cut(s) 30, 253
BseJI GATNNNNATC 3 cut(s) 555, 612, 840
BseMII CTCAG 2 cut(s) 165, 284
BseNI ACTGG 2 cut(s) 439, 593
BseRI GAGGAG 2 cut(s) 151, 416
BseX3I CGGCCG 1 cut(s) 130
Bsh1236I CGCG 2 cut(s) 155, 221
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 5 cut(s) 26, 132, 517, 820, 871
BshNI GGYRCC 1 cut(s) 858
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 802
BsiHKCI CYCGRG 1 cut(s) 905
BsiSI CCGG 7 cut(s) 108, 129, 238, 722, 743, 845, 906
BslFI GGGAC 1 cut(s) 713
BsmFI GGGAC 1 cut(s) 713
BsmI GAATGC 1 cut(s) 639
BsnI GGCC 5 cut(s) 26, 132, 517, 820, 871
BsoBI CYCGRG 1 cut(s) 905
Bsp1286I GDGCHC 1 cut(s) 802
Bsp13I TCCGGA 1 cut(s) 844
Bsp143I GATC 8 cut(s) 488, 550, 607, 685, 754, 808, 841, 882
BspACI CCGC 7 cut(s) 39, 55, 102, 126, 133, 168, 821
BspANI GGCC 5 cut(s) 26, 132, 517, 820, 871
BspCNI CTCAG 2 cut(s) 166, 283
BspEI TCCGGA 1 cut(s) 844
BspFNI CGCG 2 cut(s) 155, 221
BspLI GGNNCC 4 cut(s) 679, 860, 870, 884
BspPI GGATC 6 cut(s) 496, 749, 803, 836, 877, 890
BspT107I GGYRCC 1 cut(s) 858
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 2 cut(s) 439, 593
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 9 cut(s) 473, 512, 560, 584, 713, 722, 758, 824, 905
BssMI GATC 8 cut(s) 488, 550, 607, 685, 754, 808, 841, 882
BssNI GRCGYC 1 cut(s) 859
BssT1I CCWWGG 1 cut(s) 584
Bst4CI ACNGT 2 cut(s) 284, 342
Bst6I CTCTTC 1 cut(s) 169
BstACI GRCGYC 1 cut(s) 859
BstC8I GCNNGC 4 cut(s) 43, 130, 568, 802
BstDEI CTNAG 2 cut(s) 174, 270
BstF5I GGATG 2 cut(s) 30, 253
BstFNI CGCG 2 cut(s) 155, 221
BstH2I RGCGCY 2 cut(s) 573, 862
BstHHI GCGC 3 cut(s) 157, 572, 861
BstKTI GATC 8 cut(s) 491, 553, 610, 688, 757, 811, 844, 885
BstMBI GATC 8 cut(s) 488, 550, 607, 685, 754, 808, 841, 882
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 4 cut(s) 89, 98, 263, 826
BstNSI RCATGY 1 cut(s) 670
BstUI CGCG 2 cut(s) 155, 221
BstV2I GAAGAC 1 cut(s) 399
BstX2I RGATCY 2 cut(s) 488, 882
BstYI RGATCY 2 cut(s) 488, 882
BstZI CGGCCG 1 cut(s) 130
BsuI GTATCC 3 cut(s) 543, 591, 600
BsuRI GGCC 5 cut(s) 26, 132, 517, 820, 871
BtsCI GGATG 2 cut(s) 30, 253
BtsIMutI CAGTG 2 cut(s) 280, 600
Cac8I GCNNGC 4 cut(s) 43, 130, 568, 802
CfoI GCGC 3 cut(s) 157, 572, 861
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 5 cut(s) 515, 620, 677, 818, 869
Cfr9I CCCGGG 1 cut(s) 905
CsiI ACCWGGT 1 cut(s) 622
Csp6I GTAC 1 cut(s) 217
CviAII CATG 2 cut(s) 22, 667
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 2 cut(s) 174, 270
DinI GGCGCC 1 cut(s) 860
DpnI GATC 8 cut(s) 490, 552, 609, 687, 756, 810, 843, 884
DpnII GATC 8 cut(s) 488, 550, 607, 685, 754, 808, 841, 882
DrdI GACNNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 17
EaeI YGGCCR 2 cut(s) 24, 130
EagI CGGCCG 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
EclXI CGGCCG 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 584
Eco32I GATATC 1 cut(s) 506
Eco47I GGWCC 2 cut(s) 620, 677
Eco52I CGGCCG 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 905
EcoRV GATATC 1 cut(s) 506
EcoT14I CCWWGG 1 cut(s) 584
EgeI GGCGCC 1 cut(s) 860
EheI GGCGCC 1 cut(s) 860
ErhI CCWWGG 1 cut(s) 584
FaeI CATG 2 cut(s) 25, 670
FaiI YATR 7 cut(s) 23, 306, 458, 668, 814, 816, 924
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FaqI GGGAC 1 cut(s) 713
FatI CATG 2 cut(s) 21, 666
FauNDI CATATG 1 cut(s) 814
Fnu4HI GCNGC 5 cut(s) 39, 102, 126, 133, 821
FokI GGATG 2 cut(s) 17, 260
Fsp4HI GCNGC 5 cut(s) 39, 102, 126, 133, 821
FspBI CTAG 4 cut(s) 362, 585, 642, 928
GlaI GCGC 3 cut(s) 156, 571, 860
GluI GCNGC 5 cut(s) 39, 102, 126, 133, 821
GsuI CTGGAG 4 cut(s) 227, 477, 753, 777
HaeII RGCGCY 2 cut(s) 573, 862
HaeIII GGCC 5 cut(s) 26, 132, 517, 820, 871
HapII CCGG 7 cut(s) 108, 129, 238, 722, 743, 845, 906
HhaI GCGC 3 cut(s) 157, 572, 861
Hin1I GRCGYC 1 cut(s) 859
Hin1II CATG 2 cut(s) 25, 670
Hin6I GCGC 3 cut(s) 155, 570, 859
HinP1I GCGC 3 cut(s) 155, 570, 859
HinfI GANTC 2 cut(s) 370, 404
HpaII CCGG 7 cut(s) 108, 129, 238, 722, 743, 845, 906
HphI GGTGA 2 cut(s) 311, 557
Hpy166II GTNNAC 2 cut(s) 88, 280
Hpy188I TCNGA 5 cut(s) 35, 148, 273, 445, 919
Hpy188III TCNNGA 3 cut(s) 752, 833, 845
Hpy8I GTNNAC 2 cut(s) 88, 280
HpyAV CCTTC 3 cut(s) 106, 522, 648
HpyCH4III ACNGT 2 cut(s) 284, 342
HpyCH4IV ACGT 2 cut(s) 276, 702
HpyCH4V TGCA 2 cut(s) 310, 854
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 98, 263, 826
HpyF3I CTNAG 2 cut(s) 174, 270
HpySE526I ACGT 2 cut(s) 276, 702
Hsp92I GRCGYC 1 cut(s) 859
Hsp92II CATG 2 cut(s) 25, 670
HspAI GCGC 3 cut(s) 155, 570, 859
KasI GGCGCC 1 cut(s) 858
Kpn2I TCCGGA 1 cut(s) 844
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
Kzo9I GATC 8 cut(s) 488, 550, 607, 685, 754, 808, 841, 882
LmnI GCTCC 1 cut(s) 898
LweI GCATC 1 cut(s) 238
MabI ACCWGGT 1 cut(s) 622
MaeI CTAG 4 cut(s) 362, 585, 642, 928
MaeII ACGT 2 cut(s) 276, 702
MalI GATC 8 cut(s) 490, 552, 609, 687, 756, 810, 843, 884
MboI GATC 8 cut(s) 488, 550, 607, 685, 754, 808, 841, 882
MboII GAAGA 3 cut(s) 156, 379, 399
MflI RGATCY 2 cut(s) 488, 882
MhlI GDGCHC 1 cut(s) 802
MluCI AATT 3 cut(s) 287, 328, 395
MluI ACGCGT 1 cut(s) 219
Mly113I GGCGCC 1 cut(s) 859
MlyI GAGTC 1 cut(s) 413
MmeI TCCRAC 3 cut(s) 481, 655, 685
MnlI CCTC 8 cut(s) 115, 169, 172, 313, 394, 728, 768, 801
MroI TCCGGA 1 cut(s) 844
MroNI GCCGGC 1 cut(s) 128
MroXI GAANNNNTTC 1 cut(s) 637
MseI TTAA 2 cut(s) 119, 345
MslI CAYNNNNRTG 1 cut(s) 362
MspI CCGG 7 cut(s) 108, 129, 238, 722, 743, 845, 906
Mva1269I GAATGC 1 cut(s) 639
MvnI CGCG 2 cut(s) 155, 221
MwoI GCNNNNNNNGC 4 cut(s) 89, 98, 263, 826
NaeI GCCGGC 1 cut(s) 130
NarI GGCGCC 1 cut(s) 859
NciI CCSGG 5 cut(s) 239, 723, 744, 906, 907
NdeI CATATG 1 cut(s) 814
NdeII GATC 8 cut(s) 488, 550, 607, 685, 754, 808, 841, 882
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 2 cut(s) 25, 670
NlaIV GGNNCC 4 cut(s) 679, 860, 870, 884
NspI RCATGY 1 cut(s) 670
OliI CACNNNNGTG 1 cut(s) 362
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 1 cut(s) 639
PdiI GCCGGC 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 637
PfeI GAWTC 1 cut(s) 370
PflFI GACNNNGTC 1 cut(s) 71
PflMI CCANNNNNTGG 3 cut(s) 500, 542, 599
PfoI TCCNGGA 3 cut(s) 493, 616, 730
PkrI GCNGC 5 cut(s) 40, 103, 127, 134, 822
PleI GAGTC 1 cut(s) 412
PluTI GGCGCC 1 cut(s) 862
PpsI GAGTC 1 cut(s) 412
Psp1406I AACGTT 1 cut(s) 276
PspN4I GGNNCC 4 cut(s) 679, 860, 870, 884
PspPI GGNCC 5 cut(s) 515, 620, 677, 818, 869
PsuI RGATCY 2 cut(s) 488, 882
PsyI GACNNNGTC 1 cut(s) 71
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 362
SaqAI TTAA 2 cut(s) 119, 345
SatI GCNGC 5 cut(s) 39, 102, 126, 133, 821
Sau3AI GATC 8 cut(s) 488, 550, 607, 685, 754, 808, 841, 882
Sau96I GGNCC 5 cut(s) 515, 620, 677, 818, 869
SchI GAGTC 1 cut(s) 413
SduI GDGCHC 1 cut(s) 802
SexAI ACCWGGT 1 cut(s) 622
SfaNI GCATC 1 cut(s) 238
SfoI GGCGCC 1 cut(s) 860
SinI GGWCC 2 cut(s) 620, 677
SmaI CCCGGG 1 cut(s) 907
SmiMI CAYNNNNRTG 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 381
SmoI CTYRAG 1 cut(s) 381
Sse9I AATT 3 cut(s) 287, 328, 395
SsiI CCGC 7 cut(s) 39, 55, 102, 126, 133, 168, 821
SspDI GGCGCC 1 cut(s) 858
SspMI CTAG 4 cut(s) 362, 585, 642, 928
StyI CCWWGG 1 cut(s) 584
TaaI ACNGT 2 cut(s) 284, 342
TaiI ACGT 2 cut(s) 279, 705
TaqI TCGA 2 cut(s) 392, 508
TaqII GACCGA 1 cut(s) 7
TasI AATT 3 cut(s) 287, 328, 395
TauI GCSGC 5 cut(s) 41, 104, 128, 135, 823
TfiI GAWTC 1 cut(s) 370
Tru1I TTAA 2 cut(s) 119, 345
Tru9I TTAA 2 cut(s) 119, 345
TscAI CASTG 2 cut(s) 287, 600
TspMI CCCGGG 1 cut(s) 905
TspRI CASTG 2 cut(s) 287, 600
Tth111I GACNNNGTC 1 cut(s) 71
Van91I CCANNNNNTGG 3 cut(s) 500, 542, 599
VpaK11BI GGWCC 2 cut(s) 620, 677
XapI RAATTY 1 cut(s) 287
XceI RCATGY 1 cut(s) 670
XmaI CCCGGG 1 cut(s) 905
XmaJI CCTAGG 1 cut(s) 584
XmnI GAANNNNTTC 1 cut(s) 637
XspI CTAG 4 cut(s) 362, 585, 642, 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.