Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Reverse (-)

67927286 .. 67936684

Gene Structure 9399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG419600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGATCAACGGAGGCCCGAGATACCTCTGTCGCCGGCTGAGAAAACCTGCACCTGCTATTGAAGGCCTCGAGGAAGTGGGTATTGAGAAATGGAACGAGCTCGAGAACAAGTACGCGTTCATGTATTTGAACCCGAAAAAGGGTTCGAAGAAGGTTCTAGTGAAGTGTCTTGTGATTTATGGAACATTGAGTGTTGATGCTTTGGCTGATGGGGCTTCTCAGAACGTTCACTGTGAATTTAATGTTGGTGATTATGTGCAAGAAAATGAGGGCAGTAATTACTCATCACAGTTTAAGAACTTGGACACCCCAGTGAAGAATCTCAACCCTCAAGTTTTGTTGAAATTGGAGGAGTCTTCCACACCCAAGGCAACAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

126

Amino Acids

14.12

Weight (kDa)

8.4

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI31_Prot_N	PF11566	27 - 117	2.5e-12	PI31 proteasome regulator N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	61
AbsI	CCTCGAGG	1 cut(s)	68
Acc36I	ACCTGC	2 cut(s)	55, 61
AccII	CGCG	1 cut(s)	116
AclI	AACGTT	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	236
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	139, 140
AflIII	ACRYGT	1 cut(s)	114
AgsI	TTSAA	3 cut(s)	62, 130, 343
AjuI	GAANNNNNNNTTGG	2 cut(s)	228, 260
AleI	CACNNNNGTG	1 cut(s)	311
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
Alw21I	GWGCWC	1 cut(s)	102
Ama87I	CYCGRG	3 cut(s)	16, 68, 101
AoxI	GGCC	2 cut(s)	13, 64
ApoI	RAATTY	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	260
AsuII	TTCGAA	1 cut(s)	146
AvaI	CYCGRG	3 cut(s)	16, 68, 101
BaeI	ACNNNNGTAYC	2 cut(s)	13, 46
BanII	GRGCYC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	102
BccI	CCATC	1 cut(s)	203
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	1 cut(s)	158
BfuAI	ACCTGC	2 cut(s)	55, 61
BmeT110I	CYCGRG	3 cut(s)	16, 68, 101
BmgT120I	GGNCC	1 cut(s)	14
BmrI	ACTGGG	1 cut(s)	305
BmsI	GCATC	1 cut(s)	187
BmuI	ACTGGG	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	348
Bpu14I	TTCGAA	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 140
Bse118I	RCCGGY	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	366
BseLI	CCNNNNNNNGG	2 cut(s)	139, 140
BseMII	CTCAG	2 cut(s)	29, 233
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	1 cut(s)	365
BsgI	GTGCAG	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	2 cut(s)	15, 66
BsiHKAI	GWGCWC	1 cut(s)	102
BsiHKCI	CYCGRG	3 cut(s)	16, 68, 101
BsiSI	CCGG	1 cut(s)	34
BslI	CCNNNNNNNGG	2 cut(s)	139, 140
BsnI	GGCC	2 cut(s)	15, 66
BsoBI	CYCGRG	3 cut(s)	16, 68, 101
Bsp119I	TTCGAA	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	3
BspANI	GGCC	2 cut(s)	15, 66
BspCNI	CTCAG	2 cut(s)	30, 232
BspFNI	CGCG	1 cut(s)	116
BspMI	ACCTGC	2 cut(s)	55, 61
BspT104I	TTCGAA	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	233, 291
BstBI	TTCGAA	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	38, 219
BstFNI	CGCG	1 cut(s)	116
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstUI	CGCG	1 cut(s)	116
BstV2I	GAAGAC	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	15, 66
BtsIMutI	CAGTG	2 cut(s)	229, 318
BveI	ACCTGC	2 cut(s)	55, 61
Cac8I	GCNNGC	1 cut(s)	35
Cfr10I	RCCGGY	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	6 cut(s)	15, 37, 66, 100, 206, 215
CviKI_1	RGCY	6 cut(s)	15, 37, 66, 100, 206, 215
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	2 cut(s)	38, 219
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	366
Eco147I	AGGCCT	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	100
Eco88I	CYCGRG	3 cut(s)	16, 68, 101
EcoICRI	GAGCTC	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	1 cut(s)	124
FaiI	YATR	3 cut(s)	122, 180, 255
FatI	CATG	1 cut(s)	120
FbaI	TGATCA	1 cut(s)	3
FriOI	GRGCYC	1 cut(s)	102
FspBI	CTAG	1 cut(s)	158
HaeIII	GGCC	2 cut(s)	15, 66
HapII	CCGG	1 cut(s)	34
Hin1II	CATG	1 cut(s)	124
HinfI	GANTC	2 cut(s)	319, 353
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	2 cut(s)	56, 145
HpyCH4III	ACNGT	2 cut(s)	233, 291
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	2 cut(s)	50, 259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	2 cut(s)	38, 219
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	124
KroI	GCCGGC	1 cut(s)	33
KroNI	GCCGGC	1 cut(s)	35
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	4 cut(s)	47, 60, 66, 324
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	225
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	160, 328, 348
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	3 cut(s)	236, 277, 344
MluI	ACGCGT	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	7 cut(s)	5, 35, 64, 77, 262, 339, 343
MroNI	GCCGGC	1 cut(s)	33
MseI	TTAA	2 cut(s)	240, 294
MslI	CAYNNNNRTG	1 cut(s)	311
MspI	CCGG	1 cut(s)	34
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	212
NaeI	GCCGGC	1 cut(s)	35
NdeII	GATC	1 cut(s)	3
NgoMIV	GCCGGC	1 cut(s)	33
NlaIII	CATG	1 cut(s)	124
NspV	TTCGAA	1 cut(s)	146
OliI	CACNNNNGTG	1 cut(s)	311
PaeR7I	CTCGAG	2 cut(s)	68, 101
PaqCI	CACCTGC	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	66
PdiI	GCCGGC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	319
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	102
Psp1406I	AACGTT	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	14
PspXI	VCTCGAGB	1 cut(s)	68
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	311
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	240, 294
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	7 cut(s)	27, 49, 55, 102, 156, 228, 380
SfaNI	GCATC	1 cut(s)	187
Sfr274I	CTCGAG	2 cut(s)	68, 101
SfuI	TTCGAA	1 cut(s)	146
SlaI	CTCGAG	2 cut(s)	68, 101
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	3 cut(s)	68, 101, 330
SmoI	CTYRAG	3 cut(s)	68, 101, 330
Sse9I	AATT	3 cut(s)	236, 277, 344
SseBI	AGGCCT	1 cut(s)	66
SspMI	CTAG	1 cut(s)	158
SstI	GAGCTC	1 cut(s)	102
StuI	AGGCCT	1 cut(s)	66
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	233, 291
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	3 cut(s)	69, 102, 146
TasI	AATT	3 cut(s)	236, 277, 344
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	2 cut(s)	240, 294
Tru9I	TTAA	2 cut(s)	240, 294
TscAI	CASTG	2 cut(s)	236, 318
TspDTI	ATGAA	1 cut(s)	109
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	2 cut(s)	236, 318
XapI	RAATTY	1 cut(s)	236
XhoI	CTCGAG	2 cut(s)	68, 101
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.