Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Forward (+)

25357968 .. 25361004

Gene Structure 3037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G264400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCGAGCGACAAGTCGGTGATGGCAGTGATCAGAGCAGCGAGGCCATCATTTCGCAATAACAACGACAAGGTCGTCTTTGCCGTTCACGCCTCCTTCCTCGCCTCCGGCTACGTGCTCACCGCCGCTGGCCCCCCTGCTTTTTCCGATTCTGCTCTCTCTTCGCCTTCGACTGATGAAGTGGGTATGGACCAGTGGAACGAGCTTGACGACGAGTACGCGTTCGTCTATGTGAACCCAGAAAAGGGTTCGAAAAAGGTGCTGGTTAAGTGCCTTGTAATGAACGATAAATTGCTTGTAGATGCTCTGGCTGATGGGAGTTCTGAGCCCGTCCATCTTGAAATCAACGTTGGTGACCATGTTGGAGAGAATGGGGGTAGCAATTACTCTACACAGTTCAAGAATTTGGAGAAACTGGTGAAGAGTCTGGAAACGCAAGTTTTGACTAAATTAGATGGGTCTTCCAGTGTCAGTTCCTCTAGTAACCCTTCAAGTTCAGAAAGGAATGACAGATCAACGAGTGAGCCTGTTTATGGACCTTCTGGCTCCCAACCTAATCCTTCAGGAATGGTGTTTCCTCCTATTAATCCTACTGGTGGTTTTAGTGATCTTCTTCCTGGGCCTGGTGCTGGAATGTATCCTACTAGGGGCGGTTTTAGCAGTGGGGGCATGCTTCTAGGACCCAATGATCCTCGGTGGTTTGGTGGCGTTGGAGAGCCTGGGTTTCCAGGAGGAGAACCGGGTTTTCCTCGTTTTGATCCCCATAGGCCAGCGGGTGTTCCACCAGGTGCCCGTTTTGATCCATATGGCCCTCCGGGAGTTCCTGGTTTTGAGCCTAATCGGTTTGCAAGGAATCCGCGGAGGCCAGGGAGCGGGACTCATCCAGACCTGGAGCAGTTTGGGGGTGGCTCAGATTTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

308

Amino Acids

32.29

Weight (kDa)

5.07

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	788
AccBSI	CCGCTC	1 cut(s)	873
AccII	CGCG	2 cut(s)	221, 859
AciI	CCGC	7 cut(s)	123, 126, 651, 773, 857, 859, 873
AclI	AACGTT	1 cut(s)	348
AclWI	GGATC	3 cut(s)	683, 752, 794
AcsI	RAATTY	1 cut(s)	403
AcuI	CTGAAG	1 cut(s)	546
AdeI	CACNNNGTG	1 cut(s)	788
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	8 cut(s)	244, 245, 533, 596, 623, 629, 647, 872
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	3 cut(s)	341, 400, 492
AjnI	CCWGG	8 cut(s)	616, 622, 718, 727, 784, 823, 865, 888
AjuI	GAANNNNNNNTTGG	2 cut(s)	333, 365
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw21I	GWGCWC	1 cut(s)	120
AlwI	GGATC	3 cut(s)	683, 752, 794
AoxI	GGCC	6 cut(s)	44, 130, 620, 767, 808, 863
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	403
AseI	ATTAAT	1 cut(s)	585
AspS9I	GGNCC	6 cut(s)	131, 190, 536, 620, 680, 809
AsuC2I	CCSGG	2 cut(s)	741, 816
AsuHPI	GGTGA	4 cut(s)	31, 112, 365, 430
AsuII	TTCGAA	1 cut(s)	251
AvaII	GGWCC	3 cut(s)	190, 536, 680
BaeGI	GKGCMC	1 cut(s)	793
BanI	GGYRCC	1 cut(s)	788
BanII	GRGCYC	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	5 cut(s)	16, 55, 308, 342, 449
BceAI	ACGGC	1 cut(s)	68
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BciT130I	CCWGG	8 cut(s)	618, 624, 720, 729, 786, 825, 867, 890
BciVI	GTATCC	1 cut(s)	648
BclI	TGATCA	1 cut(s)	30
BcnI	CCSGG	2 cut(s)	741, 816
BfaI	CTAG	3 cut(s)	480, 645, 677
BfuI	GTATCC	1 cut(s)	648
BisI	GCNGC	2 cut(s)	39, 126
BlsI	GCNGC	2 cut(s)	40, 127
Bme18I	GGWCC	3 cut(s)	190, 536, 680
BmgT120I	GGNCC	6 cut(s)	131, 190, 536, 620, 680, 809
BmiI	GGNNCC	4 cut(s)	133, 547, 682, 790
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	453
BplI	GAGNNNNNCTC	2 cut(s)	862, 894
BpmI	CTGGAG	1 cut(s)	911
Bpu14I	TTCGAA	1 cut(s)	251
BpuMI	CCSGG	2 cut(s)	741, 816
BsaAI	YACGTR	1 cut(s)	115
BsaJI	CCNNGG	5 cut(s)	617, 692, 719, 857, 866
Bsc4I	CCNNNNNNNGG	8 cut(s)	244, 245, 533, 596, 623, 629, 647, 872
Bse1I	ACTGG	4 cut(s)	193, 420, 465, 598
BseBI	CCWGG	8 cut(s)	618, 624, 720, 729, 786, 825, 867, 890
BseDI	CCNNGG	5 cut(s)	617, 692, 719, 857, 866
BseGI	GGATG	1 cut(s)	880
BseLI	CCNNNNNNNGG	8 cut(s)	244, 245, 533, 596, 623, 629, 647, 872
BseMII	CTCAG	2 cut(s)	315, 924
BseNI	ACTGG	4 cut(s)	193, 420, 465, 598
BseRI	GAGGAG	1 cut(s)	747
BseSI	GKGCMC	1 cut(s)	793
BseXI	GCAGC	1 cut(s)	50
Bsh1236I	CGCG	2 cut(s)	221, 859
BshFI	GGCC	6 cut(s)	46, 132, 622, 769, 810, 865
BshNI	GGYRCC	1 cut(s)	788
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	3 cut(s)	108, 740, 815
BslFI	GGGAC	1 cut(s)	889
BslI	CCNNNNNNNGG	8 cut(s)	244, 245, 533, 596, 623, 629, 647, 872
BsmFI	GGGAC	1 cut(s)	889
BsnI	GGCC	6 cut(s)	46, 132, 622, 769, 810, 865
Bsp119I	TTCGAA	1 cut(s)	251
Bsp1286I	GDGCHC	3 cut(s)	120, 330, 793
Bsp143I	GATC	6 cut(s)	30, 512, 607, 688, 757, 799
BspACI	CCGC	7 cut(s)	123, 126, 651, 773, 857, 859, 873
BspANI	GGCC	6 cut(s)	46, 132, 622, 769, 810, 865
BspCNI	CTCAG	2 cut(s)	316, 923
BspFNI	CGCG	2 cut(s)	221, 859
BspLI	GGNNCC	4 cut(s)	133, 547, 682, 790
BspPI	GGATC	3 cut(s)	683, 752, 794
BspT104I	TTCGAA	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	788
BsrBI	CCGCTC	1 cut(s)	873
BsrI	ACTGG	4 cut(s)	193, 420, 465, 598
BssECI	CCNNGG	5 cut(s)	617, 692, 719, 857, 866
BssMI	GATC	6 cut(s)	30, 512, 607, 688, 757, 799
Bst2UI	CCWGG	8 cut(s)	618, 624, 720, 729, 786, 825, 867, 890
Bst4CI	ACNGT	1 cut(s)	396
Bst6I	CTCTTC	2 cut(s)	166, 416
BstBAI	YACGTR	1 cut(s)	115
BstBI	TTCGAA	1 cut(s)	251
BstC8I	GCNNGC	4 cut(s)	7, 130, 671, 771
BstDEI	CTNAG	2 cut(s)	324, 910
BstDSI	CCRYGG	1 cut(s)	857
BstEII	GGTNACC	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	880
BstFNI	CGCG	2 cut(s)	221, 859
BstKTI	GATC	6 cut(s)	33, 515, 610, 691, 760, 802
BstMBI	GATC	6 cut(s)	30, 512, 607, 688, 757, 799
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 657, 666
BstNI	CCWGG	8 cut(s)	618, 624, 720, 729, 786, 825, 867, 890
BstNSI	RCATGY	1 cut(s)	673
BstPI	GGTNACC	1 cut(s)	353
BstSLI	GKGCMC	1 cut(s)	793
BstUI	CGCG	2 cut(s)	221, 859
BstV1I	GCAGC	1 cut(s)	50
BstV2I	GAAGAC	1 cut(s)	453
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	6 cut(s)	46, 132, 622, 769, 810, 865
BtgI	CCRYGG	1 cut(s)	857
BtsCI	GGATG	1 cut(s)	880
BtsI	GCAGTG	2 cut(s)	33, 667
BtsIMutI	CAGTG	4 cut(s)	33, 200, 472, 667
Cac8I	GCNNGC	4 cut(s)	7, 130, 671, 771
Cfr13I	GGNCC	6 cut(s)	131, 190, 536, 620, 680, 809
Cfr42I	CCGCGG	1 cut(s)	860
CsiI	ACCWGGT	1 cut(s)	784
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	2 cut(s)	359, 670
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	324, 910
DpnI	GATC	6 cut(s)	32, 514, 609, 690, 759, 801
DpnII	GATC	6 cut(s)	30, 512, 607, 688, 757, 799
DraIII	CACNNNGTG	1 cut(s)	788
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1104I	CTCTTC	2 cut(s)	166, 416
EarI	CTCTTC	2 cut(s)	166, 416
Eco24I	GRGCYC	1 cut(s)	330
Eco47I	GGWCC	3 cut(s)	190, 536, 680
Eco57I	CTGAAG	1 cut(s)	546
Eco91I	GGTNACC	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	680
EcoO65I	GGTNACC	1 cut(s)	353
EcoRII	CCWGG	8 cut(s)	616, 622, 718, 727, 784, 823, 865, 888
EcoT38I	GRGCYC	1 cut(s)	330
FaeI	CATG	2 cut(s)	362, 673
FaiI	YATR	8 cut(s)	188, 231, 360, 534, 671, 765, 805, 807
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	889
FatI	CATG	2 cut(s)	358, 669
FauI	CCCGC	2 cut(s)	766, 866
FauNDI	CATATG	1 cut(s)	805
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	39, 126
FokI	GGATG	1 cut(s)	867
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	2 cut(s)	39, 126
FspBI	CTAG	3 cut(s)	480, 645, 677
GluI	GCNGC	2 cut(s)	39, 126
GsuI	CTGGAG	1 cut(s)	911
HaeIII	GGCC	6 cut(s)	46, 132, 622, 769, 810, 865
HapII	CCGG	3 cut(s)	108, 740, 815
Hin1II	CATG	2 cut(s)	362, 673
HinfI	GANTC	4 cut(s)	149, 424, 853, 877
HpaII	CCGG	3 cut(s)	108, 740, 815
HphI	GGTGA	4 cut(s)	31, 112, 365, 430
Hpy166II	GTNNAC	2 cut(s)	88, 235
Hpy188I	TCNGA	5 cut(s)	35, 148, 325, 499, 913
Hpy188III	TCNNGA	5 cut(s)	338, 400, 428, 564, 884
Hpy8I	GTNNAC	2 cut(s)	88, 235
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	5 cut(s)	106, 177, 498, 549, 570
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4IV	ACGT	2 cut(s)	114, 348
HpyCH4V	TGCA	1 cut(s)	848
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 657, 666
HpyF3I	CTNAG	2 cut(s)	324, 910
HpySE526I	ACGT	2 cut(s)	114, 348
Hsp92II	CATG	2 cut(s)	362, 673
Ksp22I	TGATCA	1 cut(s)	30
KspI	CCGCGG	1 cut(s)	860
Kzo9I	GATC	6 cut(s)	30, 512, 607, 688, 757, 799
LmnI	GCTCC	3 cut(s)	551, 870, 892
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	1 cut(s)	292
MabI	ACCWGGT	1 cut(s)	784
MaeI	CTAG	3 cut(s)	480, 645, 677
MaeII	ACGT	2 cut(s)	114, 348
MaeIII	GTNAC	2 cut(s)	353, 482
MalI	GATC	6 cut(s)	32, 514, 609, 690, 759, 801
MbiI	CCGCTC	1 cut(s)	873
MboI	GATC	6 cut(s)	30, 512, 607, 688, 757, 799
MboII	GAAGA	5 cut(s)	153, 433, 453, 602, 605
MhlI	GDGCHC	3 cut(s)	120, 330, 793
MluCI	AATT	4 cut(s)	290, 382, 403, 449
MluI	ACGCGT	1 cut(s)	219
MlyI	GAGTC	2 cut(s)	433, 871
MmeI	TCCRAC	2 cut(s)	343, 691
MseI	TTAA	2 cut(s)	267, 585
MspA1I	CMGCKG	3 cut(s)	128, 773, 859
MspI	CCGG	3 cut(s)	108, 740, 815
MvaI	CCWGG	8 cut(s)	618, 624, 720, 729, 786, 825, 867, 890
MvnI	CGCG	2 cut(s)	221, 859
MwoI	GCNNNNNNNGC	3 cut(s)	89, 657, 666
NciI	CCSGG	2 cut(s)	741, 816
NdeI	CATATG	1 cut(s)	805
NdeII	GATC	6 cut(s)	30, 512, 607, 688, 757, 799
NlaIII	CATG	2 cut(s)	362, 673
NlaIV	GGNNCC	4 cut(s)	133, 547, 682, 790
NmuCI	GTSAC	1 cut(s)	353
NspI	RCATGY	1 cut(s)	673
NspV	TTCGAA	1 cut(s)	251
PaeI	GCATGC	1 cut(s)	673
PcsI	WCGNNNNNNNCGW	3 cut(s)	72, 81, 207
PfeI	GAWTC	2 cut(s)	149, 853
PflFI	GACNNNGTC	1 cut(s)	71
PfoI	TCCNGGA	2 cut(s)	727, 814
PkrI	GCNGC	2 cut(s)	40, 127
PleI	GAGTC	2 cut(s)	432, 871
PpsI	GAGTC	2 cut(s)	432, 871
Ppu21I	YACGTR	1 cut(s)	115
PpuMI	RGGWCCY	1 cut(s)	680
PshBI	ATTAAT	1 cut(s)	585
Psp1406I	AACGTT	1 cut(s)	348
Psp5II	RGGWCCY	1 cut(s)	680
Psp6I	CCWGG	8 cut(s)	616, 622, 718, 727, 784, 823, 865, 888
PspEI	GGTNACC	1 cut(s)	353
PspGI	CCWGG	8 cut(s)	616, 622, 718, 727, 784, 823, 865, 888
PspN4I	GGNNCC	4 cut(s)	133, 547, 682, 790
PspPI	GGNCC	6 cut(s)	131, 190, 536, 620, 680, 809
PspPPI	RGGWCCY	1 cut(s)	680
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SacII	CCGCGG	1 cut(s)	860
SaqAI	TTAA	2 cut(s)	267, 585
SatI	GCNGC	2 cut(s)	39, 126
Sau3AI	GATC	6 cut(s)	30, 512, 607, 688, 757, 799
Sau96I	GGNCC	6 cut(s)	131, 190, 536, 620, 680, 809
SchI	GAGTC	2 cut(s)	433, 871
SduI	GDGCHC	3 cut(s)	120, 330, 793
SetI	ASST	9 cut(s)	75, 117, 207, 261, 351, 541, 556, 790, 891
SexAI	ACCWGGT	1 cut(s)	784
SfaNI	GCATC	1 cut(s)	292
Sfr303I	CCGCGG	1 cut(s)	860
SfuI	TTCGAA	1 cut(s)	251
SgrBI	CCGCGG	1 cut(s)	860
SinI	GGWCC	3 cut(s)	190, 536, 680
SphI	GCATGC	1 cut(s)	673
Sse9I	AATT	4 cut(s)	290, 382, 403, 449
SsiI	CCGC	7 cut(s)	123, 126, 651, 773, 857, 859, 873
SspMI	CTAG	3 cut(s)	480, 645, 677
TaaI	ACNGT	1 cut(s)	396
TaiI	ACGT	2 cut(s)	117, 351
TaqI	TCGA	2 cut(s)	170, 251
TasI	AATT	4 cut(s)	290, 382, 403, 449
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	2 cut(s)	149, 853
Tru1I	TTAA	2 cut(s)	267, 585
Tru9I	TTAA	2 cut(s)	267, 585
TscAI	CASTG	4 cut(s)	33, 200, 472, 667
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	3 cut(s)	192, 296, 907
TspRI	CASTG	4 cut(s)	33, 200, 472, 667
Tth111I	GACNNNGTC	1 cut(s)	71
VpaK11BI	GGWCC	3 cut(s)	190, 536, 680
VspI	ATTAAT	1 cut(s)	585
XapI	RAATTY	1 cut(s)	403
XceI	RCATGY	1 cut(s)	673
XspI	CTAG	3 cut(s)	480, 645, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.