Rw3G011130

Proteasome

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
10791267 .. 10793583
2317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G011130.1

Sequence Viewer

Length: 912 bp
ATGGCGAACGACAAGTCGGTCATGGCGGTCATCCGAGCCGCACGCCCATCTTTCCGCAACGAAAACGACAAGGTCGCCTTTGCCGTTCACGCTTCCTTCGCCGCCTCCGGCTACGAGTTAATCGCCGCCGGCCGCCCTGCTTTTTCCGAAAACGCCTCTCCTCTTCTGCAACTGGAAGTGGGTATTGAGAAATGGAACGAGCTGGAGAACGAGTACGCGTTCGTGTATTTGAACCGGGAAAAGGGTTCGAAGAAGGTTCTGGTGAAGTGTCTTGTGATTGATGGAACATTGAGTGTAGATGCTCTGGCTGATGGGGCTTCTCAGAACGTTCACTGTGAATTTGATGTTGGTGATTATGTGCAAGAAAATGAGGGCGGTAATTACTCATCACAGTTTAAGAACTTGGACACCCTAGTGAAGAATCTCAACGCTCAAGTTTTGTCGAAATTGGAGGAGTCTTCCACACCCAAGCCAACAAGAGTTGGATATCGACCTGGGCCTGGTGCTCGAAGGTATCCAGGTGGTGGTGATGATCTTTATCCTGGGGCTGGCCCTGGAATGCATCCTAGGTATCCAGTGGGTGGTAGCGATCTTTATCCTGGACCTGGTGCTGGAATGCCTTCTAGGGGTGCTTTTGACGATGGAAGCATGTTTGTTGGACCCAATGATCGTAGATTTGGGGACGTTGGACAACCTGGGTTTCCGGGGTTTCCTGGAGGACTACCGGGTATTCGTGATCCTCGGTTTGGTGCTGAAAGACCAGATGGTGTTCCTCCAGGTGCTCGCTTTGATCCATATGGGCCGCCTGGGCTTCCTGATTTTGATCCGGATTTTGCAAGGCGCCCACAGGGGCCAGGAAGCAGGATCCACCCTGACTTGGAGCAACCGGGGAGTGGTTCGGACTATATCTAG

Protein Analysis

303

Amino Acids

32.36

Weight (kDa)

5.13

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI31_Prot_N PF11566 15 - 154 3.3e-23 PI31 proteasome regulator N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 840
AccB7I CCANNNNNTGG 2 cut(s) 524, 581
AccII CGCG 1 cut(s) 218
AccIII TCCGGA 1 cut(s) 826
AciI CCGC 8 cut(s) 26, 39, 55, 102, 126, 133, 375, 803
AclI AACGTT 1 cut(s) 327
AclWI GGATC 5 cut(s) 731, 785, 818, 859, 872
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 1 cut(s) 338
AcyI GRCGYC 1 cut(s) 841
AfaI GTAC 1 cut(s) 215
AflIII ACRYGT 1 cut(s) 216
AgsI TTSAA 1 cut(s) 232
AjuI GAANNNNNNNTTGG 2 cut(s) 330, 362
AleI CACNNNNGTG 1 cut(s) 413
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
Alw21I GWGCWC 2 cut(s) 508, 784
AlwI GGATC 5 cut(s) 731, 785, 818, 859, 872
Aor13HI TCCGGA 1 cut(s) 826
AoxI GGCC 5 cut(s) 130, 497, 550, 800, 851
ApoI RAATTY 1 cut(s) 338
ArsI GACNNNNNNTTYG 1 cut(s) 31
Asp700I GAANNNNTTC 1 cut(s) 619
AspA2I CCTAGG 1 cut(s) 566
AspLEI GCGC 1 cut(s) 843
AspS9I GGNCC 6 cut(s) 497, 551, 602, 659, 800, 851
AsuC2I CCSGG 4 cut(s) 236, 705, 726, 888
AsuHPI GGTGA 3 cut(s) 274, 362, 539
AsuII TTCGAA 1 cut(s) 248
AvaII GGWCC 2 cut(s) 602, 659
AvrII CCTAGG 1 cut(s) 566
BamHI GGATCC 1 cut(s) 864
BanI GGYRCC 1 cut(s) 840
BbsI GAAGAC 1 cut(s) 450
Bbv12I GWGCWC 2 cut(s) 508, 784
BccI CCATC 5 cut(s) 55, 275, 305, 635, 758
BceAI ACGGC 1 cut(s) 68
BciVI GTATCC 2 cut(s) 525, 582
BcnI CCSGG 4 cut(s) 236, 705, 726, 888
BfaI CTAG 4 cut(s) 413, 567, 624, 910
BfoI RGCGCY 1 cut(s) 844
BfuI GTATCC 2 cut(s) 525, 582
BglI GCCNNNNNGGC 1 cut(s) 808
BisI GCNGC 5 cut(s) 39, 102, 126, 133, 803
BlnI CCTAGG 1 cut(s) 566
BlsI GCNGC 5 cut(s) 40, 103, 127, 134, 804
Bme18I GGWCC 2 cut(s) 602, 659
BmgT120I GGNCC 6 cut(s) 497, 551, 602, 659, 800, 851
BmiI GGNNCC 4 cut(s) 661, 842, 852, 866
BmsI GCATC 2 cut(s) 289, 571
BpiI GAAGAC 1 cut(s) 450
BpmI CTGGAG 3 cut(s) 224, 735, 759
Bpu14I TTCGAA 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 417
BpuMI CCSGG 4 cut(s) 236, 705, 726, 888
BsaBI GATNNNNATC 3 cut(s) 537, 594, 822
BsaHI GRCGYC 1 cut(s) 841
BsaJI CCNNGG 9 cut(s) 494, 542, 553, 566, 695, 704, 740, 806, 887
BsaWI WCCGGW 1 cut(s) 826
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 2 cut(s) 177, 575
Bse8I GATNNNNATC 3 cut(s) 537, 594, 822
BseAI TCCGGA 1 cut(s) 826
BseDI CCNNGG 9 cut(s) 494, 542, 553, 566, 695, 704, 740, 806, 887
BseGI GGATG 2 cut(s) 30, 562
BseJI GATNNNNATC 3 cut(s) 537, 594, 822
BseMII CTCAG 1 cut(s) 335
BseNI ACTGG 2 cut(s) 177, 575
BseRI GAGGAG 2 cut(s) 150, 467
BseX3I CGGCCG 1 cut(s) 130
Bsh1236I CGCG 1 cut(s) 218
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 5 cut(s) 132, 499, 552, 802, 853
BshNI GGYRCC 1 cut(s) 840
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 2 cut(s) 508, 784
BsiSI CCGG 7 cut(s) 108, 129, 235, 704, 725, 827, 887
BslFI GGGAC 1 cut(s) 695
BsmFI GGGAC 1 cut(s) 695
BsmI GAATGC 2 cut(s) 564, 621
BsnI GGCC 5 cut(s) 132, 499, 552, 802, 853
Bsp119I TTCGAA 1 cut(s) 248
Bsp1286I GDGCHC 2 cut(s) 508, 784
Bsp13I TCCGGA 1 cut(s) 826
Bsp143I GATC 7 cut(s) 532, 589, 667, 736, 790, 823, 864
BspACI CCGC 8 cut(s) 26, 39, 55, 102, 126, 133, 375, 803
BspANI GGCC 5 cut(s) 132, 499, 552, 802, 853
BspCNI CTCAG 1 cut(s) 334
BspEI TCCGGA 1 cut(s) 826
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 4 cut(s) 661, 842, 852, 866
BspPI GGATC 5 cut(s) 731, 785, 818, 859, 872
BspT104I TTCGAA 1 cut(s) 248
BspT107I GGYRCC 1 cut(s) 840
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 2 cut(s) 177, 575
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 9 cut(s) 494, 542, 553, 566, 695, 704, 740, 806, 887
BssMI GATC 7 cut(s) 532, 589, 667, 736, 790, 823, 864
BssNI GRCGYC 1 cut(s) 841
BssT1I CCWWGG 1 cut(s) 566
Bst4CI ACNGT 2 cut(s) 335, 393
Bst6I CTCTTC 1 cut(s) 168
BstACI GRCGYC 1 cut(s) 841
BstBI TTCGAA 1 cut(s) 248
BstC8I GCNNGC 4 cut(s) 43, 130, 550, 784
BstDEI CTNAG 1 cut(s) 321
BstF5I GGATG 2 cut(s) 30, 562
BstFNI CGCG 1 cut(s) 218
BstH2I RGCGCY 1 cut(s) 844
BstHHI GCGC 1 cut(s) 843
BstKTI GATC 7 cut(s) 535, 592, 670, 739, 793, 826, 867
BstMBI GATC 7 cut(s) 532, 589, 667, 736, 790, 823, 864
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 4 cut(s) 89, 98, 314, 808
BstNSI RCATGY 1 cut(s) 652
BstUI CGCG 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 450
BstX2I RGATCY 1 cut(s) 864
BstYI RGATCY 1 cut(s) 864
BstZI CGGCCG 1 cut(s) 130
BsuI GTATCC 2 cut(s) 525, 582
BsuRI GGCC 5 cut(s) 132, 499, 552, 802, 853
BtsCI GGATG 2 cut(s) 30, 562
BtsIMutI CAGTG 2 cut(s) 331, 582
Cac8I GCNNGC 4 cut(s) 43, 130, 550, 784
CfoI GCGC 1 cut(s) 843
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 6 cut(s) 497, 551, 602, 659, 800, 851
CsiI ACCWGGT 1 cut(s) 604
Csp6I GTAC 1 cut(s) 214
CviAII CATG 2 cut(s) 22, 649
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 1 cut(s) 321
DinI GGCGCC 1 cut(s) 842
DpnI GATC 7 cut(s) 534, 591, 669, 738, 792, 825, 866
DpnII GATC 7 cut(s) 532, 589, 667, 736, 790, 823, 864
DrdI GACNNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 130
EagI CGGCCG 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
EclXI CGGCCG 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 566
Eco32I GATATC 1 cut(s) 488
Eco47I GGWCC 2 cut(s) 602, 659
Eco52I CGGCCG 1 cut(s) 130
EcoRV GATATC 1 cut(s) 488
EcoT14I CCWWGG 1 cut(s) 566
EcoT22I ATGCAT 1 cut(s) 564
EgeI GGCGCC 1 cut(s) 842
EheI GGCGCC 1 cut(s) 842
ErhI CCWWGG 1 cut(s) 566
FaeI CATG 2 cut(s) 25, 652
FaiI YATR 6 cut(s) 23, 357, 650, 796, 798, 906
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FaqI GGGAC 1 cut(s) 695
FatI CATG 2 cut(s) 21, 648
FauNDI CATATG 1 cut(s) 796
Fnu4HI GCNGC 5 cut(s) 39, 102, 126, 133, 803
FokI GGATG 2 cut(s) 17, 549
Fsp4HI GCNGC 5 cut(s) 39, 102, 126, 133, 803
FspBI CTAG 4 cut(s) 413, 567, 624, 910
GlaI GCGC 1 cut(s) 842
GluI GCNGC 5 cut(s) 39, 102, 126, 133, 803
GsuI CTGGAG 3 cut(s) 224, 735, 759
HaeII RGCGCY 1 cut(s) 844
HaeIII GGCC 5 cut(s) 132, 499, 552, 802, 853
HapII CCGG 7 cut(s) 108, 129, 235, 704, 725, 827, 887
HhaI GCGC 1 cut(s) 843
Hin1I GRCGYC 1 cut(s) 841
Hin1II CATG 2 cut(s) 25, 652
Hin6I GCGC 1 cut(s) 841
HinP1I GCGC 1 cut(s) 841
HinfI GANTC 2 cut(s) 421, 455
HpaII CCGG 7 cut(s) 108, 129, 235, 704, 725, 827, 887
HphI GGTGA 3 cut(s) 274, 362, 539
Hpy166II GTNNAC 2 cut(s) 88, 331
Hpy188I TCNGA 4 cut(s) 35, 148, 324, 901
Hpy188III TCNNGA 3 cut(s) 734, 815, 827
Hpy8I GTNNAC 2 cut(s) 88, 331
HpyAV CCTTC 4 cut(s) 106, 247, 504, 630
HpyCH4III ACNGT 2 cut(s) 335, 393
HpyCH4IV ACGT 2 cut(s) 327, 684
HpyCH4V TGCA 4 cut(s) 169, 361, 562, 836
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 98, 314, 808
HpyF3I CTNAG 1 cut(s) 321
HpySE526I ACGT 2 cut(s) 327, 684
Hsp92I GRCGYC 1 cut(s) 841
Hsp92II CATG 2 cut(s) 25, 652
HspAI GCGC 1 cut(s) 841
KasI GGCGCC 1 cut(s) 840
Kpn2I TCCGGA 1 cut(s) 826
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
Kzo9I GATC 7 cut(s) 532, 589, 667, 736, 790, 823, 864
LmnI GCTCC 1 cut(s) 880
LweI GCATC 2 cut(s) 289, 571
MabI ACCWGGT 1 cut(s) 604
MaeI CTAG 4 cut(s) 413, 567, 624, 910
MaeII ACGT 2 cut(s) 327, 684
MalI GATC 7 cut(s) 534, 591, 669, 738, 792, 825, 866
MboI GATC 7 cut(s) 532, 589, 667, 736, 790, 823, 864
MboII GAAGA 4 cut(s) 155, 262, 430, 450
MflI RGATCY 1 cut(s) 864
MhlI GDGCHC 2 cut(s) 508, 784
MluCI AATT 3 cut(s) 338, 379, 446
MluI ACGCGT 1 cut(s) 216
Mly113I GGCGCC 1 cut(s) 841
MlyI GAGTC 1 cut(s) 464
MmeI TCCRAC 3 cut(s) 463, 637, 667
MnlI CCTC 8 cut(s) 115, 166, 171, 364, 445, 710, 750, 783
Mph1103I ATGCAT 1 cut(s) 564
MroI TCCGGA 1 cut(s) 826
MroNI GCCGGC 1 cut(s) 128
MroXI GAANNNNTTC 1 cut(s) 619
MseI TTAA 2 cut(s) 119, 396
MslI CAYNNNNRTG 1 cut(s) 413
MspI CCGG 7 cut(s) 108, 129, 235, 704, 725, 827, 887
Mva1269I GAATGC 2 cut(s) 564, 621
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 4 cut(s) 89, 98, 314, 808
NaeI GCCGGC 1 cut(s) 130
NarI GGCGCC 1 cut(s) 841
NciI CCSGG 4 cut(s) 236, 705, 726, 888
NdeI CATATG 1 cut(s) 796
NdeII GATC 7 cut(s) 532, 589, 667, 736, 790, 823, 864
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 2 cut(s) 25, 652
NlaIV GGNNCC 4 cut(s) 661, 842, 852, 866
NsiI ATGCAT 1 cut(s) 564
NspI RCATGY 1 cut(s) 652
NspV TTCGAA 1 cut(s) 248
OliI CACNNNNGTG 1 cut(s) 413
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 2 cut(s) 564, 621
PdiI GCCGGC 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 619
PfeI GAWTC 1 cut(s) 421
PflFI GACNNNGTC 1 cut(s) 71
PflMI CCANNNNNTGG 2 cut(s) 524, 581
PfoI TCCNGGA 2 cut(s) 598, 712
PkrI GCNGC 5 cut(s) 40, 103, 127, 134, 804
PleI GAGTC 1 cut(s) 463
PluTI GGCGCC 1 cut(s) 844
PpsI GAGTC 1 cut(s) 463
Psp1406I AACGTT 1 cut(s) 327
PspN4I GGNNCC 4 cut(s) 661, 842, 852, 866
PspPI GGNCC 6 cut(s) 497, 551, 602, 659, 800, 851
PsuI RGATCY 1 cut(s) 864
PsyI GACNNNGTC 1 cut(s) 71
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 413
SaqAI TTAA 2 cut(s) 119, 396
SatI GCNGC 5 cut(s) 39, 102, 126, 133, 803
Sau3AI GATC 7 cut(s) 532, 589, 667, 736, 790, 823, 864
Sau96I GGNCC 6 cut(s) 497, 551, 602, 659, 800, 851
SchI GAGTC 1 cut(s) 464
SduI GDGCHC 2 cut(s) 508, 784
SexAI ACCWGGT 1 cut(s) 604
SfaNI GCATC 2 cut(s) 289, 571
SfoI GGCGCC 1 cut(s) 842
SfuI TTCGAA 1 cut(s) 248
SinI GGWCC 2 cut(s) 602, 659
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 1 cut(s) 432
SmoI CTYRAG 1 cut(s) 432
Sse9I AATT 3 cut(s) 338, 379, 446
SsiI CCGC 8 cut(s) 26, 39, 55, 102, 126, 133, 375, 803
SspDI GGCGCC 1 cut(s) 840
SspMI CTAG 4 cut(s) 413, 567, 624, 910
StyI CCWWGG 1 cut(s) 566
TaaI ACNGT 2 cut(s) 335, 393
TaiI ACGT 2 cut(s) 330, 687
TaqI TCGA 4 cut(s) 248, 443, 490, 508
TaqII GACCGA 1 cut(s) 7
TasI AATT 3 cut(s) 338, 379, 446
TauI GCSGC 5 cut(s) 41, 104, 128, 135, 805
TfiI GAWTC 1 cut(s) 421
Tru1I TTAA 2 cut(s) 119, 396
Tru9I TTAA 2 cut(s) 119, 396
TscAI CASTG 2 cut(s) 338, 582
TspRI CASTG 2 cut(s) 338, 582
Tth111I GACNNNGTC 1 cut(s) 71
Van91I CCANNNNNTGG 2 cut(s) 524, 581
VpaK11BI GGWCC 2 cut(s) 602, 659
XapI RAATTY 1 cut(s) 338
XceI RCATGY 1 cut(s) 652
XmaJI CCTAGG 1 cut(s) 566
XmnI GAANNNNTTC 1 cut(s) 619
XspI CTAG 4 cut(s) 413, 567, 624, 910
Zsp2I ATGCAT 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.