Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Reverse (-)

14450024 .. 14453709

Gene Structure 3686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCGCCTGGTGTCTCTGTAGACGAAGTAGGAATTGACGGATGGAACGAGCTGGACGACGAGTACGCTTTCGTCTACGCCAACTCAGAAAGGAACAAGTTGCTCGTGAAATGCCTTGTCATCAATGATAAGTTGTTCGTCGATGCTTTGGCTTCTGGCTCTTCCTTCCATCTCGAAATCAGCGTGGGTGACTATGTTGGAGAGAGCGGTGGCAGCGGTAATTACTCGTCGCAGTTCAAGAATTTGGAGGTACTGGTGAAGAGTCTGGACGCTCAAGTTTTGTCTAAATTAGATGGCTCTTTAAAAGCCGGTTCGAGCAGTAACAAAGCCACAAGTTCGGAAACAAGTGAGAGACCAGCAACTGAGCCACGGAGTGGACTTTCAGAACCTCTTCCTTCCAGAATTGTCTATCCTCCTGTTAATCCTATAGGTGATAGTGATCGTTTCCCTGGGCCTGGTGCTGGAATGTATCCTACTAGAGGTGATTTTGGTGGTGGGGGAATGCTTCTAGGACCAAATGATCCTCGGTGGTTTGGTGGCATTAGAGAGCCTGGGTTTCCTGGAGGACAACCGGGTGTTCCTCCTGGTGCTCGTTTTGACCCCTTTGGTCCACCTGGTGTTCCTGGTTTTGAGCCCAATAGGTTTGCAAGGAATCTGCGGAGGCCAGGGAGTGGCCCTCATCCAGATTTGGAACATTTTGGGAGTGGTTCTGATTTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

241

Amino Acids

25.31

Weight (kDa)

4.85

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI31_Prot_N	PF11566	12 - 102	2.5e-12	PI31 proteasome regulator N-terminal
PI31_Prot_C	PF08577	143 - 204	2.6e-06	PI31 proteasome regulator

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	2 cut(s)	374, 671
AccBSI	CCGCTC	1 cut(s)	207
AccI	GTMKAC	2 cut(s)	21, 75
AciI	CCGC	3 cut(s)	207, 216, 658
AclWI	GGATC	1 cut(s)	515
AcsI	RAATTY	1 cut(s)	241
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	2 cut(s)	374, 617
AfaI	GTAC	2 cut(s)	65, 252
AfiI	CCNNNNNNNGG	5 cut(s)	374, 455, 461, 479, 671
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	9 cut(s)	7, 448, 454, 550, 559, 583, 613, 622, 664
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
Alw21I	GWGCWC	1 cut(s)	592
Alw26I	GTCTC	2 cut(s)	19, 346
AlwI	GGATC	1 cut(s)	515
AlwNI	CAGNNNCTG	1 cut(s)	362
AoxI	GGCC	3 cut(s)	452, 662, 673
ApeKI	GCWGC	1 cut(s)	213
ApoI	RAATTY	1 cut(s)	241
Asp700I	GAANNNNTTC	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	4 cut(s)	452, 512, 608, 674
AsuC2I	CCSGG	1 cut(s)	573
AsuHPI	GGTGA	4 cut(s)	200, 268, 443, 494
AvaII	GGWCC	2 cut(s)	512, 608
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	636
BauI	CACGAG	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	592
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	3 cut(s)	36, 177, 287
BciT130I	CCWGG	9 cut(s)	9, 450, 456, 552, 561, 585, 615, 624, 666
BciVI	GTATCC	1 cut(s)	480
BcnI	CCSGG	1 cut(s)	573
BcoDI	GTCTC	2 cut(s)	19, 346
BfaI	CTAG	2 cut(s)	477, 509
BfmI	CTRYAG	2 cut(s)	18, 426
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	480
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
Bme18I	GGWCC	2 cut(s)	512, 608
BmgT120I	GGNCC	4 cut(s)	452, 512, 608, 674
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	133
BplI	GAGNNNNNCTC	2 cut(s)	661, 693
BpmI	CTGGAG	1 cut(s)	582
BpuEI	CTTGAG	1 cut(s)	258
BpuMI	CCSGG	1 cut(s)	573
BsaBI	GATNNNNATC	1 cut(s)	438
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	346
BsaJI	CCNNGG	6 cut(s)	368, 448, 449, 524, 551, 665
Bsc4I	CCNNNNNNNGG	5 cut(s)	374, 455, 461, 479, 671
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	438
BseBI	CCWGG	9 cut(s)	9, 450, 456, 552, 561, 585, 615, 624, 666
BseDI	CCNNGG	6 cut(s)	368, 448, 449, 524, 551, 665
BseGI	GGATG	2 cut(s)	47, 679
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	5 cut(s)	374, 455, 461, 479, 671
BseMII	CTCAG	2 cut(s)	99, 354
BseNI	ACTGG	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	225
BshFI	GGCC	3 cut(s)	454, 664, 675
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	592
BsiSI	CCGG	2 cut(s)	309, 572
BslI	CCNNNNNNNGG	5 cut(s)	374, 455, 461, 479, 671
BsmAI	GTCTC	2 cut(s)	19, 346
BsmI	GAATGC	1 cut(s)	507
BsnI	GGCC	3 cut(s)	454, 664, 675
Bso31I	GGTCTC	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	592, 636
Bsp143I	GATC	2 cut(s)	439, 520
BspACI	CCGC	3 cut(s)	207, 216, 658
BspANI	GGCC	3 cut(s)	454, 664, 675
BspCNI	CTCAG	2 cut(s)	98, 355
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	515
BspQI	GCTCTTC	1 cut(s)	166
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	346
BsrBI	CCGCTC	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	258
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	6 cut(s)	368, 448, 449, 524, 551, 665
BssMI	GATC	2 cut(s)	439, 520
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	104
Bst2BI	CACGAG	1 cut(s)	104
Bst2UI	CCWGG	9 cut(s)	9, 450, 456, 552, 561, 585, 615, 624, 666
Bst6I	CTCTTC	3 cut(s)	166, 254, 396
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	2 cut(s)	85, 363
BstDSI	CCRYGG	1 cut(s)	368
BstENI	CCTNNNNNAGG	1 cut(s)	477
BstF5I	GGATG	2 cut(s)	47, 679
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	442, 523
BstMAI	GTCTC	2 cut(s)	19, 346
BstMBI	GATC	2 cut(s)	439, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstNI	CCWGG	9 cut(s)	9, 450, 456, 552, 561, 585, 615, 624, 666
BstSFI	CTRYAG	2 cut(s)	18, 426
BstV1I	GCAGC	1 cut(s)	225
BsuI	GTATCC	1 cut(s)	480
BsuRI	GGCC	3 cut(s)	454, 664, 675
BtgI	CCRYGG	1 cut(s)	368
BtsCI	GGATG	2 cut(s)	47, 679
CaiI	CAGNNNCTG	1 cut(s)	362
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	4 cut(s)	452, 512, 608, 674
CseI	GACGC	1 cut(s)	278
CsiI	ACCWGGT	1 cut(s)	613
Csp6I	GTAC	2 cut(s)	64, 251
CviQI	GTAC	2 cut(s)	64, 251
DdeI	CTNAG	2 cut(s)	85, 363
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	441, 522
DpnII	GATC	2 cut(s)	439, 520
DraI	TTTAAA	1 cut(s)	303
DraIII	CACNNNGTG	2 cut(s)	374, 617
Eam1104I	CTCTTC	3 cut(s)	166, 254, 396
EarI	CTCTTC	3 cut(s)	166, 254, 396
Eco24I	GRGCYC	1 cut(s)	636
Eco31I	GGTCTC	1 cut(s)	346
Eco47I	GGWCC	2 cut(s)	512, 608
EcoNI	CCTNNNNNAGG	1 cut(s)	477
EcoRII	CCWGG	9 cut(s)	7, 448, 454, 550, 559, 583, 613, 622, 664
EcoT38I	GRGCYC	1 cut(s)	636
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaiI	YATR	2 cut(s)	195, 428
FblI	GTMKAC	2 cut(s)	21, 75
Fnu4HI	GCNGC	1 cut(s)	214
FokI	GGATG	2 cut(s)	54, 666
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	1 cut(s)	214
FspBI	CTAG	2 cut(s)	477, 509
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	214
GsuI	CTGGAG	1 cut(s)	582
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	454, 664, 675
HapII	CCGG	2 cut(s)	309, 572
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	262, 652
HpaII	CCGG	2 cut(s)	309, 572
HphI	GGTGA	4 cut(s)	200, 268, 443, 494
Hpy166II	GTNNAC	4 cut(s)	22, 76, 377, 611
Hpy188I	TCNGA	4 cut(s)	88, 340, 385, 712
Hpy188III	TCNNGA	6 cut(s)	106, 173, 238, 266, 399, 683
Hpy8I	GTNNAC	4 cut(s)	22, 76, 377, 611
Hpy99I	CGWCG	3 cut(s)	62, 143, 232
HpyAV	CCTTC	2 cut(s)	175, 405
HpyCH4V	TGCA	1 cut(s)	647
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpyF3I	CTNAG	2 cut(s)	85, 363
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	2 cut(s)	439, 520
LguI	GCTCTTC	1 cut(s)	166
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	1 cut(s)	133
MabI	ACCWGGT	1 cut(s)	613
MaeI	CTAG	2 cut(s)	477, 509
MaeIII	GTNAC	2 cut(s)	188, 320
MalI	GATC	2 cut(s)	441, 522
MbiI	CCGCTC	1 cut(s)	207
MboI	GATC	2 cut(s)	439, 520
MboII	GAAGA	3 cut(s)	153, 271, 383
MhlI	GDGCHC	2 cut(s)	592, 636
MluCI	AATT	5 cut(s)	33, 220, 241, 287, 402
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	9 cut(s)	241, 399, 423, 473, 534, 557, 591, 654, 687
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	2 cut(s)	302, 420
MspA1I	CMGCKG	1 cut(s)	216
MspI	CCGG	2 cut(s)	309, 572
Mva1269I	GAATGC	1 cut(s)	507
MvaI	CCWGG	9 cut(s)	9, 450, 456, 552, 561, 585, 615, 624, 666
MwoI	GCNNNNNNNGC	1 cut(s)	213
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	573
NdeII	GATC	2 cut(s)	439, 520
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	188
PasI	CCCWGGG	1 cut(s)	449
PciSI	GCTCTTC	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	3 cut(s)	45, 54, 180
PctI	GAATGC	1 cut(s)	507
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	652
PflMI	CCANNNNNTGG	2 cut(s)	374, 671
PfoI	TCCNGGA	1 cut(s)	559
PkrI	GCNGC	1 cut(s)	215
PleI	GAGTC	1 cut(s)	270
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	270
Psp6I	CCWGG	9 cut(s)	7, 448, 454, 550, 559, 583, 613, 622, 664
PspGI	CCWGG	9 cut(s)	7, 448, 454, 550, 559, 583, 613, 622, 664
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	4 cut(s)	452, 512, 608, 674
PstNI	CAGNNNCTG	1 cut(s)	362
RsaI	GTAC	2 cut(s)	65, 252
RsaNI	GTAC	2 cut(s)	64, 251
SapI	GCTCTTC	1 cut(s)	166
SaqAI	TTAA	2 cut(s)	302, 420
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	2 cut(s)	439, 520
Sau96I	GGNCC	4 cut(s)	452, 512, 608, 674
SchI	GAGTC	1 cut(s)	271
SduI	GDGCHC	2 cut(s)	592, 636
SetI	ASST	7 cut(s)	54, 252, 391, 433, 484, 616, 644
SexAI	ACCWGGT	1 cut(s)	613
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	2 cut(s)	18, 426
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	2 cut(s)	512, 608
SmlI	CTYRAG	1 cut(s)	273
SmoI	CTYRAG	1 cut(s)	273
Sse9I	AATT	5 cut(s)	33, 220, 241, 287, 402
SsiI	CCGC	3 cut(s)	207, 216, 658
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	477, 509
TaqI	TCGA	3 cut(s)	141, 174, 314
TasI	AATT	5 cut(s)	33, 220, 241, 287, 402
TfiI	GAWTC	1 cut(s)	652
Tru1I	TTAA	2 cut(s)	302, 420
Tru9I	TTAA	2 cut(s)	302, 420
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	1 cut(s)	213
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	706
TspGWI	ACGGA	2 cut(s)	54, 385
Van91I	CCANNNNNTGG	2 cut(s)	374, 671
VpaK11BI	GGWCC	2 cut(s)	512, 608
XagI	CCTNNNNNAGG	1 cut(s)	477
XapI	RAATTY	1 cut(s)	241
XmiI	GTMKAC	2 cut(s)	21, 75
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	2 cut(s)	477, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.