Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Reverse (-)

49824298 .. 49824777

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00034330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGACAAGTCGGTCATGGCGGTCATCAGAGCCACTCGCCCATCTTTCCGCAACGAAAACGACAAGGTTTTTATTATTTGGGGGTTTTGTAGAAGAAGTGGGTATTGAGAAATGGAACGAGCTGGAGAACGAGTATGCGTTTGTGCATTTGAACCCAGAAAAGGGTTCGAAGAAGGTTTTGGTGAAGTGTCTTGTGATTGATGGAACATTGAGCTTAGATGCTCTGGCTGAGGGGGCTTCTCAGAACGTTCACTGTGAATTCAAGGTTAGTGATTATGTGCAAGAAAATGAGGGCAGTAATTACTCACCACAGTTTAAGAACTTAGATATCACTCTGTTAGTGAGAGTGATATGGAAGTTGGTGGCTTGGGTGAGACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

126

Amino Acids

14.3

Weight (kDa)

5.91

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI31_Prot_N	PF11566	34 - 97	2.2e-09	PI31 proteasome regulator N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
AciI	CCGC	2 cut(s)	19, 48
AclI	AACGTT	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	257
AfiI	CCNNNNNNNGG	2 cut(s)	160, 161
AgsI	TTSAA	2 cut(s)	151, 262
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	2 cut(s)	121, 213
AluI	AGCT	2 cut(s)	121, 213
Alw26I	GTCTC	1 cut(s)	367
ApoI	RAATTY	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	193, 297
AsuII	TTCGAA	1 cut(s)	167
BbvCI	CCTCAGC	1 cut(s)	228
BccI	CCATC	2 cut(s)	48, 194
BcoDI	GTCTC	1 cut(s)	367
BmsI	GCATC	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	143
Bpu10I	CCTNAGC	1 cut(s)	228
Bpu14I	TTCGAA	1 cut(s)	167
BsaI	GGTCTC	1 cut(s)	367
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 161
BseLI	CCNNNNNNNGG	2 cut(s)	160, 161
BseMII	CTCAG	2 cut(s)	219, 254
BslI	CCNNNNNNNGG	2 cut(s)	160, 161
BsmAI	GTCTC	1 cut(s)	367
Bso31I	GGTCTC	1 cut(s)	367
Bsp119I	TTCGAA	1 cut(s)	167
BspACI	CCGC	2 cut(s)	19, 48
BspCNI	CTCAG	2 cut(s)	220, 253
BspT104I	TTCGAA	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	367
Bst4CI	ACNGT	2 cut(s)	254, 312
BstBI	TTCGAA	1 cut(s)	167
BstDEI	CTNAG	4 cut(s)	214, 228, 240, 322
BstMAI	GTCTC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BtsIMutI	CAGTG	1 cut(s)	250
CviAII	CATG	1 cut(s)	15
CviJI	RGCY	6 cut(s)	31, 121, 213, 227, 236, 365
CviKI_1	RGCY	6 cut(s)	31, 121, 213, 227, 236, 365
DdeI	CTNAG	4 cut(s)	214, 228, 240, 322
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	367
Eco32I	GATATC	1 cut(s)	328
EcoRI	GAATTC	1 cut(s)	257
EcoRV	GATATC	1 cut(s)	328
FaeI	CATG	1 cut(s)	18
FaiI	YATR	4 cut(s)	16, 135, 276, 352
FatI	CATG	1 cut(s)	14
GsuI	CTGGAG	1 cut(s)	143
Hin1II	CATG	1 cut(s)	18
HphI	GGTGA	2 cut(s)	193, 297
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	28, 243
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	2 cut(s)	254, 312
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	2 cut(s)	145, 280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	4 cut(s)	214, 228, 240, 322
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	18
LpnPI	CCDG	3 cut(s)	107, 168, 209
LweI	GCATC	1 cut(s)	208
MaeII	ACGT	1 cut(s)	246
MboII	GAAGA	2 cut(s)	104, 181
MluCI	AATT	2 cut(s)	257, 298
MnlI	CCTC	2 cut(s)	223, 283
MseI	TTAA	1 cut(s)	315
MwoI	GCNNNNNNNGC	1 cut(s)	233
NlaIII	CATG	1 cut(s)	18
NspV	TTCGAA	1 cut(s)	167
Psp1406I	AACGTT	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	315
SetI	ASST	6 cut(s)	68, 123, 177, 215, 249, 267
SfaNI	GCATC	1 cut(s)	208
SfuI	TTCGAA	1 cut(s)	167
Sse9I	AATT	2 cut(s)	257, 298
SsiI	CCGC	2 cut(s)	19, 48
TaaI	ACNGT	2 cut(s)	254, 312
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	1 cut(s)	167
TasI	AATT	2 cut(s)	257, 298
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	257
TspRI	CASTG	1 cut(s)	257
XapI	RAATTY	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.