RchiOBHm_Chr6g0273171

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001218
Physical Location & Seq
Forward (+)
33823853 .. 33824092
240 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24507

Sequence Viewer

Length: 153 bp
ATGTCACTCTTGGACCTGCTGTCCGTGATGGTGAGTATGTACGTTTTTGGTGTTGCTCACATCTTTGCCTCGTTCAATGGTACCTTCATTTGTTTGGATGGTTGGTACATCTCTATTTGCAGCTTCCTCCTTGTTGGAAAGAGAAGGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

5.65

Weight (kDa)

7.82

Isoelectric Point (pI)

52.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 24
Acc65I GGTACC 1 cut(s) 80
AccB1I GGYRCC 1 cut(s) 80
AfaI GTAC 3 cut(s) 41, 82, 107
AgsI TTSAA 1 cut(s) 76
AhdI GACNNNNNGTC 1 cut(s) 19
AluBI AGCT 1 cut(s) 123
AluI AGCT 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 120
Asp718I GGTACC 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 43
AvaII GGWCC 1 cut(s) 13
BanI GGYRCC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 132
BccI CCATC 2 cut(s) 22, 92
BfuAI ACCTGC 1 cut(s) 24
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
Bme18I GGWCC 1 cut(s) 13
BmeRI GACNNNNNGTC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 82
BseGI GGATG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 132
BshNI GGYRCC 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 82
BspMI ACCTGC 1 cut(s) 24
BspT107I GGYRCC 1 cut(s) 80
BstF5I GGATG 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 132
BtsCI GGATG 1 cut(s) 103
BveI ACCTGC 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 13
Csp6I GTAC 3 cut(s) 40, 81, 106
CviJI RGCY 1 cut(s) 123
CviKI_1 RGCY 1 cut(s) 123
CviQI GTAC 3 cut(s) 40, 81, 106
DriI GACNNNNNGTC 1 cut(s) 19
Eam1105I GACNNNNNGTC 1 cut(s) 19
Eco47I GGWCC 1 cut(s) 13
FaiI YATR 1 cut(s) 38
Fnu4HI GCNGC 1 cut(s) 121
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 121
GluI GCNGC 1 cut(s) 121
HphI GGTGA 1 cut(s) 43
HpyAV CCTTC 2 cut(s) 94, 138
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 1 cut(s) 120
HpySE526I ACGT 1 cut(s) 42
KpnI GGTACC 1 cut(s) 84
LpnPI CCDG 1 cut(s) 29
Lsp1109I GCAGC 1 cut(s) 132
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 3
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 2 cut(s) 79, 137
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 3
PkrI GCNGC 1 cut(s) 122
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 13
RsaI GTAC 3 cut(s) 41, 82, 107
RsaNI GTAC 3 cut(s) 40, 81, 106
SatI GCNGC 1 cut(s) 121
Sau96I GGNCC 1 cut(s) 13
SetI ASST 4 cut(s) 18, 45, 86, 125
SgeI CNNG 5 cut(s) 22, 28, 37, 82, 143
SinI GGWCC 1 cut(s) 13
TaiI ACGT 1 cut(s) 45
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 120
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 76
TspGWI ACGGA 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.