Rh3BG135900

Proteasome

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
11505829 .. 11508148
2320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG135900.1

Sequence Viewer

Length: 915 bp
ATGGCGAACGACAAGTCGGTCATGGCGGTCATCCGAGCCGCACGCCCATCTTTCCGCAACGAAAACGACAAGGTCGCCTTTGCCGTTCACGCTTCCTTCGCCGCCTCCGGCTACGAGTTAATCGCCGCCGGCCGCCCTGCTTTTTCCGAAAACGCCCTCTCCTCTTCCGCAACTGAGGAAGTGGGTATTGAGAAATGGAACGAGCTGGAGAACGAGTACGCGTTCGTGTATTTGAACCGGGAAAAGGGTTCGAAGAAGGTTCTGGTGAAGTGTCTTGTGATTGATGGAACATTGAGTGTAGATGCTCTGGCTGATGGGGCTTCTCAGAACCTTCACTGTGAATTTGATGTTGGTGATTATGTGCAAGAAAATGAGGGCAGTAATTACTCATCACAGTTTAAGAACTTGGACACCCTAGTGAAGAATCTCAACGCTCAAGTTTTGTCGAAATTGGAGGAGTCTTCCACACCCAAGCCAACAAGAGTTGGATATCGACCTGGGCCTGGTGCTGGAAGGTATCCAGGTGGTGGTGATGATCTTTATCCTGGGGCTGGCGCTGGAATGTATCCTAGGTATCCAGTGGGTGGTAGCGATCTTTATCCTGGACCTGGTGCTGGAATGCCTTCTAGGGGTGCTTTTGACGATGGAAGCATGTTTGTTGGACCCAATGATCGTAGATTTGGGGACGTTGGACAACCTGGGTTTCCGGGGTTTCCTGGAGGACTACCGGGTATTCGTGATCCTCGGTTTGGTGCTGAAAGACCAGATGGTGTTCCTCCAGGTGCTCGCTTTGATCCATATGGGCCGCCTGGGCTTCCTGATTTTGATCCGGATTTTGCAAGGCGCCCACAGGGGCCAGGAAGCAGGATCCACCCTGACTTGGAGCAACCCGGGAGTGGTTCGGACTATATCTAG

Protein Analysis

304

Amino Acids

32.33

Weight (kDa)

4.91

Isoelectric Point (pI)

34.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI31_Prot_N PF11566 15 - 155 4.4e-24 PI31 proteasome regulator N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 843
AccB7I CCANNNNNTGG 2 cut(s) 527, 584
AccII CGCG 1 cut(s) 221
AccIII TCCGGA 1 cut(s) 829
AciI CCGC 8 cut(s) 26, 39, 55, 102, 126, 133, 168, 806
AclWI GGATC 5 cut(s) 734, 788, 821, 862, 875
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 1 cut(s) 341
AcyI GRCGYC 1 cut(s) 844
AfaI GTAC 1 cut(s) 218
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 1 cut(s) 235
AjuI GAANNNNNNNTTGG 2 cut(s) 333, 365
AleI CACNNNNGTG 1 cut(s) 416
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
Alw21I GWGCWC 1 cut(s) 787
AlwI GGATC 5 cut(s) 734, 788, 821, 862, 875
Ama87I CYCGRG 1 cut(s) 890
Aor13HI TCCGGA 1 cut(s) 829
AoxI GGCC 4 cut(s) 130, 500, 803, 854
ApoI RAATTY 1 cut(s) 341
ArsI GACNNNNNNTTYG 1 cut(s) 31
Asp700I GAANNNNTTC 1 cut(s) 622
AspA2I CCTAGG 1 cut(s) 569
AspLEI GCGC 2 cut(s) 557, 846
AspS9I GGNCC 5 cut(s) 500, 605, 662, 803, 854
AsuC2I CCSGG 5 cut(s) 239, 708, 729, 891, 892
AsuHPI GGTGA 3 cut(s) 277, 365, 542
AsuII TTCGAA 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 890
AvaII GGWCC 2 cut(s) 605, 662
AvrII CCTAGG 1 cut(s) 569
BamHI GGATCC 1 cut(s) 867
BanI GGYRCC 1 cut(s) 843
BbsI GAAGAC 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 787
BccI CCATC 5 cut(s) 55, 278, 308, 638, 761
BceAI ACGGC 1 cut(s) 68
BciVI GTATCC 3 cut(s) 528, 576, 585
BcnI CCSGG 5 cut(s) 239, 708, 729, 891, 892
BfaI CTAG 4 cut(s) 416, 570, 627, 913
BfoI RGCGCY 2 cut(s) 558, 847
BfuI GTATCC 3 cut(s) 528, 576, 585
BglI GCCNNNNNGGC 1 cut(s) 811
BisI GCNGC 5 cut(s) 39, 102, 126, 133, 806
BlnI CCTAGG 1 cut(s) 569
BlsI GCNGC 5 cut(s) 40, 103, 127, 134, 807
Bme18I GGWCC 2 cut(s) 605, 662
BmeT110I CYCGRG 1 cut(s) 890
BmgT120I GGNCC 5 cut(s) 500, 605, 662, 803, 854
BmiI GGNNCC 4 cut(s) 664, 845, 855, 869
BmsI GCATC 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 453
BpmI CTGGAG 3 cut(s) 227, 738, 762
Bpu14I TTCGAA 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 420
BpuMI CCSGG 5 cut(s) 239, 708, 729, 891, 892
BsaBI GATNNNNATC 3 cut(s) 540, 597, 825
BsaHI GRCGYC 1 cut(s) 844
BsaJI CCNNGG 8 cut(s) 497, 545, 569, 698, 707, 743, 809, 890
BsaWI WCCGGW 1 cut(s) 829
BsaXI ACNNNNNCTCC 4 cut(s) 143, 173, 200, 230
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 578
Bse8I GATNNNNATC 3 cut(s) 540, 597, 825
BseAI TCCGGA 1 cut(s) 829
BseDI CCNNGG 8 cut(s) 497, 545, 569, 698, 707, 743, 809, 890
BseGI GGATG 1 cut(s) 30
BseJI GATNNNNATC 3 cut(s) 540, 597, 825
BseMII CTCAG 2 cut(s) 165, 338
BseNI ACTGG 1 cut(s) 578
BseRI GAGGAG 2 cut(s) 151, 470
BseX3I CGGCCG 1 cut(s) 130
Bsh1236I CGCG 1 cut(s) 221
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 4 cut(s) 132, 502, 805, 856
BshNI GGYRCC 1 cut(s) 843
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 787
BsiHKCI CYCGRG 1 cut(s) 890
BsiSI CCGG 7 cut(s) 108, 129, 238, 707, 728, 830, 891
BslFI GGGAC 1 cut(s) 698
BsmFI GGGAC 1 cut(s) 698
BsmI GAATGC 1 cut(s) 624
BsnI GGCC 4 cut(s) 132, 502, 805, 856
BsoBI CYCGRG 1 cut(s) 890
Bsp119I TTCGAA 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 787
Bsp13I TCCGGA 1 cut(s) 829
Bsp143I GATC 7 cut(s) 535, 592, 670, 739, 793, 826, 867
BspACI CCGC 8 cut(s) 26, 39, 55, 102, 126, 133, 168, 806
BspANI GGCC 4 cut(s) 132, 502, 805, 856
BspCNI CTCAG 2 cut(s) 166, 337
BspEI TCCGGA 1 cut(s) 829
BspFNI CGCG 1 cut(s) 221
BspLI GGNNCC 4 cut(s) 664, 845, 855, 869
BspPI GGATC 5 cut(s) 734, 788, 821, 862, 875
BspT104I TTCGAA 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 843
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 1 cut(s) 578
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 8 cut(s) 497, 545, 569, 698, 707, 743, 809, 890
BssMI GATC 7 cut(s) 535, 592, 670, 739, 793, 826, 867
BssNI GRCGYC 1 cut(s) 844
BssT1I CCWWGG 1 cut(s) 569
Bst4CI ACNGT 2 cut(s) 338, 396
Bst6I CTCTTC 1 cut(s) 169
BstACI GRCGYC 1 cut(s) 844
BstBI TTCGAA 1 cut(s) 251
BstC8I GCNNGC 4 cut(s) 43, 130, 553, 787
BstDEI CTNAG 2 cut(s) 174, 324
BstF5I GGATG 1 cut(s) 30
BstFNI CGCG 1 cut(s) 221
BstH2I RGCGCY 2 cut(s) 558, 847
BstHHI GCGC 2 cut(s) 557, 846
BstKTI GATC 7 cut(s) 538, 595, 673, 742, 796, 829, 870
BstMBI GATC 7 cut(s) 535, 592, 670, 739, 793, 826, 867
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 4 cut(s) 89, 98, 317, 811
BstNSI RCATGY 1 cut(s) 655
BstUI CGCG 1 cut(s) 221
BstV2I GAAGAC 1 cut(s) 453
BstX2I RGATCY 1 cut(s) 867
BstYI RGATCY 1 cut(s) 867
BstZI CGGCCG 1 cut(s) 130
BsuI GTATCC 3 cut(s) 528, 576, 585
BsuRI GGCC 4 cut(s) 132, 502, 805, 856
BtsCI GGATG 1 cut(s) 30
BtsIMutI CAGTG 2 cut(s) 334, 585
Cac8I GCNNGC 4 cut(s) 43, 130, 553, 787
CfoI GCGC 2 cut(s) 557, 846
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 5 cut(s) 500, 605, 662, 803, 854
Cfr9I CCCGGG 1 cut(s) 890
CsiI ACCWGGT 1 cut(s) 607
Csp6I GTAC 1 cut(s) 217
CviAII CATG 2 cut(s) 22, 652
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 2 cut(s) 174, 324
DinI GGCGCC 1 cut(s) 845
DpnI GATC 7 cut(s) 537, 594, 672, 741, 795, 828, 869
DpnII GATC 7 cut(s) 535, 592, 670, 739, 793, 826, 867
DrdI GACNNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 130
EagI CGGCCG 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
EclXI CGGCCG 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 569
Eco32I GATATC 1 cut(s) 491
Eco47I GGWCC 2 cut(s) 605, 662
Eco52I CGGCCG 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 890
EcoRV GATATC 1 cut(s) 491
EcoT14I CCWWGG 1 cut(s) 569
EgeI GGCGCC 1 cut(s) 845
EheI GGCGCC 1 cut(s) 845
ErhI CCWWGG 1 cut(s) 569
FaeI CATG 2 cut(s) 25, 655
FaiI YATR 6 cut(s) 23, 360, 653, 799, 801, 909
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FaqI GGGAC 1 cut(s) 698
FatI CATG 2 cut(s) 21, 651
FauNDI CATATG 1 cut(s) 799
Fnu4HI GCNGC 5 cut(s) 39, 102, 126, 133, 806
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 5 cut(s) 39, 102, 126, 133, 806
FspBI CTAG 4 cut(s) 416, 570, 627, 913
GlaI GCGC 2 cut(s) 556, 845
GluI GCNGC 5 cut(s) 39, 102, 126, 133, 806
GsuI CTGGAG 3 cut(s) 227, 738, 762
HaeII RGCGCY 2 cut(s) 558, 847
HaeIII GGCC 4 cut(s) 132, 502, 805, 856
HapII CCGG 7 cut(s) 108, 129, 238, 707, 728, 830, 891
HhaI GCGC 2 cut(s) 557, 846
Hin1I GRCGYC 1 cut(s) 844
Hin1II CATG 2 cut(s) 25, 655
Hin6I GCGC 2 cut(s) 555, 844
HinP1I GCGC 2 cut(s) 555, 844
HinfI GANTC 2 cut(s) 424, 458
HpaII CCGG 7 cut(s) 108, 129, 238, 707, 728, 830, 891
HphI GGTGA 3 cut(s) 277, 365, 542
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 4 cut(s) 35, 148, 327, 904
Hpy188III TCNNGA 3 cut(s) 737, 818, 830
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 5 cut(s) 106, 250, 341, 507, 633
HpyCH4III ACNGT 2 cut(s) 338, 396
HpyCH4IV ACGT 1 cut(s) 687
HpyCH4V TGCA 2 cut(s) 364, 839
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 98, 317, 811
HpyF3I CTNAG 2 cut(s) 174, 324
HpySE526I ACGT 1 cut(s) 687
Hsp92I GRCGYC 1 cut(s) 844
Hsp92II CATG 2 cut(s) 25, 655
HspAI GCGC 2 cut(s) 555, 844
KasI GGCGCC 1 cut(s) 843
Kpn2I TCCGGA 1 cut(s) 829
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
Kzo9I GATC 7 cut(s) 535, 592, 670, 739, 793, 826, 867
LmnI GCTCC 1 cut(s) 883
LweI GCATC 1 cut(s) 292
MabI ACCWGGT 1 cut(s) 607
MaeI CTAG 4 cut(s) 416, 570, 627, 913
MaeII ACGT 1 cut(s) 687
MalI GATC 7 cut(s) 537, 594, 672, 741, 795, 828, 869
MboI GATC 7 cut(s) 535, 592, 670, 739, 793, 826, 867
MboII GAAGA 4 cut(s) 156, 265, 433, 453
MflI RGATCY 1 cut(s) 867
MhlI GDGCHC 1 cut(s) 787
MluCI AATT 3 cut(s) 341, 382, 449
MluI ACGCGT 1 cut(s) 219
Mly113I GGCGCC 1 cut(s) 844
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 3 cut(s) 466, 640, 670
MnlI CCTC 9 cut(s) 115, 167, 169, 172, 367, 448, 713, 753, 786
MroI TCCGGA 1 cut(s) 829
MroNI GCCGGC 1 cut(s) 128
MroXI GAANNNNTTC 1 cut(s) 622
MseI TTAA 2 cut(s) 119, 399
MslI CAYNNNNRTG 1 cut(s) 416
MspI CCGG 7 cut(s) 108, 129, 238, 707, 728, 830, 891
Mva1269I GAATGC 1 cut(s) 624
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 4 cut(s) 89, 98, 317, 811
NaeI GCCGGC 1 cut(s) 130
NarI GGCGCC 1 cut(s) 844
NciI CCSGG 5 cut(s) 239, 708, 729, 891, 892
NdeI CATATG 1 cut(s) 799
NdeII GATC 7 cut(s) 535, 592, 670, 739, 793, 826, 867
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 2 cut(s) 25, 655
NlaIV GGNNCC 4 cut(s) 664, 845, 855, 869
NspI RCATGY 1 cut(s) 655
NspV TTCGAA 1 cut(s) 251
OliI CACNNNNGTG 1 cut(s) 416
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 1 cut(s) 624
PdiI GCCGGC 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 622
PfeI GAWTC 1 cut(s) 424
PflFI GACNNNGTC 1 cut(s) 71
PflMI CCANNNNNTGG 2 cut(s) 527, 584
PfoI TCCNGGA 2 cut(s) 601, 715
PkrI GCNGC 5 cut(s) 40, 103, 127, 134, 807
PleI GAGTC 1 cut(s) 466
PluTI GGCGCC 1 cut(s) 847
PpsI GAGTC 1 cut(s) 466
PspN4I GGNNCC 4 cut(s) 664, 845, 855, 869
PspPI GGNCC 5 cut(s) 500, 605, 662, 803, 854
PsuI RGATCY 1 cut(s) 867
PsyI GACNNNGTC 1 cut(s) 71
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 416
SaqAI TTAA 2 cut(s) 119, 399
SatI GCNGC 5 cut(s) 39, 102, 126, 133, 806
Sau3AI GATC 7 cut(s) 535, 592, 670, 739, 793, 826, 867
Sau96I GGNCC 5 cut(s) 500, 605, 662, 803, 854
SchI GAGTC 1 cut(s) 467
SduI GDGCHC 1 cut(s) 787
SexAI ACCWGGT 1 cut(s) 607
SfaNI GCATC 1 cut(s) 292
SfoI GGCGCC 1 cut(s) 845
SfuI TTCGAA 1 cut(s) 251
SinI GGWCC 2 cut(s) 605, 662
SmaI CCCGGG 1 cut(s) 892
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 435
SmoI CTYRAG 1 cut(s) 435
Sse9I AATT 3 cut(s) 341, 382, 449
SsiI CCGC 8 cut(s) 26, 39, 55, 102, 126, 133, 168, 806
SspDI GGCGCC 1 cut(s) 843
SspMI CTAG 4 cut(s) 416, 570, 627, 913
StyI CCWWGG 1 cut(s) 569
TaaI ACNGT 2 cut(s) 338, 396
TaiI ACGT 1 cut(s) 690
TaqI TCGA 3 cut(s) 251, 446, 493
TaqII GACCGA 1 cut(s) 7
TasI AATT 3 cut(s) 341, 382, 449
TauI GCSGC 5 cut(s) 41, 104, 128, 135, 808
TfiI GAWTC 1 cut(s) 424
Tru1I TTAA 2 cut(s) 119, 399
Tru9I TTAA 2 cut(s) 119, 399
TscAI CASTG 2 cut(s) 341, 585
TspMI CCCGGG 1 cut(s) 890
TspRI CASTG 2 cut(s) 341, 585
Tth111I GACNNNGTC 1 cut(s) 71
Van91I CCANNNNNTGG 2 cut(s) 527, 584
VpaK11BI GGWCC 2 cut(s) 605, 662
XapI RAATTY 1 cut(s) 341
XceI RCATGY 1 cut(s) 655
XmaI CCCGGG 1 cut(s) 890
XmaJI CCTAGG 1 cut(s) 569
XmnI GAANNNNTTC 1 cut(s) 622
XspI CTAG 4 cut(s) 416, 570, 627, 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.