Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Forward (+)

24562790 .. 24565773

Gene Structure 2984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG137800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCGAACGAAAAGTCGGTGATGGCGGTGATCAGAGCGGCGAGGCCAACCTTCCGCAACAACAACGACAAGGTTGCTTTTGCGGTTCACGCCTCTTTCGTAGCCTCCGGGTACGAGCTCATCGCCACCGGCCCTCCTGCCTTTTCCGATTCTGCCCTCCTCTCCTCCTCCTCCTCCTCAACCGATGAAGTAGGAATCGATGGATGGAACGAGCTTGACGAGGAGTACGCTTTCGTCTACGCCAACGCCGAAAACAAGAACAAATTACTGGTCAAATGTCTTGTGATGAACGAGAAATTGTTCGTGGATGCTTTGGCTTCTCACTCTCTCCATCTCGAAATCAATGTGGGTGACTATGTTGGAGGAGAGAGTGGCAGCAATTACTCTTCACAGTTCAAAAATTTGGAGACACTGGTCAACACTCTGGACGCTCAACTTTTGTCTAAATTGGATTCCAGTTCCTCAAATAGTAACGTCGCCCCCGTAAGTTCAGAAACAAGTGAGAGATCAACAACTGAGCCTCCTACTCGACCTTCGGATCCTCCTCTTCCTTCCAGAATTGTCTATCCTTCTGTTAATCCTATAGGTGATAGTGATCGTTTCCCTGGGCTTGGTGCTGGATTGTATCCTGCTAGAGGTGATTTTGGTGGTGGAGGCATGCTTCTAGGACCAAATGATCCTCGGTGGTTTGGTGGCATTAGAGAACCTGGGTTTCCTGGAGGACAACCGGGTGTTCCTCCCGGTGCTCGTTTTGACCCCTATGGGCCACCTGGTGTTCCTGGTTTTGAGCCCAATAGGTTTGCAAGGAATCCACGGAGACCGGGGGGTGGCACTCATCCAGACTTGGAACATTTTGGGAGTGGTTCTGATTTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

292

Amino Acids

30.97

Weight (kDa)

4.92

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI31_Prot_N	PF11566	15 - 155	8.8e-23	PI31 proteasome regulator N-terminal
PI31_Prot_C	PF08577	195 - 256	1.7e-06	PI31 proteasome regulator

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	237
AciI	CCGC	4 cut(s)	26, 38, 55, 83
AclWI	GGATC	3 cut(s)	533, 546, 671
AcsI	RAATTY	1 cut(s)	400
AdeI	CACNNNGTG	1 cut(s)	773
AfaI	GTAC	2 cut(s)	113, 227
AfiI	CCNNNNNNNGG	3 cut(s)	611, 635, 827
AgsI	TTSAA	1 cut(s)	397
AjnI	CCWGG	5 cut(s)	604, 706, 715, 769, 778
AluBI	AGCT	2 cut(s)	118, 214
AluI	AGCT	2 cut(s)	118, 214
Alw21I	GWGCWC	2 cut(s)	120, 748
Alw26I	GTCTC	2 cut(s)	401, 811
AlwI	GGATC	3 cut(s)	533, 546, 671
AoxI	GGCC	3 cut(s)	44, 130, 764
ApeKI	GCWGC	1 cut(s)	375
ApoI	RAATTY	1 cut(s)	400
ArsI	GACNNNNNNTTYG	3 cut(s)	31, 255, 287
Asp700I	GAANNNNTTC	1 cut(s)	299
AspS9I	GGNCC	3 cut(s)	131, 668, 764
AsuC2I	CCSGG	4 cut(s)	109, 729, 741, 822
AsuHPI	GGTGA	5 cut(s)	31, 40, 362, 599, 650
AvaII	GGWCC	1 cut(s)	668
BamHI	GGATCC	1 cut(s)	538
BanII	GRGCYC	2 cut(s)	120, 792
Bbv12I	GWGCWC	2 cut(s)	120, 748
BbvI	GCAGC	1 cut(s)	387
BccI	CCATC	4 cut(s)	16, 194, 198, 339
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	5 cut(s)	606, 708, 717, 771, 780
BciVI	GTATCC	1 cut(s)	636
BclI	TGATCA	1 cut(s)	30
BcnI	CCSGG	4 cut(s)	109, 729, 741, 822
BcoDI	GTCTC	2 cut(s)	401, 811
BfaI	CTAG	2 cut(s)	633, 665
BfmI	CTRYAG	1 cut(s)	582
BfuI	GTATCC	1 cut(s)	636
BisI	GCNGC	2 cut(s)	39, 376
BlsI	GCNGC	2 cut(s)	40, 377
Bme1390I	CCNGG	9 cut(s)	109, 606, 708, 717, 729, 741, 771, 780, 822
Bme18I	GGWCC	1 cut(s)	668
BmgT120I	GGNCC	3 cut(s)	131, 668, 764
BmiI	GGNNCC	1 cut(s)	540
BmrFI	CCNGG	9 cut(s)	109, 606, 708, 717, 729, 741, 771, 780, 822
BmsI	GCATC	1 cut(s)	298
BoxI	GACNNNNGTC	1 cut(s)	413
BpmI	CTGGAG	1 cut(s)	738
BpuMI	CCSGG	4 cut(s)	109, 729, 741, 822
Bsa29I	ATCGAT	1 cut(s)	198
BsaBI	GATNNNNATC	1 cut(s)	594
BsaI	GGTCTC	1 cut(s)	811
BsaJI	CCNNGG	6 cut(s)	604, 605, 680, 707, 812, 821
BsaXI	ACNNNNNCTCC	4 cut(s)	118, 148, 505, 535
Bsc4I	CCNNNNNNNGG	3 cut(s)	611, 635, 827
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	3 cut(s)	273, 417, 456
Bse8I	GATNNNNATC	1 cut(s)	594
BseBI	CCWGG	5 cut(s)	606, 708, 717, 771, 780
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	6 cut(s)	604, 605, 680, 707, 812, 821
BseGI	GGATG	3 cut(s)	209, 313, 835
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	3 cut(s)	611, 635, 827
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	3 cut(s)	273, 417, 456
BseRI	GAGGAG	9 cut(s)	149, 154, 157, 160, 163, 166, 236, 378, 534
BseXI	GCAGC	1 cut(s)	387
BshFI	GGCC	3 cut(s)	46, 132, 766
BshVI	ATCGAT	1 cut(s)	198
BsiHKAI	GWGCWC	2 cut(s)	120, 748
BsiSI	CCGG	5 cut(s)	108, 129, 728, 741, 821
BslI	CCNNNNNNNGG	3 cut(s)	611, 635, 827
BsmAI	GTCTC	2 cut(s)	401, 811
BsnI	GGCC	3 cut(s)	46, 132, 766
Bso31I	GGTCTC	1 cut(s)	811
Bsp1286I	GDGCHC	3 cut(s)	120, 748, 792
Bsp143I	GATC	5 cut(s)	30, 506, 538, 595, 676
BspACI	CCGC	4 cut(s)	26, 38, 55, 83
BspANI	GGCC	3 cut(s)	46, 132, 766
BspCNI	CTCAG	1 cut(s)	508
BspDI	ATCGAT	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	540
BspPI	GGATC	3 cut(s)	533, 546, 671
BspTNI	GGTCTC	1 cut(s)	811
BsrBI	CCGCTC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	3 cut(s)	273, 417, 456
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	6 cut(s)	604, 605, 680, 707, 812, 821
BssMI	GATC	5 cut(s)	30, 506, 538, 595, 676
Bst2UI	CCWGG	5 cut(s)	606, 708, 717, 771, 780
Bst4CI	ACNGT	1 cut(s)	393
Bst6I	CTCTTC	2 cut(s)	391, 552
BstC8I	GCNNGC	1 cut(s)	659
BstDEI	CTNAG	1 cut(s)	516
BstDSI	CCRYGG	1 cut(s)	812
BstENI	CCTNNNNNAGG	1 cut(s)	633
BstF5I	GGATG	3 cut(s)	209, 313, 835
BstKTI	GATC	5 cut(s)	33, 509, 541, 598, 679
BstMAI	GTCTC	2 cut(s)	401, 811
BstMBI	GATC	5 cut(s)	30, 506, 538, 595, 676
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	5 cut(s)	606, 708, 717, 771, 780
BstNSI	RCATGY	1 cut(s)	661
BstPAI	GACNNNNGTC	1 cut(s)	413
BstSCI	CCNGG	9 cut(s)	107, 604, 706, 715, 727, 739, 769, 778, 820
BstSFI	CTRYAG	1 cut(s)	582
BstV1I	GCAGC	1 cut(s)	387
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
Bsu15I	ATCGAT	1 cut(s)	198
BsuI	GTATCC	1 cut(s)	636
BsuRI	GGCC	3 cut(s)	46, 132, 766
BsuTUI	ATCGAT	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	812
BtgZI	GCGATG	1 cut(s)	106
BtsCI	GGATG	3 cut(s)	209, 313, 835
BtsIMutI	CAGTG	1 cut(s)	410
Cac8I	GCNNGC	1 cut(s)	659
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	3 cut(s)	131, 668, 764
ClaI	ATCGAT	1 cut(s)	198
CseI	GACGC	1 cut(s)	437
CsiI	ACCWGGT	1 cut(s)	769
Csp6I	GTAC	2 cut(s)	112, 226
CviAII	CATG	1 cut(s)	658
CviQI	GTAC	2 cut(s)	112, 226
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	5 cut(s)	32, 508, 540, 597, 678
DpnII	GATC	5 cut(s)	30, 506, 538, 595, 676
DraIII	CACNNNGTG	1 cut(s)	773
Eam1104I	CTCTTC	2 cut(s)	391, 552
EarI	CTCTTC	2 cut(s)	391, 552
Ecl136II	GAGCTC	1 cut(s)	118
Eco24I	GRGCYC	2 cut(s)	120, 792
Eco31I	GGTCTC	1 cut(s)	811
Eco47I	GGWCC	1 cut(s)	668
Eco53kI	GAGCTC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	118
EcoNI	CCTNNNNNAGG	1 cut(s)	633
EcoRII	CCWGG	5 cut(s)	604, 706, 715, 769, 778
EcoT38I	GRGCYC	2 cut(s)	120, 792
FaeI	CATG	1 cut(s)	661
FaiI	YATR	4 cut(s)	357, 584, 659, 762
FatI	CATG	1 cut(s)	657
FbaI	TGATCA	1 cut(s)	30
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	2 cut(s)	39, 376
FokI	GGATG	3 cut(s)	216, 320, 822
FriOI	GRGCYC	2 cut(s)	120, 792
Fsp4HI	GCNGC	2 cut(s)	39, 376
FspBI	CTAG	2 cut(s)	633, 665
GluI	GCNGC	2 cut(s)	39, 376
GsuI	CTGGAG	1 cut(s)	738
HaeIII	GGCC	3 cut(s)	46, 132, 766
HapII	CCGG	5 cut(s)	108, 129, 728, 741, 821
HgaI	GACGC	1 cut(s)	437
Hin1II	CATG	1 cut(s)	661
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	4 cut(s)	149, 195, 452, 808
HpaII	CCGG	5 cut(s)	108, 129, 728, 741, 821
HphI	GGTGA	5 cut(s)	31, 40, 362, 599, 650
Hpy166II	GTNNAC	3 cut(s)	88, 238, 418
Hpy188I	TCNGA	5 cut(s)	35, 148, 493, 538, 868
Hpy188III	TCNNGA	4 cut(s)	335, 425, 555, 839
Hpy8I	GTNNAC	3 cut(s)	88, 238, 418
Hpy99I	CGWCG	1 cut(s)	479
HpyAV	CCTTC	4 cut(s)	61, 543, 561, 579
HpyCH4III	ACNGT	1 cut(s)	393
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	1 cut(s)	803
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	1 cut(s)	516
HpySE526I	ACGT	1 cut(s)	474
Hsp92II	CATG	1 cut(s)	661
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	5 cut(s)	30, 506, 538, 595, 676
Lsp1109I	GCAGC	1 cut(s)	387
LweI	GCATC	1 cut(s)	298
MabI	ACCWGGT	1 cut(s)	769
MaeI	CTAG	2 cut(s)	633, 665
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	2 cut(s)	350, 470
MalI	GATC	5 cut(s)	32, 508, 540, 597, 678
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	5 cut(s)	30, 506, 538, 595, 676
MboII	GAAGA	2 cut(s)	378, 539
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	3 cut(s)	120, 748, 792
MluCI	AATT	6 cut(s)	263, 296, 379, 400, 446, 558
MmeI	TCCRAC	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	1 cut(s)	576
MspI	CCGG	5 cut(s)	108, 129, 728, 741, 821
MspR9I	CCNGG	9 cut(s)	109, 606, 708, 717, 729, 741, 771, 780, 822
MvaI	CCWGG	5 cut(s)	606, 708, 717, 771, 780
MwoI	GCNNNNNNNGC	1 cut(s)	89
NciI	CCSGG	4 cut(s)	109, 729, 741, 822
NdeII	GATC	5 cut(s)	30, 506, 538, 595, 676
NlaIII	CATG	1 cut(s)	661
NlaIV	GGNNCC	1 cut(s)	540
NmuCI	GTSAC	1 cut(s)	350
NspI	RCATGY	1 cut(s)	661
PaeI	GCATGC	1 cut(s)	661
PasI	CCCWGGG	1 cut(s)	605
PcsI	WCGNNNNNNNCGW	4 cut(s)	96, 216, 246, 480
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	4 cut(s)	149, 195, 452, 808
PfoI	TCCNGGA	1 cut(s)	715
PkrI	GCNGC	2 cut(s)	40, 377
PshAI	GACNNNNGTC	1 cut(s)	413
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	5 cut(s)	604, 706, 715, 769, 778
PspGI	CCWGG	5 cut(s)	604, 706, 715, 769, 778
PspN4I	GGNNCC	1 cut(s)	540
PspPI	GGNCC	3 cut(s)	131, 668, 764
PsuI	RGATCY	1 cut(s)	538
RsaI	GTAC	2 cut(s)	113, 227
RsaNI	GTAC	2 cut(s)	112, 226
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	2 cut(s)	39, 376
Sau3AI	GATC	5 cut(s)	30, 506, 538, 595, 676
Sau96I	GGNCC	3 cut(s)	131, 668, 764
ScrFI	CCNGG	9 cut(s)	109, 606, 708, 717, 729, 741, 771, 780, 822
SduI	GDGCHC	3 cut(s)	120, 748, 792
SexAI	ACCWGGT	1 cut(s)	769
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	582
SinI	GGWCC	1 cut(s)	668
SphI	GCATGC	1 cut(s)	661
Sse9I	AATT	6 cut(s)	263, 296, 379, 400, 446, 558
SsiI	CCGC	4 cut(s)	26, 38, 55, 83
SspMI	CTAG	2 cut(s)	633, 665
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	9 cut(s)	107, 604, 706, 715, 727, 739, 769, 778, 820
TaaI	ACNGT	1 cut(s)	393
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	3 cut(s)	198, 336, 529
TasI	AATT	6 cut(s)	263, 296, 379, 400, 446, 558
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	4 cut(s)	149, 195, 452, 808
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TscAI	CASTG	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	1 cut(s)	375
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	3 cut(s)	201, 302, 862
TspGWI	ACGGA	1 cut(s)	829
TspRI	CASTG	1 cut(s)	417
VpaK11BI	GGWCC	1 cut(s)	668
XagI	CCTNNNNNAGG	1 cut(s)	633
XapI	RAATTY	1 cut(s)	400
XceI	RCATGY	1 cut(s)	661
XmiI	GTMKAC	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	2 cut(s)	633, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.