Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008087.1

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Forward (+)

27065 .. 30110

Gene Structure 3046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008087.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atggcggtgatcagagcggcgaggccaaccttccgcaacaacaacgacaaggttgcttttgcagttcacgcctctttcgtagcctccgggtacgagctcatcgccaccgggcctcctgctttttccgattccgccctcctctcctcctccccaaccgatgaagtaggaattgatggatggaacgagcttgacgaggagtacgctttcgtctacgccaacgccgaaaacaagaacaagttactggtcaaatgccttgtgatgaacgagaaattgttcgtggatgctttggcttctcactcgctccatctggaaatcaatgtgggtgactatgttggaggagagagtggcagcaattactcttcacagttcaaaaatttggagacactggtcagcactctggacgctcaacttttgtctaaatttgattccagttcctcaactagtaacgtcgcccccggaagttcagaaacaagtgagagatcaattactgagcctcctactcgaccttcggatcctccacttccttccagaattgtctatccttctgttaatcctataggtgatagtgatcgtttccctgggcctggtgctggaatgtatcctgctagaggtgattttggtggtggaggcatgcttctaggaccaaatgatcctcggtggtttggcggcattagagagcctgggtttcctggaggacaaccgggtgttcctcctggtgctcgttttgacccctatgggccacctggtgttcctggttttgagcccaacaggtttgcaaggaatccacggagaccggggggtggcactcatccagacttggaacattttgggagtggttctgatttcatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

283

Amino Acids

30.02

Weight (kDa)

4.9

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	17
AccI	GTMKAC	1 cut(s)	210
AciI	CCGC	5 cut(s)	5, 17, 34, 132, 666
AclWI	GGATC	3 cut(s)	506, 519, 644
AcsI	RAATTY	2 cut(s)	373, 419
AdeI	CACNNNGTG	1 cut(s)	746
AfaI	GTAC	2 cut(s)	92, 200
AfiI	CCNNNNNNNGG	4 cut(s)	584, 590, 608, 800
AgsI	TTSAA	1 cut(s)	370
AhlI	ACTAGT	1 cut(s)	440
AjnI	CCWGG	7 cut(s)	577, 583, 679, 688, 712, 742, 751
AluBI	AGCT	2 cut(s)	97, 187
AluI	AGCT	2 cut(s)	97, 187
Alw21I	GWGCWC	2 cut(s)	99, 721
Alw26I	GTCTC	2 cut(s)	374, 784
AlwI	GGATC	3 cut(s)	506, 519, 644
AoxI	GGCC	4 cut(s)	23, 110, 581, 737
ApeKI	GCWGC	1 cut(s)	348
ApoI	RAATTY	2 cut(s)	373, 419
Asp700I	GAANNNNTTC	1 cut(s)	272
AspS9I	GGNCC	4 cut(s)	110, 581, 641, 737
AsuC2I	CCSGG	5 cut(s)	88, 109, 456, 702, 795
AsuHPI	GGTGA	4 cut(s)	19, 335, 572, 623
AvaII	GGWCC	1 cut(s)	641
BamHI	GGATCC	1 cut(s)	511
BanII	GRGCYC	2 cut(s)	99, 765
Bbv12I	GWGCWC	2 cut(s)	99, 721
BbvI	GCAGC	1 cut(s)	360
BccI	CCATC	3 cut(s)	167, 171, 312
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciT130I	CCWGG	7 cut(s)	579, 585, 681, 690, 714, 744, 753
BciVI	GTATCC	1 cut(s)	609
BclI	TGATCA	1 cut(s)	9
BcnI	CCSGG	5 cut(s)	88, 109, 456, 702, 795
BcoDI	GTCTC	2 cut(s)	374, 784
BcuI	ACTAGT	1 cut(s)	440
BfaI	CTAG	3 cut(s)	441, 606, 638
BfmI	CTRYAG	1 cut(s)	555
BfuI	GTATCC	1 cut(s)	609
BisI	GCNGC	3 cut(s)	18, 349, 667
BlsI	GCNGC	3 cut(s)	19, 350, 668
Bme18I	GGWCC	1 cut(s)	641
BmgT120I	GGNCC	4 cut(s)	110, 581, 641, 737
BmiI	GGNNCC	1 cut(s)	513
BmsI	GCATC	1 cut(s)	271
BoxI	GACNNNNGTC	1 cut(s)	386
BpmI	CTGGAG	1 cut(s)	711
BpuMI	CCSGG	5 cut(s)	88, 109, 456, 702, 795
BsaBI	GATNNNNATC	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	784
BsaJI	CCNNGG	7 cut(s)	454, 577, 578, 653, 680, 785, 794
BsaXI	ACNNNNNCTCC	4 cut(s)	97, 127, 478, 508
Bsc4I	CCNNNNNNNGG	4 cut(s)	584, 590, 608, 800
Bse1I	ACTGG	3 cut(s)	246, 390, 429
Bse8I	GATNNNNATC	1 cut(s)	567
BseBI	CCWGG	7 cut(s)	579, 585, 681, 690, 714, 744, 753
BseDI	CCNNGG	7 cut(s)	454, 577, 578, 653, 680, 785, 794
BseGI	GGATG	3 cut(s)	182, 286, 808
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	4 cut(s)	584, 590, 608, 800
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	3 cut(s)	246, 390, 429
BseRI	GAGGAG	5 cut(s)	128, 133, 136, 209, 351
BseXI	GCAGC	1 cut(s)	360
BshFI	GGCC	4 cut(s)	25, 112, 583, 739
BsiHKAI	GWGCWC	2 cut(s)	99, 721
BsiSI	CCGG	5 cut(s)	87, 108, 456, 701, 794
BslI	CCNNNNNNNGG	4 cut(s)	584, 590, 608, 800
BsmAI	GTCTC	2 cut(s)	374, 784
BsnI	GGCC	4 cut(s)	25, 112, 583, 739
Bso31I	GGTCTC	1 cut(s)	784
Bsp1286I	GDGCHC	3 cut(s)	99, 721, 765
Bsp143I	GATC	5 cut(s)	9, 479, 511, 568, 649
BspACI	CCGC	5 cut(s)	5, 17, 34, 132, 666
BspANI	GGCC	4 cut(s)	25, 112, 583, 739
BspCNI	CTCAG	1 cut(s)	481
BspLI	GGNNCC	1 cut(s)	513
BspPI	GGATC	3 cut(s)	506, 519, 644
BspTNI	GGTCTC	1 cut(s)	784
BsrBI	CCGCTC	1 cut(s)	17
BsrI	ACTGG	3 cut(s)	246, 390, 429
BssECI	CCNNGG	7 cut(s)	454, 577, 578, 653, 680, 785, 794
BssMI	GATC	5 cut(s)	9, 479, 511, 568, 649
Bst2UI	CCWGG	7 cut(s)	579, 585, 681, 690, 714, 744, 753
Bst4CI	ACNGT	1 cut(s)	366
Bst6I	CTCTTC	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	632
BstDEI	CTNAG	1 cut(s)	489
BstDSI	CCRYGG	1 cut(s)	785
BstENI	CCTNNNNNAGG	1 cut(s)	606
BstF5I	GGATG	3 cut(s)	182, 286, 808
BstKTI	GATC	5 cut(s)	12, 482, 514, 571, 652
BstMAI	GTCTC	2 cut(s)	374, 784
BstMBI	GATC	5 cut(s)	9, 479, 511, 568, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	7 cut(s)	579, 585, 681, 690, 714, 744, 753
BstNSI	RCATGY	1 cut(s)	634
BstPAI	GACNNNNGTC	1 cut(s)	386
BstSFI	CTRYAG	1 cut(s)	555
BstV1I	GCAGC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BsuI	GTATCC	1 cut(s)	609
BsuRI	GGCC	4 cut(s)	25, 112, 583, 739
BtgI	CCRYGG	1 cut(s)	785
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	3 cut(s)	182, 286, 808
BtsIMutI	CAGTG	1 cut(s)	383
Cac8I	GCNNGC	1 cut(s)	632
Cfr13I	GGNCC	4 cut(s)	110, 581, 641, 737
CseI	GACGC	1 cut(s)	410
CsiI	ACCWGGT	1 cut(s)	742
Csp6I	GTAC	2 cut(s)	91, 199
CviAII	CATG	1 cut(s)	631
CviQI	GTAC	2 cut(s)	91, 199
DdeI	CTNAG	1 cut(s)	489
DpnI	GATC	5 cut(s)	11, 481, 513, 570, 651
DpnII	GATC	5 cut(s)	9, 479, 511, 568, 649
DraIII	CACNNNGTG	1 cut(s)	746
Eam1104I	CTCTTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	364
EciI	GGCGGA	1 cut(s)	121
Ecl136II	GAGCTC	1 cut(s)	97
Eco24I	GRGCYC	2 cut(s)	99, 765
Eco31I	GGTCTC	1 cut(s)	784
Eco47I	GGWCC	1 cut(s)	641
Eco53kI	GAGCTC	1 cut(s)	97
EcoICRI	GAGCTC	1 cut(s)	97
EcoNI	CCTNNNNNAGG	1 cut(s)	606
EcoRII	CCWGG	7 cut(s)	577, 583, 679, 688, 712, 742, 751
EcoT38I	GRGCYC	2 cut(s)	99, 765
FaeI	CATG	1 cut(s)	634
FaiI	YATR	4 cut(s)	330, 557, 632, 735
FatI	CATG	1 cut(s)	630
FbaI	TGATCA	1 cut(s)	9
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	3 cut(s)	18, 349, 667
FokI	GGATG	3 cut(s)	189, 293, 795
FriOI	GRGCYC	2 cut(s)	99, 765
Fsp4HI	GCNGC	3 cut(s)	18, 349, 667
FspBI	CTAG	3 cut(s)	441, 606, 638
GluI	GCNGC	3 cut(s)	18, 349, 667
GsuI	CTGGAG	1 cut(s)	711
HaeIII	GGCC	4 cut(s)	25, 112, 583, 739
HapII	CCGG	5 cut(s)	87, 108, 456, 701, 794
HgaI	GACGC	1 cut(s)	410
Hin1II	CATG	1 cut(s)	634
HinfI	GANTC	3 cut(s)	128, 425, 781
HpaII	CCGG	5 cut(s)	87, 108, 456, 701, 794
HphI	GGTGA	4 cut(s)	19, 335, 572, 623
Hpy166II	GTNNAC	2 cut(s)	67, 211
Hpy188I	TCNGA	5 cut(s)	14, 127, 466, 511, 841
Hpy188III	TCNNGA	4 cut(s)	308, 398, 528, 812
Hpy8I	GTNNAC	2 cut(s)	67, 211
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	4 cut(s)	40, 516, 534, 552
HpyCH4III	ACNGT	1 cut(s)	366
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	2 cut(s)	62, 776
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	489
HpySE526I	ACGT	1 cut(s)	447
Hsp92II	CATG	1 cut(s)	634
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	5 cut(s)	9, 479, 511, 568, 649
LmnI	GCTCC	1 cut(s)	306
Lsp1109I	GCAGC	1 cut(s)	360
LweI	GCATC	1 cut(s)	271
MabI	ACCWGGT	1 cut(s)	742
MaeI	CTAG	3 cut(s)	441, 606, 638
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	3 cut(s)	237, 323, 443
MalI	GATC	5 cut(s)	11, 481, 513, 570, 651
MbiI	CCGCTC	1 cut(s)	17
MboI	GATC	5 cut(s)	9, 479, 511, 568, 649
MboII	GAAGA	1 cut(s)	351
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	3 cut(s)	99, 721, 765
MluCI	AATT	7 cut(s)	168, 269, 352, 373, 419, 483, 531
MmeI	TCCRAC	1 cut(s)	313
MroXI	GAANNNNTTC	1 cut(s)	272
MseI	TTAA	1 cut(s)	549
MspI	CCGG	5 cut(s)	87, 108, 456, 701, 794
MvaI	CCWGG	7 cut(s)	579, 585, 681, 690, 714, 744, 753
MwoI	GCNNNNNNNGC	1 cut(s)	68
NciI	CCSGG	5 cut(s)	88, 109, 456, 702, 795
NdeII	GATC	5 cut(s)	9, 479, 511, 568, 649
NlaIII	CATG	1 cut(s)	634
NlaIV	GGNNCC	1 cut(s)	513
NmuCI	GTSAC	1 cut(s)	323
NspI	RCATGY	1 cut(s)	634
PaeI	GCATGC	1 cut(s)	634
PasI	CCCWGGG	1 cut(s)	578
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 189, 219
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	3 cut(s)	128, 425, 781
PfoI	TCCNGGA	1 cut(s)	688
PkrI	GCNGC	3 cut(s)	19, 350, 668
PshAI	GACNNNNGTC	1 cut(s)	386
Psp124BI	GAGCTC	1 cut(s)	99
Psp6I	CCWGG	7 cut(s)	577, 583, 679, 688, 712, 742, 751
PspGI	CCWGG	7 cut(s)	577, 583, 679, 688, 712, 742, 751
PspN4I	GGNNCC	1 cut(s)	513
PspPI	GGNCC	4 cut(s)	110, 581, 641, 737
PsuI	RGATCY	1 cut(s)	511
RsaI	GTAC	2 cut(s)	92, 200
RsaNI	GTAC	2 cut(s)	91, 199
SacI	GAGCTC	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	3 cut(s)	18, 349, 667
Sau3AI	GATC	5 cut(s)	9, 479, 511, 568, 649
Sau96I	GGNCC	4 cut(s)	110, 581, 641, 737
SduI	GDGCHC	3 cut(s)	99, 721, 765
SexAI	ACCWGGT	1 cut(s)	742
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	555
SinI	GGWCC	1 cut(s)	641
SpeI	ACTAGT	1 cut(s)	440
SphI	GCATGC	1 cut(s)	634
Sse9I	AATT	7 cut(s)	168, 269, 352, 373, 419, 483, 531
SsiI	CCGC	5 cut(s)	5, 17, 34, 132, 666
SspMI	CTAG	3 cut(s)	441, 606, 638
SstI	GAGCTC	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	366
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	1 cut(s)	502
TasI	AATT	7 cut(s)	168, 269, 352, 373, 419, 483, 531
TauI	GCSGC	2 cut(s)	20, 669
TfiI	GAWTC	3 cut(s)	128, 425, 781
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	1 cut(s)	348
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	3 cut(s)	174, 275, 835
TspGWI	ACGGA	1 cut(s)	802
TspRI	CASTG	1 cut(s)	390
VpaK11BI	GGWCC	1 cut(s)	641
XagI	CCTNNNNNAGG	1 cut(s)	606
XapI	RAATTY	2 cut(s)	373, 419
XceI	RCATGY	1 cut(s)	634
XmiI	GTMKAC	1 cut(s)	210
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	3 cut(s)	441, 606, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.