Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Reverse (-)

43108460 .. 43109206

Gene Structure 747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00362230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCGAACGAAAAGTCGGTGATGGCGGTGATCAGAGTGGCGAGGCCATCCTTCCGCAACAAAAACGACAAGGTAGCTTTTACCGTTCACGCCTTCTTCCTTGCCTCTGGCTACGTGCTTATCGCTACCGGGCCTCCTGCTTTCTCCGACTCTGCCCTCTCGTCGTCGTTCTCCACCTGCGATGAAGAAGTAGGAACCGACCAATGGAACGAGCTGGACGAGGAGTACGCGTTCCTTTACGCCAACCCAGAAAACAAGAAGTTGGTGCTGGTCAAGTGCCTTGTAATAAACCATAAACTGTTGGTTGATGCTTTAGCTCAAGGCAGTAGTTCCGAAACGGTCCATCTCCAAATCAAGGTTGATGACTATGTTGGAGAGAGTAATACTAATGGCAGCAGCAATTTACAGAATTTGGAGACATTGGTGAAGAGCCTGGACACTCAGGTTTTGTGTAAATTAGATACTTGTTCCTCAAGTAATAGCAACAAGGCCTCAAGTTCAATAACAAGTACAACAACGGAGCCTGGTGGTACTGGAAGAATCTATCTTTCTTGGCCGGGTGCTGGAATGTACACTGCTAGAGGCGATTATGGAGCACCACCCCCGGCTCCTGTTTTTTTTTGCCGACCGGTTCGCGTGGAATGGTTCAGCTTTCATGTAGACGTGATTCGAAAAGAAAGATGTTGCGCTGTAATCATCAATGTCCTTAAATTACTTATTCTTCTCCTTCCGATCTCATTAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

248

Amino Acids

27.09

Weight (kDa)

6.1

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI31_Prot_N	PF11566	15 - 154	7e-23	PI31 proteasome regulator N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	185
Acc36I	ACCTGC	1 cut(s)	185
AccI	GTMKAC	1 cut(s)	660
AccII	CGCG	2 cut(s)	230, 636
AciI	CCGC	2 cut(s)	26, 55
AcoI	YGGCCR	1 cut(s)	554
AcsI	RAATTY	1 cut(s)	409
AfaI	GTAC	4 cut(s)	227, 511, 532, 572
AfiI	CCNNNNNNNGG	3 cut(s)	204, 355, 563
AflIII	ACRYGT	1 cut(s)	228
AgeI	ACCGGT	1 cut(s)	628
AgsI	TTSAA	1 cut(s)	501
AjiI	CACGTC	1 cut(s)	664
AjnI	CCWGG	2 cut(s)	432, 523
AloI	GAACNNNNNNTCC	2 cut(s)	215, 247
AluBI	AGCT	4 cut(s)	77, 214, 317, 651
AluI	AGCT	4 cut(s)	77, 214, 317, 651
Alw21I	GWGCWC	1 cut(s)	598
Alw26I	GTCTC	1 cut(s)	410
AoxI	GGCC	4 cut(s)	44, 131, 489, 554
ApeKI	GCWGC	2 cut(s)	393, 396
ApoI	RAATTY	1 cut(s)	409
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AsiGI	ACCGGT	1 cut(s)	628
AspLEI	GCGC	1 cut(s)	689
AspS9I	GGNCC	2 cut(s)	131, 340
AsuC2I	CCSGG	3 cut(s)	130, 558, 605
AsuHPI	GGTGA	3 cut(s)	31, 40, 436
AsuII	TTCGAA	1 cut(s)	670
AvaII	GGWCC	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	598
BbvI	GCAGC	2 cut(s)	405, 408
BccI	CCATC	3 cut(s)	16, 55, 351
BciT130I	CCWGG	2 cut(s)	434, 525
BclI	TGATCA	1 cut(s)	30
BcnI	CCSGG	3 cut(s)	130, 558, 605
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	1 cut(s)	579
BfuAI	ACCTGC	1 cut(s)	185
BisI	GCNGC	2 cut(s)	394, 397
BlsI	GCNGC	2 cut(s)	395, 398
Bme1390I	CCNGG	5 cut(s)	130, 434, 525, 558, 605
Bme18I	GGWCC	1 cut(s)	340
BmgBI	CACGTC	1 cut(s)	664
BmgT120I	GGNCC	2 cut(s)	131, 340
BmiI	GGNNCC	3 cut(s)	196, 522, 609
BmrFI	CCNGG	5 cut(s)	130, 434, 525, 558, 605
BmsI	GCATC	1 cut(s)	298
Bpu14I	TTCGAA	1 cut(s)	670
BpuEI	CTTGAG	3 cut(s)	303, 457, 478
BpuMI	CCSGG	3 cut(s)	130, 558, 605
BsaAI	YACGTR	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	603
BsaWI	WCCGGW	1 cut(s)	628
BsaXI	ACNNNNNCTCC	4 cut(s)	118, 148, 215, 245
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 355, 563
Bse118I	RCCGGY	1 cut(s)	628
Bse1I	ACTGG	1 cut(s)	538
BseBI	CCWGG	2 cut(s)	434, 525
BseDI	CCNNGG	1 cut(s)	603
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	3 cut(s)	204, 355, 563
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	2 cut(s)	405, 408
Bsh1236I	CGCG	2 cut(s)	230, 636
Bsh1285I	CGRYCG	1 cut(s)	629
BshFI	GGCC	4 cut(s)	46, 133, 491, 556
BshTI	ACCGGT	1 cut(s)	628
BsiEI	CGRYCG	1 cut(s)	629
BsiHKAI	GWGCWC	1 cut(s)	598
BsiSI	CCGG	4 cut(s)	129, 557, 605, 629
BslI	CCNNNNNNNGG	3 cut(s)	204, 355, 563
BsmAI	GTCTC	1 cut(s)	410
BsnI	GGCC	4 cut(s)	46, 133, 491, 556
Bsp119I	TTCGAA	1 cut(s)	670
Bsp1286I	GDGCHC	1 cut(s)	598
Bsp1407I	TGTACA	1 cut(s)	570
Bsp143I	GATC	2 cut(s)	30, 732
BspACI	CCGC	2 cut(s)	26, 55
BspANI	GGCC	4 cut(s)	46, 133, 491, 556
BspCNI	CTCAG	1 cut(s)	454
BspFNI	CGCG	2 cut(s)	230, 636
BspLI	GGNNCC	3 cut(s)	196, 522, 609
BspMI	ACCTGC	1 cut(s)	185
BspQI	GCTCTTC	1 cut(s)	422
BspT104I	TTCGAA	1 cut(s)	670
BsrFI	RCCGGY	1 cut(s)	628
BsrGI	TGTACA	1 cut(s)	570
BsrI	ACTGG	1 cut(s)	538
BssAI	RCCGGY	1 cut(s)	628
BssECI	CCNNGG	1 cut(s)	603
BssMI	GATC	2 cut(s)	30, 732
Bst2UI	CCWGG	2 cut(s)	434, 525
Bst4CI	ACNGT	3 cut(s)	85, 300, 340
Bst6I	CTCTTC	1 cut(s)	422
BstAUI	TGTACA	1 cut(s)	570
BstBAI	YACGTR	1 cut(s)	115
BstBI	TTCGAA	1 cut(s)	670
BstDEI	CTNAG	1 cut(s)	441
BstF5I	GGATG	1 cut(s)	47
BstFNI	CGCG	2 cut(s)	230, 636
BstHHI	GCGC	1 cut(s)	689
BstKTI	GATC	2 cut(s)	33, 735
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	2 cut(s)	30, 732
BstMCI	CGRYCG	1 cut(s)	629
BstNI	CCWGG	2 cut(s)	434, 525
BstSCI	CCNGG	5 cut(s)	128, 432, 523, 556, 603
BstUI	CGCG	2 cut(s)	230, 636
BstV1I	GCAGC	2 cut(s)	405, 408
BsuRI	GGCC	4 cut(s)	46, 133, 491, 556
BtgZI	GCGATG	1 cut(s)	195
BtrI	CACGTC	1 cut(s)	664
BtsCI	GGATG	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	1 cut(s)	573
BveI	ACCTGC	1 cut(s)	185
CfoI	GCGC	1 cut(s)	689
Cfr10I	RCCGGY	1 cut(s)	628
Cfr13I	GGNCC	2 cut(s)	131, 340
Csp6I	GTAC	4 cut(s)	226, 510, 531, 571
CspAI	ACCGGT	1 cut(s)	628
CviAII	CATG	1 cut(s)	656
CviQI	GTAC	4 cut(s)	226, 510, 531, 571
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	2 cut(s)	32, 734
DpnII	GATC	2 cut(s)	30, 732
EaeI	YGGCCR	1 cut(s)	554
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Eco147I	AGGCCT	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	340
EcoRII	CCWGG	2 cut(s)	432, 523
FaeI	CATG	1 cut(s)	659
FaiI	YATR	4 cut(s)	294, 369, 591, 657
FatI	CATG	1 cut(s)	655
FbaI	TGATCA	1 cut(s)	30
FblI	GTMKAC	1 cut(s)	660
Fnu4HI	GCNGC	2 cut(s)	394, 397
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	2 cut(s)	394, 397
FspBI	CTAG	1 cut(s)	579
GlaI	GCGC	1 cut(s)	688
GluI	GCNGC	2 cut(s)	394, 397
HaeIII	GGCC	4 cut(s)	46, 133, 491, 556
HapII	CCGG	4 cut(s)	129, 557, 605, 629
HhaI	GCGC	1 cut(s)	689
Hin1II	CATG	1 cut(s)	659
Hin6I	GCGC	1 cut(s)	687
HinP1I	GCGC	1 cut(s)	687
HinfI	GANTC	3 cut(s)	149, 540, 667
HpaII	CCGG	4 cut(s)	129, 557, 605, 629
HphI	GGTGA	3 cut(s)	31, 40, 436
Hpy166II	GTNNAC	3 cut(s)	88, 573, 661
Hpy188I	TCNGA	4 cut(s)	35, 148, 334, 732
Hpy8I	GTNNAC	3 cut(s)	88, 573, 661
Hpy99I	CGWCG	2 cut(s)	166, 169
HpyAV	CCTTC	3 cut(s)	61, 103, 737
HpyCH4III	ACNGT	3 cut(s)	85, 300, 340
HpyCH4IV	ACGT	2 cut(s)	114, 663
HpyF3I	CTNAG	1 cut(s)	441
HpySE526I	ACGT	2 cut(s)	114, 663
Hsp92II	CATG	1 cut(s)	659
HspAI	GCGC	1 cut(s)	687
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	30, 732
LguI	GCTCTTC	1 cut(s)	422
LmnI	GCTCC	3 cut(s)	520, 593, 613
Lsp1109I	GCAGC	2 cut(s)	405, 408
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	1 cut(s)	579
MaeII	ACGT	2 cut(s)	114, 663
MalI	GATC	2 cut(s)	32, 734
MboI	GATC	2 cut(s)	30, 732
MboII	GAAGA	5 cut(s)	88, 197, 439, 549, 713
MhlI	GDGCHC	1 cut(s)	598
MluCI	AATT	4 cut(s)	400, 409, 455, 710
MluI	ACGCGT	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	2 cut(s)	171, 352
MnlI	CCTC	8 cut(s)	36, 115, 144, 167, 214, 481, 502, 575
MseI	TTAA	2 cut(s)	708, 740
MspI	CCGG	4 cut(s)	129, 557, 605, 629
MspR9I	CCNGG	5 cut(s)	130, 434, 525, 558, 605
MvaI	CCWGG	2 cut(s)	434, 525
MvnI	CGCG	2 cut(s)	230, 636
NciI	CCSGG	3 cut(s)	130, 558, 605
NdeII	GATC	2 cut(s)	30, 732
NlaIII	CATG	1 cut(s)	659
NlaIV	GGNNCC	3 cut(s)	196, 522, 609
NspV	TTCGAA	1 cut(s)	670
PaqCI	CACCTGC	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	491
PciSI	GCTCTTC	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	540, 667
PinAI	ACCGGT	1 cut(s)	628
PkrI	GCNGC	2 cut(s)	395, 398
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Ppu21I	YACGTR	1 cut(s)	115
Psp6I	CCWGG	2 cut(s)	432, 523
PspGI	CCWGG	2 cut(s)	432, 523
PspN4I	GGNNCC	3 cut(s)	196, 522, 609
PspPI	GGNCC	2 cut(s)	131, 340
RsaI	GTAC	4 cut(s)	227, 511, 532, 572
RsaNI	GTAC	4 cut(s)	226, 510, 531, 571
SapI	GCTCTTC	1 cut(s)	422
SaqAI	TTAA	2 cut(s)	708, 740
SatI	GCNGC	2 cut(s)	394, 397
Sau3AI	GATC	2 cut(s)	30, 732
Sau96I	GGNCC	2 cut(s)	131, 340
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	5 cut(s)	130, 434, 525, 558, 605
SduI	GDGCHC	1 cut(s)	598
SfaNI	GCATC	1 cut(s)	298
SfuI	TTCGAA	1 cut(s)	670
SinI	GGWCC	1 cut(s)	340
SmlI	CTYRAG	3 cut(s)	318, 472, 493
SmoI	CTYRAG	3 cut(s)	318, 472, 493
Sse9I	AATT	4 cut(s)	400, 409, 455, 710
SseBI	AGGCCT	1 cut(s)	491
SsiI	CCGC	2 cut(s)	26, 55
SspMI	CTAG	1 cut(s)	579
StuI	AGGCCT	1 cut(s)	491
StyD4I	CCNGG	5 cut(s)	128, 432, 523, 556, 603
TaaI	ACNGT	3 cut(s)	85, 300, 340
TaiI	ACGT	2 cut(s)	117, 666
TaqI	TCGA	1 cut(s)	670
TasI	AATT	4 cut(s)	400, 409, 455, 710
TatI	WGTACW	2 cut(s)	509, 570
TfiI	GAWTC	2 cut(s)	540, 667
Tru1I	TTAA	2 cut(s)	708, 740
Tru9I	TTAA	2 cut(s)	708, 740
TscAI	CASTG	1 cut(s)	580
TseI	GCWGC	2 cut(s)	393, 396
TspDTI	ATGAA	2 cut(s)	198, 644
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	1 cut(s)	580
VpaK11BI	GGWCC	1 cut(s)	340
XapI	RAATTY	1 cut(s)	409
XmiI	GTMKAC	1 cut(s)	660
XspI	CTAG	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.