Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Forward (+)

39976816 .. 39998732

Gene Structure 21917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG223400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCAACCTTGCAGCTTCAACGTGCAAGGAGGAAGGAGGATGACCCCGATGAGTGTCGGGAGGAAGTGGGTATTGAGAAATGGAACAAGCTCGAGAACAAGTATGTATTCGTGTATTTGAACCCGAAAAAGGGTTCGAAGAAGTTGTTTAGAGCAACTTATATTCTGTTTCATTCTCATAATACTTTTTCTTTAGGCCTATCAAATACCATGCATTCTATGAGTGGTTATGAAAAACTAATCGTAAGCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

84

Amino Acids

9.9

Weight (kDa)

9.33

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	2 cut(s)	130, 131
AgsI	TTSAA	2 cut(s)	20, 121
AluBI	AGCT	2 cut(s)	16, 91
AluI	AGCT	2 cut(s)	16, 91
Ama87I	CYCGRG	1 cut(s)	92
AoxI	GGCC	1 cut(s)	196
ApeKI	GCWGC	1 cut(s)	13
AsuII	TTCGAA	1 cut(s)	137
AvaI	CYCGRG	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	25
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	92
Bpu14I	TTCGAA	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 131
Bse1I	ACTGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	2 cut(s)	130, 131
BseNI	ACTGG	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	25
BshFI	GGCC	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	92
BslI	CCNNNNNNNGG	2 cut(s)	130, 131
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	198
BsoBI	CYCGRG	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	137
BspANI	GGCC	1 cut(s)	198
BspT104I	TTCGAA	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	250
BstBI	TTCGAA	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	46
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	4 cut(s)	16, 91, 198, 249
CviKI_1	RGCY	4 cut(s)	16, 91, 198, 249
Eco147I	AGGCCT	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	92
EcoT22I	ATGCAT	1 cut(s)	216
FaeI	CATG	1 cut(s)	214
FaiI	YATR	6 cut(s)	105, 162, 180, 212, 221, 231
FatI	CATG	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	14
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	14
GluI	GCNGC	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	214
Hpy188III	TCNNGA	2 cut(s)	59, 94
HpyAV	CCTTC	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	3 cut(s)	13, 26, 214
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	214
Lsp1109I	GCAGC	1 cut(s)	25
MaeII	ACGT	1 cut(s)	22
MboII	GAAGA	1 cut(s)	151
MnlI	CCTC	3 cut(s)	24, 31, 55
Mph1103I	ATGCAT	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	214
NlaIII	CATG	1 cut(s)	214
NsiI	ATGCAT	1 cut(s)	216
NspV	TTCGAA	1 cut(s)	137
PaeR7I	CTCGAG	1 cut(s)	92
PceI	AGGCCT	1 cut(s)	198
PctI	GAATGC	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	15
SatI	GCNGC	1 cut(s)	14
SetI	ASST	4 cut(s)	11, 18, 25, 93
Sfr274I	CTCGAG	1 cut(s)	92
SfuI	TTCGAA	1 cut(s)	137
SlaI	CTCGAG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
SseBI	AGGCCT	1 cut(s)	198
StuI	AGGCCT	1 cut(s)	198
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	2 cut(s)	93, 137
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	161, 246
XhoI	CTCGAG	1 cut(s)	92
Zsp2I	ATGCAT	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.