Rh5DG415700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
66135910 .. 66136329
420 bp
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UTR
Exon/CDS
Intron
Rh5DG415700.1

Sequence Viewer

Length: 420 bp
ATGAAGCGATTTGGAAGGATCAAAAGCCAATGCAACACTCAAGAGCCTTTTGGGTACGGGTTTAGGAGAGGGAGGTGGAAGAGCTATTTCCGAGAATCGGCTAGTTGTGGGATTGACAACATAGAATTTGCTGGGGATTGTGAATTCATCTGTGGAGGAACAACACAAGAGCAAGCCATTGCAGGACTGAAGAATCTGGAGGCCTTGTGGGTCGGGGATGAAATTGAGAGGTTTGGATGGGTTTGGATTGGTGTTTGGAAGGAGGGAGATGAATTGGGGGTCTGTTGTGGCGGTTCTGCTCAAGAAGAAGGCGGAGGGGAATTTAAGGATTGGGTTTCGGAGGGTGTGGGAGTCGCAGAATTTGGGGCTGGAGATGAGAGAGAGCCAAAGCTTAGAGACGCATTTGAAGCGGGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.38

Weight (kDa)

4.6

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 291, 312, 410
AclWI GGATC 1 cut(s) 26
AcsI RAATTY 4 cut(s) 125, 143, 320, 359
AcuI CTGAAG 1 cut(s) 209
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 1 cut(s) 407
AluBI AGCT 2 cut(s) 84, 391
AluI AGCT 2 cut(s) 84, 391
Alw26I GTCTC 1 cut(s) 390
AlwI GGATC 1 cut(s) 26
AoxI GGCC 1 cut(s) 201
ApoI RAATTY 4 cut(s) 125, 143, 320, 359
BccI CCATC 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 390
BfaI CTAG 1 cut(s) 102
BpmI CTGGAG 2 cut(s) 218, 390
BpuEI CTTGAG 2 cut(s) 24, 285
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 177
BseGI GGATG 2 cut(s) 223, 242
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 177
BseYI CCCAGC 1 cut(s) 131
BshFI GGCC 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 390
BsmBI CGTCTC 1 cut(s) 390
BsnI GGCC 1 cut(s) 203
Bsp143I GATC 1 cut(s) 18
BspACI CCGC 3 cut(s) 291, 312, 410
BspANI GGCC 1 cut(s) 203
BspPI GGATC 1 cut(s) 26
BspQI GCTCTTC 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 177
BssMI GATC 1 cut(s) 18
Bst6I CTCTTC 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 392
BstF5I GGATG 2 cut(s) 223, 242
BstKTI GATC 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 390
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 407
BsuRI GGCC 1 cut(s) 203
BtsCI GGATG 2 cut(s) 223, 242
Cac8I GCNNGC 1 cut(s) 174
CseI GACGC 1 cut(s) 407
Csp6I GTAC 1 cut(s) 55
CviJI RGCY 9 cut(s) 27, 46, 84, 101, 176, 203, 368, 385, 391
CviKI_1 RGCY 9 cut(s) 27, 46, 84, 101, 176, 203, 368, 385, 391
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 1 cut(s) 392
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
EciI GGCGGA 1 cut(s) 327
Eco147I AGGCCT 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 209
EcoRI GAATTC 1 cut(s) 143
Esp3I CGTCTC 1 cut(s) 390
FaiI YATR 1 cut(s) 122
FauI CCCGC 1 cut(s) 403
FokI GGATG 2 cut(s) 230, 249
FspBI CTAG 1 cut(s) 102
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 2 cut(s) 218, 390
HaeIII GGCC 1 cut(s) 203
HgaI GACGC 1 cut(s) 407
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 3 cut(s) 95, 193, 351
Hpy188I TCNGA 2 cut(s) 92, 340
Hpy188III TCNNGA 3 cut(s) 41, 197, 302
HpyAV CCTTC 3 cut(s) 9, 253, 302
HpyCH4V TGCA 2 cut(s) 33, 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpyF3I CTNAG 1 cut(s) 392
Kzo9I GATC 1 cut(s) 18
LguI GCTCTTC 1 cut(s) 74
LpnPI CCDG 4 cut(s) 117, 168, 182, 354
MaeI CTAG 1 cut(s) 102
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 3 cut(s) 91, 202, 317
MluCI AATT 6 cut(s) 125, 143, 222, 272, 320, 359
MlyI GAGTC 1 cut(s) 360
MnlI CCTC 8 cut(s) 62, 66, 149, 193, 222, 256, 308, 334
MseI TTAA 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 407
NdeII GATC 1 cut(s) 18
PceI AGGCCT 1 cut(s) 203
PciSI GCTCTTC 1 cut(s) 74
PfeI GAWTC 2 cut(s) 95, 193
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
PspFI CCCAGC 1 cut(s) 131
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SapI GCTCTTC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 324
Sau3AI GATC 1 cut(s) 18
SchI GAGTC 1 cut(s) 360
SetI ASST 4 cut(s) 77, 86, 233, 393
SmlI CTYRAG 2 cut(s) 39, 300
SmoI CTYRAG 2 cut(s) 39, 300
Sse9I AATT 6 cut(s) 125, 143, 222, 272, 320, 359
SseBI AGGCCT 1 cut(s) 203
SsiI CCGC 3 cut(s) 291, 312, 410
SspMI CTAG 1 cut(s) 102
StuI AGGCCT 1 cut(s) 203
TasI AATT 6 cut(s) 125, 143, 222, 272, 320, 359
TfiI GAWTC 2 cut(s) 95, 193
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TspDTI ATGAA 4 cut(s) 17, 136, 234, 285
XapI RAATTY 4 cut(s) 125, 143, 320, 359
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.