Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Forward (+)

19985087 .. 19987377

Gene Structure 2291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCGAATTCTCAGACGGTGATGGCTATGATCAGGTTGGCTAGACCTCCTTTCCGCAACAATCACGATAAGGTTGCTTTCGCTATTCACTCTTCTTTCGTCGCTTCCGGTTATATCCTCACCGCCACCGGACGGCCTGCTTTCGCCGACGAGGCTCTCTCTTCGTCTTCTCAGAATGATGTTGGAATCGAAGGATGGAACGAATTCGAGGGAGAGTATGCGTTTGTCTATGCGAATCCGAAGAAAGGGTCAAAGAAAATTCTGGTTAAGTGTTTGGCGATGGATGATAAACTTCTTGTTGATGCCATAGCTGATGGTGGAGCAGAACCTGCTCATCTTGAGATTAAAGTTGGGGATTATGCTGAGGAAAGCAATGAGGGGGATTACTCTGCGCAGTTCAAGAATTTGGATAAGTTAGTGACTGATTTGCAGAGTGAGATTATCGATAAGCTTGATGGAAAACCAAAACCTGTTGCTTCGAGAGCACAGTCCAGCTCTGAGACTAATGAAGAGCCTAGATATTACGATGATACGCCTAATCCATTAGGCCCTCAGATTCACCCCTCAGGCGTGGTAGTTCCTCCGATACCTGGTAATGGTGGTTACAGTGATCTCTTCCCTGGCCCAGGTGCTGGAATGTACCCTGGCAGGGGTGGTTTTGGGGATGGAAGCATGCTTGTAGGACCTACTGATCCTCGCTTTTTCCCATTTGGTGATGGTTCTGATCGACCTGGCTTCATGGGACCACCACACCCGGGTATGCCACCTCCTGGTGCGCGTTTTGATCCTTATGGTCCACCCGGTGTTCCAGGTTTTGAGCCAGGCCGGTTCACAAGACAACCTCCAAGAGGGCCAGGAGGTGGGCATCCAGACCTCGAGCATTTTCCCGGCGGTTCAGATTTTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

302

Amino Acids

32.12

Weight (kDa)

4.94

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI31_Prot_N	PF11566	15 - 154	3.6e-29	PI31 proteasome regulator N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	393
Acc36I	ACCTGC	1 cut(s)	337
AccB7I	CCANNNNNTGG	3 cut(s)	632, 770, 860
AccII	CGCG	1 cut(s)	778
AciI	CCGC	3 cut(s)	55, 123, 891
AclWI	GGATC	2 cut(s)	686, 779
AcsI	RAATTY	4 cut(s)	7, 203, 258, 403
AdeI	CACNNNGTG	1 cut(s)	803
AfaI	GTAC	1 cut(s)	641
AgsI	TTSAA	1 cut(s)	400
AjnI	CCWGG	9 cut(s)	589, 619, 625, 643, 730, 769, 808, 820, 853
AluBI	AGCT	3 cut(s)	311, 451, 495
AluI	AGCT	3 cut(s)	311, 451, 495
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	1 cut(s)	494
AlwI	GGATC	2 cut(s)	686, 779
AlwNI	CAGNNNCTG	2 cut(s)	329, 632
Ama87I	CYCGRG	2 cut(s)	754, 875
AoxI	GGCC	5 cut(s)	134, 547, 622, 823, 851
ApoI	RAATTY	4 cut(s)	7, 203, 258, 403
ArsI	GACNNNNNNTTYG	2 cut(s)	233, 265
Asp700I	GAANNNNTTC	1 cut(s)	203
AspLEI	GCGC	2 cut(s)	394, 778
AspS9I	GGNCC	6 cut(s)	548, 623, 683, 743, 794, 851
AsuC2I	CCSGG	4 cut(s)	755, 756, 801, 888
AsuHPI	GGTGA	4 cut(s)	31, 112, 551, 725
AvaI	CYCGRG	2 cut(s)	754, 875
AvaII	GGWCC	3 cut(s)	683, 743, 794
AxyI	CCTNAGG	1 cut(s)	565
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	487
BbvCI	CCTCAGC	1 cut(s)	363
BccI	CCATC	7 cut(s)	16, 189, 274, 308, 449, 659, 710
BceAI	ACGGC	1 cut(s)	149
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	9 cut(s)	591, 621, 627, 645, 732, 771, 810, 822, 855
BclI	TGATCA	1 cut(s)	30
BcnI	CCSGG	4 cut(s)	755, 756, 801, 888
BcoDI	GTCTC	1 cut(s)	494
BfaI	CTAG	2 cut(s)	42, 516
BfuAI	ACCTGC	1 cut(s)	337
BglI	GCCNNNNNGGC	1 cut(s)	152
Bme18I	GGWCC	3 cut(s)	683, 743, 794
BmeT110I	CYCGRG	2 cut(s)	754, 875
BmgT120I	GGNCC	6 cut(s)	548, 623, 683, 743, 794, 851
BmiI	GGNNCC	1 cut(s)	744
BmsI	GCATC	2 cut(s)	292, 874
BpiI	GAAGAC	1 cut(s)	159
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
Bpu10I	CCTNAGC	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	4 cut(s)	755, 756, 801, 888
Bsa29I	ATCGAT	1 cut(s)	444
BsaJI	CCNNGG	4 cut(s)	619, 625, 643, 754
BsaWI	WCCGGW	2 cut(s)	107, 128
Bse118I	RCCGGY	1 cut(s)	825
Bse21I	CCTNAGG	1 cut(s)	565
Bse3DI	GCAATG	1 cut(s)	379
BseBI	CCWGG	9 cut(s)	591, 621, 627, 645, 732, 771, 810, 822, 855
BseCI	ATCGAT	1 cut(s)	444
BseDI	CCNNGG	4 cut(s)	619, 625, 643, 754
BseGI	GGATG	4 cut(s)	200, 289, 670, 865
BseMI	GCAATG	1 cut(s)	379
BseMII	CTCAG	6 cut(s)	26, 185, 354, 489, 566, 579
Bsh1236I	CGCG	1 cut(s)	778
BshFI	GGCC	5 cut(s)	136, 549, 624, 825, 853
BshVI	ATCGAT	1 cut(s)	444
BsiHKAI	GWGCWC	1 cut(s)	487
BsiHKCI	CYCGRG	2 cut(s)	754, 875
BsiSI	CCGG	6 cut(s)	108, 129, 755, 801, 826, 888
BslFI	GGGAC	1 cut(s)	756
BsmAI	GTCTC	1 cut(s)	494
BsmFI	GGGAC	1 cut(s)	756
BsnI	GGCC	5 cut(s)	136, 549, 624, 825, 853
BsoBI	CYCGRG	2 cut(s)	754, 875
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp143I	GATC	5 cut(s)	30, 610, 691, 724, 784
BspACI	CCGC	3 cut(s)	55, 123, 891
BspANI	GGCC	5 cut(s)	136, 549, 624, 825, 853
BspCNI	CTCAG	6 cut(s)	25, 184, 355, 490, 565, 578
BspDI	ATCGAT	1 cut(s)	444
BspFNI	CGCG	1 cut(s)	778
BspLI	GGNNCC	1 cut(s)	744
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	2 cut(s)	686, 779
BspQI	GCTCTTC	1 cut(s)	504
BsrDI	GCAATG	1 cut(s)	379
BsrFI	RCCGGY	1 cut(s)	825
BssAI	RCCGGY	1 cut(s)	825
BssECI	CCNNGG	4 cut(s)	619, 625, 643, 754
BssMI	GATC	5 cut(s)	30, 610, 691, 724, 784
Bst2UI	CCWGG	9 cut(s)	591, 621, 627, 645, 732, 771, 810, 822, 855
Bst4CI	ACNGT	3 cut(s)	19, 489, 608
Bst6I	CTCTTC	4 cut(s)	97, 166, 504, 620
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	138, 674
BstDEI	CTNAG	6 cut(s)	12, 171, 363, 498, 552, 565
BstENI	CCTNNNNNAGG	2 cut(s)	624, 846
BstF5I	GGATG	4 cut(s)	200, 289, 670, 865
BstFNI	CGCG	1 cut(s)	778
BstHHI	GCGC	2 cut(s)	394, 778
BstKTI	GATC	5 cut(s)	33, 613, 694, 727, 787
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	5 cut(s)	30, 610, 691, 724, 784
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 329, 482
BstNI	CCWGG	9 cut(s)	591, 621, 627, 645, 732, 771, 810, 822, 855
BstNSI	RCATGY	1 cut(s)	676
BstUI	CGCG	1 cut(s)	778
BstV2I	GAAGAC	1 cut(s)	159
Bsu15I	ATCGAT	1 cut(s)	444
Bsu36I	CCTNAGG	1 cut(s)	565
BsuRI	GGCC	5 cut(s)	136, 549, 624, 825, 853
BsuTUI	ATCGAT	1 cut(s)	444
BtgZI	GCGATG	1 cut(s)	293
BtsCI	GGATG	4 cut(s)	200, 289, 670, 865
BtsIMutI	CAGTG	1 cut(s)	613
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	138, 674
CaiI	CAGNNNCTG	2 cut(s)	329, 632
CfoI	GCGC	2 cut(s)	394, 778
Cfr10I	RCCGGY	1 cut(s)	825
Cfr13I	GGNCC	6 cut(s)	548, 623, 683, 743, 794, 851
Cfr9I	CCCGGG	1 cut(s)	754
ClaI	ATCGAT	1 cut(s)	444
CsiI	ACCWGGT	1 cut(s)	589
Csp6I	GTAC	1 cut(s)	640
CviAII	CATG	2 cut(s)	673, 739
CviQI	GTAC	1 cut(s)	640
DdeI	CTNAG	6 cut(s)	12, 171, 363, 498, 552, 565
DpnI	GATC	5 cut(s)	32, 612, 693, 726, 786
DpnII	GATC	5 cut(s)	30, 610, 691, 724, 784
DraIII	CACNNNGTG	1 cut(s)	803
Eam1104I	CTCTTC	4 cut(s)	97, 166, 504, 620
EarI	CTCTTC	4 cut(s)	97, 166, 504, 620
Eco47I	GGWCC	3 cut(s)	683, 743, 794
Eco81I	CCTNAGG	1 cut(s)	565
Eco88I	CYCGRG	2 cut(s)	754, 875
EcoNI	CCTNNNNNAGG	2 cut(s)	624, 846
EcoO109I	RGGNCCY	2 cut(s)	548, 683
EcoRI	GAATTC	2 cut(s)	7, 203
EcoRII	CCWGG	9 cut(s)	589, 619, 625, 643, 730, 769, 808, 820, 853
FaeI	CATG	2 cut(s)	676, 742
FaqI	GGGAC	1 cut(s)	756
FatI	CATG	2 cut(s)	672, 738
FbaI	TGATCA	1 cut(s)	30
FokI	GGATG	4 cut(s)	207, 296, 677, 852
FspBI	CTAG	2 cut(s)	42, 516
FspI	TGCGCA	1 cut(s)	393
GlaI	GCGC	2 cut(s)	393, 777
HaeIII	GGCC	5 cut(s)	136, 549, 624, 825, 853
HapII	CCGG	6 cut(s)	108, 129, 755, 801, 826, 888
HhaI	GCGC	2 cut(s)	394, 778
Hin1II	CATG	2 cut(s)	676, 742
Hin6I	GCGC	2 cut(s)	392, 776
HinP1I	GCGC	2 cut(s)	392, 776
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	3 cut(s)	186, 235, 556
HpaII	CCGG	6 cut(s)	108, 129, 755, 801, 826, 888
HphI	GGTGA	4 cut(s)	31, 112, 551, 725
Hpy166II	GTNNAC	2 cut(s)	797, 831
Hpy188I	TCNGA	8 cut(s)	15, 174, 240, 499, 555, 585, 724, 898
Hpy188III	TCNNGA	5 cut(s)	65, 338, 400, 480, 869
Hpy8I	GTNNAC	2 cut(s)	797, 831
Hpy99I	CGWCG	2 cut(s)	104, 152
HpyAV	CCTTC	1 cut(s)	185
HpyCH4III	ACNGT	3 cut(s)	19, 489, 608
HpyCH4V	TGCA	1 cut(s)	430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 329, 482
HpyF3I	CTNAG	6 cut(s)	12, 171, 363, 498, 552, 565
Hsp92II	CATG	2 cut(s)	676, 742
HspAI	GCGC	2 cut(s)	392, 776
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	5 cut(s)	30, 610, 691, 724, 784
LguI	GCTCTTC	1 cut(s)	504
LmnI	GCTCC	1 cut(s)	320
LweI	GCATC	2 cut(s)	292, 874
MabI	ACCWGGT	1 cut(s)	589
MaeI	CTAG	2 cut(s)	42, 516
MaeIII	GTNAC	2 cut(s)	418, 602
MalI	GATC	5 cut(s)	32, 612, 693, 726, 786
MboI	GATC	5 cut(s)	30, 610, 691, 724, 784
MboII	GAAGA	6 cut(s)	84, 153, 159, 253, 521, 607
MhlI	GDGCHC	1 cut(s)	487
MluCI	AATT	4 cut(s)	7, 203, 258, 403
MmeI	TCCRAC	1 cut(s)	163
MroXI	GAANNNNTTC	1 cut(s)	203
MseI	TTAA	2 cut(s)	267, 345
MspI	CCGG	6 cut(s)	108, 129, 755, 801, 826, 888
MvaI	CCWGG	9 cut(s)	591, 621, 627, 645, 732, 771, 810, 822, 855
MvnI	CGCG	1 cut(s)	778
MwoI	GCNNNNNNNGC	3 cut(s)	152, 329, 482
NciI	CCSGG	4 cut(s)	755, 756, 801, 888
NdeII	GATC	5 cut(s)	30, 610, 691, 724, 784
NlaIII	CATG	2 cut(s)	676, 742
NlaIV	GGNNCC	1 cut(s)	744
NmuCI	GTSAC	1 cut(s)	418
NsbI	TGCGCA	1 cut(s)	393
NspI	RCATGY	1 cut(s)	676
PaeI	GCATGC	1 cut(s)	676
PaeR7I	CTCGAG	1 cut(s)	875
PciSI	GCTCTTC	1 cut(s)	504
PdmI	GAANNNNTTC	1 cut(s)	203
PfeI	GAWTC	3 cut(s)	186, 235, 556
PflMI	CCANNNNNTGG	3 cut(s)	632, 770, 860
PpuMI	RGGWCCY	1 cut(s)	683
Psp5II	RGGWCCY	1 cut(s)	683
Psp6I	CCWGG	9 cut(s)	589, 619, 625, 643, 730, 769, 808, 820, 853
PspGI	CCWGG	9 cut(s)	589, 619, 625, 643, 730, 769, 808, 820, 853
PspN4I	GGNNCC	1 cut(s)	744
PspPI	GGNCC	6 cut(s)	548, 623, 683, 743, 794, 851
PspPPI	RGGWCCY	1 cut(s)	683
PspXI	VCTCGAGB	1 cut(s)	875
PstNI	CAGNNNCTG	2 cut(s)	329, 632
RsaI	GTAC	1 cut(s)	641
RsaNI	GTAC	1 cut(s)	640
SapI	GCTCTTC	1 cut(s)	504
SaqAI	TTAA	2 cut(s)	267, 345
Sau3AI	GATC	5 cut(s)	30, 610, 691, 724, 784
Sau96I	GGNCC	6 cut(s)	548, 623, 683, 743, 794, 851
SduI	GDGCHC	1 cut(s)	487
SexAI	ACCWGGT	1 cut(s)	589
SfaNI	GCATC	2 cut(s)	292, 874
Sfr274I	CTCGAG	1 cut(s)	875
SinI	GGWCC	3 cut(s)	683, 743, 794
SlaI	CTCGAG	1 cut(s)	875
SmaI	CCCGGG	1 cut(s)	756
SmlI	CTYRAG	2 cut(s)	338, 875
SmoI	CTYRAG	2 cut(s)	338, 875
SphI	GCATGC	1 cut(s)	676
Sse9I	AATT	4 cut(s)	7, 203, 258, 403
SsiI	CCGC	3 cut(s)	55, 123, 891
SspMI	CTAG	2 cut(s)	42, 516
TaaI	ACNGT	3 cut(s)	19, 489, 608
TaqI	TCGA	6 cut(s)	189, 207, 444, 479, 727, 876
TasI	AATT	4 cut(s)	7, 203, 258, 403
TfiI	GAWTC	3 cut(s)	186, 235, 556
Tru1I	TTAA	2 cut(s)	267, 345
Tru9I	TTAA	2 cut(s)	267, 345
TscAI	CASTG	1 cut(s)	613
TseFI	GTSAC	1 cut(s)	418
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	2 cut(s)	522, 727
TspMI	CCCGGG	1 cut(s)	754
TspRI	CASTG	1 cut(s)	613
Van91I	CCANNNNNTGG	3 cut(s)	632, 770, 860
VpaK11BI	GGWCC	3 cut(s)	683, 743, 794
XagI	CCTNNNNNAGG	2 cut(s)	624, 846
XapI	RAATTY	4 cut(s)	7, 203, 258, 403
XceI	RCATGY	1 cut(s)	676
XhoI	CTCGAG	1 cut(s)	875
XmaI	CCCGGG	1 cut(s)	754
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	2 cut(s)	42, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.