Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Forward (+)

5814769 .. 5815736

Gene Structure 968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0073600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGTGGAGGAGATCCAGTACCGCTCCTATGCGGGAACTGGCCGGAACCTAGAGATGGTGAACGTGAGGAGATTAACCGAAAACTACAGCACAATGTACGTAGACAGGTACAATTCATCTCAGTACTTGTCATGGGCTCCTCCTTCTGTTAATCCTCCTCCCTTCCTTATAGAAAGGGTTAGACGACGACAACAACAACGTGATGAAAGCCGGTTTGGGAAGGCAGAGCCAAATAGAGAGGTGCTGGAGGTGCCTAGGTCGAAGAATAAGCCGTTCAAATTGTGGTGGAATGATGCAGAGATTAAGAGAAGAGGAAGGGTTGCTAAATATAAGTTGTATGGTGCTGAAGGGAAGATGAAGATGTCGTTGAAGAAAGGGTACCGCTGGTTCAAGAAGAAATGCCTTGAAATTGGCCCTATTACTAACTTGAGATTTAAGGTCATGCATAGAGCATCATTTTACGAAATTGAAGATATCGACCGCGACCACACTATGCGATGTGATCCTCTAGACTTTAGTCATGCAACCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

177

Amino Acids

21.26

Weight (kDa)

9.9

Isoelectric Point (pI)

65.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3511	PF12023	96 - 137	7.2e-20	Domain of unknown function (DUF3511)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	378
AccB1I	GGYRCC	2 cut(s)	250, 378
AccBSI	CCGCTC	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	1 cut(s)	483
AciI	CCGC	4 cut(s)	22, 32, 382, 481
AclWI	GGATC	2 cut(s)	7, 497
AcoI	YGGCCR	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	5 cut(s)	20, 98, 110, 125, 380
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	5 cut(s)	277, 370, 391, 407, 470
AjuI	GAANNNNNNNTTGG	2 cut(s)	198, 230
AlwI	GGATC	2 cut(s)	7, 497
AoxI	GGCC	2 cut(s)	40, 412
Asp718I	GGTACC	1 cut(s)	378
AspA2I	CCTAGG	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	1 cut(s)	70
AvrII	CCTAGG	1 cut(s)	254
BanI	GGYRCC	2 cut(s)	250, 378
BanII	GRGCYC	1 cut(s)	139
BarI	GAAGNNNNNNTAC	2 cut(s)	362, 394
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	1 cut(s)	256
BfaI	CTAG	3 cut(s)	50, 255, 509
BfmI	CTRYAG	1 cut(s)	85
BlnI	CCTAGG	1 cut(s)	254
BmcAI	AGTACT	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	4 cut(s)	47, 138, 252, 380
BmsI	GCATC	2 cut(s)	283, 461
BoxI	GACNNNNGTC	1 cut(s)	516
BpmI	CTGGAG	1 cut(s)	266
BpuEI	CTTGAG	1 cut(s)	448
BsaAI	YACGTR	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	254
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse118I	RCCGGY	1 cut(s)	210
Bse1I	ACTGG	2 cut(s)	16, 43
BseDI	CCNNGG	1 cut(s)	254
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	2 cut(s)	16, 43
BseRI	GAGGAG	4 cut(s)	23, 82, 129, 147
Bsh1236I	CGCG	1 cut(s)	483
Bsh1285I	CGRYCG	1 cut(s)	481
BshFI	GGCC	2 cut(s)	42, 414
BshNI	GGYRCC	2 cut(s)	250, 378
BsiEI	CGRYCG	1 cut(s)	481
BsiSI	CCGG	2 cut(s)	43, 211
BslI	CCNNNNNNNGG	1 cut(s)	55
BsnI	GGCC	2 cut(s)	42, 414
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	2 cut(s)	12, 502
BspACI	CCGC	4 cut(s)	22, 32, 382, 481
BspANI	GGCC	2 cut(s)	42, 414
BspCNI	CTCAG	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	483
BspLI	GGNNCC	4 cut(s)	47, 138, 252, 380
BspPI	GGATC	2 cut(s)	7, 497
BspT107I	GGYRCC	2 cut(s)	250, 378
BsrBI	CCGCTC	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	16, 43
BssAI	RCCGGY	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	2 cut(s)	12, 502
BssT1I	CCWWGG	1 cut(s)	254
Bst6I	CTCTTC	1 cut(s)	304
BstBAI	YACGTR	1 cut(s)	100
BstDEI	CTNAG	1 cut(s)	120
BstFNI	CGCG	1 cut(s)	483
BstKTI	GATC	2 cut(s)	15, 505
BstMBI	GATC	2 cut(s)	12, 502
BstMCI	CGRYCG	1 cut(s)	481
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstPAI	GACNNNNGTC	1 cut(s)	516
BstSFI	CTRYAG	1 cut(s)	85
BstSNI	TACGTA	1 cut(s)	100
BstUI	CGCG	1 cut(s)	483
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	42, 414
BtgZI	GCGATG	1 cut(s)	511
Cfr10I	RCCGGY	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	413
Csp6I	GTAC	5 cut(s)	19, 97, 109, 124, 379
CviAII	CATG	3 cut(s)	132, 442, 521
CviJI	RGCY	6 cut(s)	42, 137, 210, 229, 271, 414
CviKI_1	RGCY	6 cut(s)	42, 137, 210, 229, 271, 414
CviQI	GTAC	5 cut(s)	19, 97, 109, 124, 379
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	2 cut(s)	14, 504
DpnII	GATC	2 cut(s)	12, 502
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	304
Eco105I	TACGTA	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	139
Eco32I	GATATC	1 cut(s)	475
Eco57I	CTGAAG	1 cut(s)	366
EcoRV	GATATC	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	254
FaeI	CATG	3 cut(s)	135, 445, 524
FaiI	YATR	9 cut(s)	30, 133, 170, 330, 339, 443, 447, 494, 522
FatI	CATG	3 cut(s)	131, 441, 520
FauI	CCCGC	1 cut(s)	25
FblI	GTMKAC	1 cut(s)	102
FriOI	GRGCYC	1 cut(s)	139
FspBI	CTAG	3 cut(s)	50, 255, 509
GsuI	CTGGAG	1 cut(s)	266
HaeIII	GGCC	2 cut(s)	42, 414
HapII	CCGG	2 cut(s)	43, 211
Hin1II	CATG	3 cut(s)	135, 445, 524
HpaII	CCGG	2 cut(s)	43, 211
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	2 cut(s)	61, 103
Hpy188III	TCNNGA	2 cut(s)	391, 509
Hpy8I	GTNNAC	2 cut(s)	61, 103
Hpy99I	CGWCG	1 cut(s)	189
HpyAV	CCTTC	5 cut(s)	153, 172, 214, 309, 341
HpyCH4IV	ACGT	3 cut(s)	63, 99, 199
HpyCH4V	TGCA	3 cut(s)	296, 445, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	3 cut(s)	63, 99, 199
Hsp92II	CATG	3 cut(s)	135, 445, 524
KpnI	GGTACC	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	12, 502
LmnI	GCTCC	2 cut(s)	29, 142
LpnPI	CCDG	7 cut(s)	24, 29, 56, 91, 224, 230, 370
LweI	GCATC	2 cut(s)	283, 461
MaeI	CTAG	3 cut(s)	50, 255, 509
MaeII	ACGT	3 cut(s)	63, 99, 199
MalI	GATC	2 cut(s)	14, 504
MbiI	CCGCTC	1 cut(s)	24
MboI	GATC	2 cut(s)	12, 502
MboII	GAAGA	7 cut(s)	274, 321, 364, 370, 382, 406, 482
MflI	RGATCY	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	5 cut(s)	112, 278, 408, 465, 529
MnlI	CCTC	8 cut(s)	60, 150, 165, 168, 232, 241, 305, 516
Mph1103I	ATGCAT	1 cut(s)	447
MseI	TTAA	5 cut(s)	74, 150, 303, 435, 532
MspA1I	CMGCKG	1 cut(s)	384
MspI	CCGG	2 cut(s)	43, 211
MvnI	CGCG	1 cut(s)	483
MwoI	GCNNNNNNNGC	1 cut(s)	250
NdeII	GATC	2 cut(s)	12, 502
NlaIII	CATG	3 cut(s)	135, 445, 524
NlaIV	GGNNCC	4 cut(s)	47, 138, 252, 380
NsiI	ATGCAT	1 cut(s)	447
Ppu21I	YACGTR	1 cut(s)	100
PshAI	GACNNNNGTC	1 cut(s)	516
PspN4I	GGNNCC	4 cut(s)	47, 138, 252, 380
PspPI	GGNCC	1 cut(s)	413
PsrI	GAACNNNNNNTAC	2 cut(s)	371, 403
PsuI	RGATCY	1 cut(s)	12
RsaI	GTAC	5 cut(s)	20, 98, 110, 125, 380
RsaNI	GTAC	5 cut(s)	19, 97, 109, 124, 379
SaqAI	TTAA	5 cut(s)	74, 150, 303, 435, 532
Sau3AI	GATC	2 cut(s)	12, 502
Sau96I	GGNCC	1 cut(s)	413
ScaI	AGTACT	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	9 cut(s)	51, 66, 102, 110, 202, 243, 252, 260, 441
SfaNI	GCATC	2 cut(s)	283, 461
SfcI	CTRYAG	1 cut(s)	85
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
SnaBI	TACGTA	1 cut(s)	100
Sse9I	AATT	5 cut(s)	112, 278, 408, 465, 529
SsiI	CCGC	4 cut(s)	22, 32, 382, 481
SspMI	CTAG	3 cut(s)	50, 255, 509
StyI	CCWWGG	1 cut(s)	254
TaiI	ACGT	3 cut(s)	66, 102, 202
TaqI	TCGA	2 cut(s)	260, 477
TasI	AATT	5 cut(s)	112, 278, 408, 465, 529
TatI	WGTACW	1 cut(s)	123
Tru1I	TTAA	5 cut(s)	74, 150, 303, 435, 532
Tru9I	TTAA	5 cut(s)	74, 150, 303, 435, 532
TspDTI	ATGAA	3 cut(s)	105, 219, 371
XbaI	TCTAGA	1 cut(s)	508
XmaJI	CCTAGG	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	3 cut(s)	50, 255, 509
ZrmI	AGTACT	1 cut(s)	125
Zsp2I	ATGCAT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.