Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Forward (+)

38127215 .. 38129519

Gene Structure 2305 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024677

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCGAACGACAAGTCGGTCATGGCCGTCATCCGAGCCGCACGCCCATCTTTCCGCAACGAAAACGACAAGGTCGCCTTTGCCGTTCACGCTTCCTTCGCCGCCTCCGGCTACGAAGTTGGATATCAACCTGGGCCTGGTGCTGGAAGGTATCCAGGTGGTGGTGATGATCTTTATCCTGGGGCTGGCGCTGGAATGTATCCTAGGTATCCAGTGGGTGGTAGCGATCTTTATCCTGGACCTGGTGCTGGAATGCCTTCTAGGGGTGCTTTTGACGATGGAAGCATGTTTGTTGGACCCAATGATCGTAGATTTGGGGACGTTGGACAACCTGGGTTTCCGGGGTTTCCTGGAGGACTACCGGGTATTCGTGATCCTCGGTTTGGTGCTGAAAGACCAGATGGTGTTCCTCCAGGTGCTCGCTTTGATCCATATGGGCCGCCTGGGCTTCCTGATTTTGATCCGGATTTTGCAAGGCGCCCACAGGGGCCAGGAAGCAGGATCCACCCTGACTTGGAGCAACCCGGGAGTGGTTCGGACTATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

183

Amino Acids

18.93

Weight (kDa)

5.08

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
AccB1I	GGYRCC	1 cut(s)	477
AccB7I	CCANNNNNTGG	2 cut(s)	161, 218
AccIII	TCCGGA	1 cut(s)	463
AciI	CCGC	4 cut(s)	39, 55, 102, 440
AclWI	GGATC	5 cut(s)	368, 422, 455, 496, 509
AcoI	YGGCCR	1 cut(s)	24
AcyI	GRCGYC	1 cut(s)	478
Alw21I	GWGCWC	1 cut(s)	421
AlwI	GGATC	5 cut(s)	368, 422, 455, 496, 509
Ama87I	CYCGRG	1 cut(s)	524
Aor13HI	TCCGGA	1 cut(s)	463
AoxI	GGCC	4 cut(s)	24, 134, 437, 488
ArsI	GACNNNNNNTTYG	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	256
AspA2I	CCTAGG	1 cut(s)	203
AspLEI	GCGC	2 cut(s)	191, 480
AspS9I	GGNCC	5 cut(s)	134, 239, 296, 437, 488
AsuC2I	CCSGG	4 cut(s)	342, 363, 525, 526
AsuHPI	GGTGA	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	524
AvaII	GGWCC	2 cut(s)	239, 296
AvrII	CCTAGG	1 cut(s)	203
BamHI	GGATCC	1 cut(s)	501
BanI	GGYRCC	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	421
BccI	CCATC	3 cut(s)	55, 272, 395
BceAI	ACGGC	2 cut(s)	11, 68
BciVI	GTATCC	3 cut(s)	162, 210, 219
BcnI	CCSGG	4 cut(s)	342, 363, 525, 526
BfaI	CTAG	3 cut(s)	204, 261, 547
BfoI	RGCGCY	2 cut(s)	192, 481
BfuI	GTATCC	3 cut(s)	162, 210, 219
BglI	GCCNNNNNGGC	1 cut(s)	445
BisI	GCNGC	3 cut(s)	39, 102, 440
BlnI	CCTAGG	1 cut(s)	203
BlsI	GCNGC	3 cut(s)	40, 103, 441
Bme18I	GGWCC	2 cut(s)	239, 296
BmeT110I	CYCGRG	1 cut(s)	524
BmgT120I	GGNCC	5 cut(s)	134, 239, 296, 437, 488
BmiI	GGNNCC	4 cut(s)	298, 479, 489, 503
BpmI	CTGGAG	2 cut(s)	372, 396
BpuMI	CCSGG	4 cut(s)	342, 363, 525, 526
BsaBI	GATNNNNATC	3 cut(s)	174, 231, 459
BsaHI	GRCGYC	1 cut(s)	478
BsaJI	CCNNGG	8 cut(s)	131, 179, 203, 332, 341, 377, 443, 524
BsaWI	WCCGGW	1 cut(s)	463
Bse1I	ACTGG	1 cut(s)	212
Bse8I	GATNNNNATC	3 cut(s)	174, 231, 459
BseAI	TCCGGA	1 cut(s)	463
BseDI	CCNNGG	8 cut(s)	131, 179, 203, 332, 341, 377, 443, 524
BseGI	GGATG	1 cut(s)	30
BseJI	GATNNNNATC	3 cut(s)	174, 231, 459
BseNI	ACTGG	1 cut(s)	212
BshFI	GGCC	4 cut(s)	26, 136, 439, 490
BshNI	GGYRCC	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	421
BsiHKCI	CYCGRG	1 cut(s)	524
BsiSI	CCGG	5 cut(s)	108, 341, 362, 464, 525
BslFI	GGGAC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	332
BsmI	GAATGC	1 cut(s)	258
BsnI	GGCC	4 cut(s)	26, 136, 439, 490
BsoBI	CYCGRG	1 cut(s)	524
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp13I	TCCGGA	1 cut(s)	463
Bsp143I	GATC	7 cut(s)	169, 226, 304, 373, 427, 460, 501
BspACI	CCGC	4 cut(s)	39, 55, 102, 440
BspANI	GGCC	4 cut(s)	26, 136, 439, 490
BspEI	TCCGGA	1 cut(s)	463
BspLI	GGNNCC	4 cut(s)	298, 479, 489, 503
BspPI	GGATC	5 cut(s)	368, 422, 455, 496, 509
BspT107I	GGYRCC	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	212
BssECI	CCNNGG	8 cut(s)	131, 179, 203, 332, 341, 377, 443, 524
BssMI	GATC	7 cut(s)	169, 226, 304, 373, 427, 460, 501
BssNI	GRCGYC	1 cut(s)	478
BssT1I	CCWWGG	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	478
BstC8I	GCNNGC	3 cut(s)	43, 187, 421
BstF5I	GGATG	1 cut(s)	30
BstH2I	RGCGCY	2 cut(s)	192, 481
BstHHI	GCGC	2 cut(s)	191, 480
BstKTI	GATC	7 cut(s)	172, 229, 307, 376, 430, 463, 504
BstMBI	GATC	7 cut(s)	169, 226, 304, 373, 427, 460, 501
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 98, 445
BstNSI	RCATGY	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	501
BstYI	RGATCY	1 cut(s)	501
BsuI	GTATCC	3 cut(s)	162, 210, 219
BsuRI	GGCC	4 cut(s)	26, 136, 439, 490
BtsCI	GGATG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	3 cut(s)	43, 187, 421
CfoI	GCGC	2 cut(s)	191, 480
Cfr13I	GGNCC	5 cut(s)	134, 239, 296, 437, 488
Cfr9I	CCCGGG	1 cut(s)	524
CsiI	ACCWGGT	1 cut(s)	241
CviAII	CATG	2 cut(s)	22, 286
CviJI	RGCY	8 cut(s)	26, 38, 111, 136, 185, 439, 448, 490
CviKI_1	RGCY	8 cut(s)	26, 38, 111, 136, 185, 439, 448, 490
DinI	GGCGCC	1 cut(s)	479
DpnI	GATC	7 cut(s)	171, 228, 306, 375, 429, 462, 503
DpnII	GATC	7 cut(s)	169, 226, 304, 373, 427, 460, 501
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	125
Eco47I	GGWCC	2 cut(s)	239, 296
Eco88I	CYCGRG	1 cut(s)	524
EcoRV	GATATC	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	203
EgeI	GGCGCC	1 cut(s)	479
EheI	GGCGCC	1 cut(s)	479
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	2 cut(s)	25, 289
FaiI	YATR	5 cut(s)	23, 287, 433, 435, 543
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	2 cut(s)	21, 285
FauNDI	CATATG	1 cut(s)	433
Fnu4HI	GCNGC	3 cut(s)	39, 102, 440
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	3 cut(s)	39, 102, 440
FspBI	CTAG	3 cut(s)	204, 261, 547
GlaI	GCGC	2 cut(s)	190, 479
GluI	GCNGC	3 cut(s)	39, 102, 440
GsuI	CTGGAG	2 cut(s)	372, 396
HaeII	RGCGCY	2 cut(s)	192, 481
HaeIII	GGCC	4 cut(s)	26, 136, 439, 490
HapII	CCGG	5 cut(s)	108, 341, 362, 464, 525
HhaI	GCGC	2 cut(s)	191, 480
Hin1I	GRCGYC	1 cut(s)	478
Hin1II	CATG	2 cut(s)	25, 289
Hin6I	GCGC	2 cut(s)	189, 478
HinP1I	GCGC	2 cut(s)	189, 478
HpaII	CCGG	5 cut(s)	108, 341, 362, 464, 525
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	35, 538
Hpy188III	TCNNGA	3 cut(s)	371, 452, 464
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	3 cut(s)	106, 141, 267
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	1 cut(s)	473
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 98, 445
HpySE526I	ACGT	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	478
Hsp92II	CATG	2 cut(s)	25, 289
HspAI	GCGC	2 cut(s)	189, 478
KasI	GGCGCC	1 cut(s)	477
Kpn2I	TCCGGA	1 cut(s)	463
Kzo9I	GATC	7 cut(s)	169, 226, 304, 373, 427, 460, 501
LmnI	GCTCC	1 cut(s)	517
MabI	ACCWGGT	1 cut(s)	241
MaeI	CTAG	3 cut(s)	204, 261, 547
MaeII	ACGT	1 cut(s)	321
MalI	GATC	7 cut(s)	171, 228, 306, 375, 429, 462, 503
MboI	GATC	7 cut(s)	169, 226, 304, 373, 427, 460, 501
MflI	RGATCY	1 cut(s)	501
MhlI	GDGCHC	1 cut(s)	421
Mly113I	GGCGCC	1 cut(s)	478
MmeI	TCCRAC	3 cut(s)	100, 274, 304
MnlI	CCTC	4 cut(s)	115, 347, 387, 420
MroI	TCCGGA	1 cut(s)	463
MroXI	GAANNNNTTC	1 cut(s)	256
MspI	CCGG	5 cut(s)	108, 341, 362, 464, 525
Mva1269I	GAATGC	1 cut(s)	258
MwoI	GCNNNNNNNGC	3 cut(s)	89, 98, 445
NarI	GGCGCC	1 cut(s)	478
NciI	CCSGG	4 cut(s)	342, 363, 525, 526
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	7 cut(s)	169, 226, 304, 373, 427, 460, 501
NlaIII	CATG	2 cut(s)	25, 289
NlaIV	GGNNCC	4 cut(s)	298, 479, 489, 503
NspI	RCATGY	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	1 cut(s)	258
PdmI	GAANNNNTTC	1 cut(s)	256
PflFI	GACNNNGTC	1 cut(s)	71
PflMI	CCANNNNNTGG	2 cut(s)	161, 218
PfoI	TCCNGGA	2 cut(s)	235, 349
PkrI	GCNGC	3 cut(s)	40, 103, 441
PluTI	GGCGCC	1 cut(s)	481
PspN4I	GGNNCC	4 cut(s)	298, 479, 489, 503
PspPI	GGNCC	5 cut(s)	134, 239, 296, 437, 488
PsuI	RGATCY	1 cut(s)	501
PsyI	GACNNNGTC	1 cut(s)	71
SatI	GCNGC	3 cut(s)	39, 102, 440
Sau3AI	GATC	7 cut(s)	169, 226, 304, 373, 427, 460, 501
Sau96I	GGNCC	5 cut(s)	134, 239, 296, 437, 488
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	9 cut(s)	75, 133, 152, 160, 209, 244, 324, 334, 418
SexAI	ACCWGGT	1 cut(s)	241
SfoI	GGCGCC	1 cut(s)	479
SinI	GGWCC	2 cut(s)	239, 296
SmaI	CCCGGG	1 cut(s)	526
SsiI	CCGC	4 cut(s)	39, 55, 102, 440
SspDI	GGCGCC	1 cut(s)	477
SspMI	CTAG	3 cut(s)	204, 261, 547
StyI	CCWWGG	1 cut(s)	203
TaiI	ACGT	1 cut(s)	324
TaqII	GACCGA	1 cut(s)	7
TauI	GCSGC	3 cut(s)	41, 104, 442
TscAI	CASTG	1 cut(s)	219
TspMI	CCCGGG	1 cut(s)	524
TspRI	CASTG	1 cut(s)	219
Tth111I	GACNNNGTC	1 cut(s)	71
Van91I	CCANNNNNTGG	2 cut(s)	161, 218
VpaK11BI	GGWCC	2 cut(s)	239, 296
XceI	RCATGY	1 cut(s)	289
XmaI	CCCGGG	1 cut(s)	524
XmaJI	CCTAGG	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	256
XspI	CTAG	3 cut(s)	204, 261, 547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.