Proteasome
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PI31_Prot_N | PF11566 | 15 - 153 | 8.9e-26 | PI31 proteasome regulator N-terminal |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 761 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 71 |
| Acc36I | ACCTGC | 1 cut(s) | 761 |
| AccBSI | CCGCTC | 2 cut(s) | 155, 906 |
| AccI | GTMKAC | 1 cut(s) | 660 |
| AccII | CGCG | 1 cut(s) | 41 |
| AciI | CCGC | 8 cut(s) | 39, 55, 105, 123, 126, 153, 863, 906 |
| AclWI | GGATC | 4 cut(s) | 472, 578, 749, 791 |
| AcsI | RAATTY | 1 cut(s) | 403 |
| AcuI | CTGAAG | 3 cut(s) | 456, 552, 573 |
| AdeI | CACNNNGTG | 1 cut(s) | 785 |
| AfaI | GTAC | 1 cut(s) | 218 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 244, 245, 623, 647, 653, 670, 671, 869, 872 |
| AgsI | TTSAA | 3 cut(s) | 400, 486, 669 |
| AjnI | CCWGG | 7 cut(s) | 640, 646, 739, 781, 811, 820, 888 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 333, 365 |
| AluBI | AGCT | 2 cut(s) | 205, 321 |
| AluI | AGCT | 2 cut(s) | 205, 321 |
| Alw21I | GWGCWC | 3 cut(s) | 207, 323, 790 |
| Alw26I | GTCTC | 1 cut(s) | 729 |
| AlwI | GGATC | 4 cut(s) | 472, 578, 749, 791 |
| AoxI | GGCC | 5 cut(s) | 44, 644, 764, 806, 860 |
| ApaI | GGGCCC | 1 cut(s) | 810 |
| ApeKI | GCWGC | 1 cut(s) | 378 |
| ApoI | RAATTY | 1 cut(s) | 403 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 31 |
| AspS9I | GGNCC | 7 cut(s) | 131, 542, 563, 644, 701, 806, 807 |
| AsuC2I | CCSGG | 1 cut(s) | 867 |
| AsuHPI | GGTGA | 5 cut(s) | 31, 112, 365, 430, 686 |
| AvaII | GGWCC | 4 cut(s) | 131, 542, 563, 701 |
| BaeGI | GKGCMC | 1 cut(s) | 810 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 423, 456 |
| BanII | GRGCYC | 4 cut(s) | 207, 251, 323, 810 |
| Bbv12I | GWGCWC | 3 cut(s) | 207, 323, 790 |
| BbvI | GCAGC | 1 cut(s) | 390 |
| BccI | CCATC | 5 cut(s) | 16, 308, 342, 365, 671 |
| BceAI | ACGGC | 3 cut(s) | 68, 226, 301 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 241, 275 |
| BciT130I | CCWGG | 7 cut(s) | 642, 648, 741, 783, 813, 822, 890 |
| BciVI | GTATCC | 2 cut(s) | 424, 612 |
| BcnI | CCSGG | 1 cut(s) | 867 |
| BcoDI | GTCTC | 1 cut(s) | 729 |
| BfaI | CTAG | 1 cut(s) | 762 |
| BfuAI | ACCTGC | 1 cut(s) | 761 |
| BfuI | GTATCC | 2 cut(s) | 424, 612 |
| BisI | GCNGC | 6 cut(s) | 39, 105, 126, 379, 863, 907 |
| BlsI | GCNGC | 6 cut(s) | 40, 106, 127, 380, 864, 908 |
| Bme1390I | CCNGG | 8 cut(s) | 642, 648, 741, 783, 813, 822, 867, 890 |
| Bme18I | GGWCC | 4 cut(s) | 131, 542, 563, 701 |
| BmgT120I | GGNCC | 7 cut(s) | 131, 542, 563, 644, 701, 806, 807 |
| BmiI | GGNNCC | 4 cut(s) | 133, 703, 808, 809 |
| BmrFI | CCNGG | 8 cut(s) | 642, 648, 741, 783, 813, 822, 867, 890 |
| BmsI | GCATC | 1 cut(s) | 292 |
| BpmI | CTGGAG | 2 cut(s) | 675, 911 |
| BpuMI | CCSGG | 1 cut(s) | 867 |
| Bsa29I | ATCGAT | 2 cut(s) | 345, 838 |
| BsaI | GGTCTC | 1 cut(s) | 729 |
| BsaJI | CCNNGG | 5 cut(s) | 641, 739, 740, 811, 854 |
| BsaWI | WCCGGW | 1 cut(s) | 476 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 244, 245, 623, 647, 653, 670, 671, 869, 872 |
| Bse118I | RCCGGY | 1 cut(s) | 128 |
| Bse1I | ACTGG | 2 cut(s) | 312, 565 |
| BseBI | CCWGG | 7 cut(s) | 642, 648, 741, 783, 813, 822, 890 |
| BseCI | ATCGAT | 2 cut(s) | 345, 838 |
| BseDI | CCNNGG | 5 cut(s) | 641, 739, 740, 811, 854 |
| BseGI | GGATG | 5 cut(s) | 181, 307, 376, 473, 880 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 244, 245, 623, 647, 653, 670, 671, 869, 872 |
| BseMII | CTCAG | 3 cut(s) | 338, 519, 924 |
| BseNI | ACTGG | 2 cut(s) | 312, 565 |
| BseRI | GAGGAG | 1 cut(s) | 151 |
| BseSI | GKGCMC | 1 cut(s) | 810 |
| BseXI | GCAGC | 1 cut(s) | 390 |
| Bsh1236I | CGCG | 1 cut(s) | 41 |
| BshFI | GGCC | 5 cut(s) | 46, 646, 766, 808, 862 |
| BshVI | ATCGAT | 2 cut(s) | 345, 838 |
| BsiHKAI | GWGCWC | 3 cut(s) | 207, 323, 790 |
| BsiSI | CCGG | 3 cut(s) | 129, 477, 866 |
| BslFI | GGGAC | 1 cut(s) | 117 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 244, 245, 623, 647, 653, 670, 671, 869, 872 |
| BsmAI | GTCTC | 1 cut(s) | 729 |
| BsmFI | GGGAC | 1 cut(s) | 117 |
| BsmI | GAATGC | 1 cut(s) | 221 |
| BsnI | GGCC | 5 cut(s) | 46, 646, 766, 808, 862 |
| Bso31I | GGTCTC | 1 cut(s) | 729 |
| Bsp120I | GGGCCC | 1 cut(s) | 806 |
| Bsp1286I | GDGCHC | 5 cut(s) | 207, 251, 323, 790, 810 |
| Bsp143I | GATC | 5 cut(s) | 464, 518, 583, 754, 796 |
| BspACI | CCGC | 8 cut(s) | 39, 55, 105, 123, 126, 153, 863, 906 |
| BspANI | GGCC | 5 cut(s) | 46, 646, 766, 808, 862 |
| BspCNI | CTCAG | 3 cut(s) | 337, 520, 923 |
| BspDI | ATCGAT | 2 cut(s) | 345, 838 |
| BspFNI | CGCG | 1 cut(s) | 41 |
| BspLI | GGNNCC | 4 cut(s) | 133, 703, 808, 809 |
| BspMI | ACCTGC | 1 cut(s) | 761 |
| BspPI | GGATC | 4 cut(s) | 472, 578, 749, 791 |
| BspTNI | GGTCTC | 1 cut(s) | 729 |
| BsrBI | CCGCTC | 2 cut(s) | 155, 906 |
| BsrFI | RCCGGY | 1 cut(s) | 128 |
| BsrI | ACTGG | 2 cut(s) | 312, 565 |
| BssAI | RCCGGY | 1 cut(s) | 128 |
| BssECI | CCNNGG | 5 cut(s) | 641, 739, 740, 811, 854 |
| BssMI | GATC | 5 cut(s) | 464, 518, 583, 754, 796 |
| Bst2UI | CCWGG | 7 cut(s) | 642, 648, 741, 783, 813, 822, 890 |
| Bst4CI | ACNGT | 1 cut(s) | 396 |
| BstC8I | GCNNGC | 3 cut(s) | 109, 692, 768 |
| BstDEI | CTNAG | 3 cut(s) | 324, 528, 910 |
| BstDSI | CCRYGG | 1 cut(s) | 854 |
| BstF5I | GGATG | 5 cut(s) | 181, 307, 376, 473, 880 |
| BstFNI | CGCG | 1 cut(s) | 41 |
| BstKTI | GATC | 5 cut(s) | 467, 521, 586, 757, 799 |
| BstMAI | GTCTC | 1 cut(s) | 729 |
| BstMBI | GATC | 5 cut(s) | 464, 518, 583, 754, 796 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 89 |
| BstNI | CCWGG | 7 cut(s) | 642, 648, 741, 783, 813, 822, 890 |
| BstNSI | RCATGY | 1 cut(s) | 694 |
| BstSCI | CCNGG | 8 cut(s) | 640, 646, 739, 781, 811, 820, 865, 888 |
| BstSLI | GKGCMC | 1 cut(s) | 810 |
| BstUI | CGCG | 1 cut(s) | 41 |
| BstV1I | GCAGC | 1 cut(s) | 390 |
| Bsu15I | ATCGAT | 2 cut(s) | 345, 838 |
| BsuI | GTATCC | 2 cut(s) | 424, 612 |
| BsuRI | GGCC | 5 cut(s) | 46, 646, 766, 808, 862 |
| BsuTUI | ATCGAT | 2 cut(s) | 345, 838 |
| BtgI | CCRYGG | 1 cut(s) | 854 |
| BtsCI | GGATG | 5 cut(s) | 181, 307, 376, 473, 880 |
| BtsI | GCAGTG | 1 cut(s) | 200 |
| BtsIMutI | CAGTG | 4 cut(s) | 200, 305, 558, 579 |
| BveI | ACCTGC | 1 cut(s) | 761 |
| Cac8I | GCNNGC | 3 cut(s) | 109, 692, 768 |
| Cfr10I | RCCGGY | 1 cut(s) | 128 |
| Cfr13I | GGNCC | 7 cut(s) | 131, 542, 563, 644, 701, 806, 807 |
| ClaI | ATCGAT | 2 cut(s) | 345, 838 |
| CsiI | ACCWGGT | 1 cut(s) | 781 |
| Csp6I | GTAC | 1 cut(s) | 217 |
| CviAII | CATG | 4 cut(s) | 187, 613, 691, 707 |
| CviQI | GTAC | 1 cut(s) | 217 |
| DdeI | CTNAG | 3 cut(s) | 324, 528, 910 |
| DpnI | GATC | 5 cut(s) | 466, 520, 585, 756, 798 |
| DpnII | GATC | 5 cut(s) | 464, 518, 583, 754, 796 |
| DraIII | CACNNNGTG | 1 cut(s) | 785 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 71 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 71 |
| Ecl136II | GAGCTC | 2 cut(s) | 205, 321 |
| Eco24I | GRGCYC | 4 cut(s) | 207, 251, 323, 810 |
| Eco31I | GGTCTC | 1 cut(s) | 729 |
| Eco47I | GGWCC | 4 cut(s) | 131, 542, 563, 701 |
| Eco53kI | GAGCTC | 2 cut(s) | 205, 321 |
| Eco57I | CTGAAG | 3 cut(s) | 456, 552, 573 |
| EcoICRI | GAGCTC | 2 cut(s) | 205, 321 |
| EcoO109I | RGGNCCY | 2 cut(s) | 701, 807 |
| EcoRII | CCWGG | 7 cut(s) | 640, 646, 739, 781, 811, 820, 888 |
| EcoT38I | GRGCYC | 4 cut(s) | 207, 251, 323, 810 |
| FaeI | CATG | 4 cut(s) | 190, 616, 694, 710 |
| FaqI | GGGAC | 1 cut(s) | 117 |
| FatI | CATG | 4 cut(s) | 186, 612, 690, 706 |
| FblI | GTMKAC | 1 cut(s) | 660 |
| Fnu4HI | GCNGC | 6 cut(s) | 39, 105, 126, 379, 863, 907 |
| FokI | GGATG | 5 cut(s) | 188, 314, 383, 460, 867 |
| FriOI | GRGCYC | 4 cut(s) | 207, 251, 323, 810 |
| Fsp4HI | GCNGC | 6 cut(s) | 39, 105, 126, 379, 863, 907 |
| FspBI | CTAG | 1 cut(s) | 762 |
| GluI | GCNGC | 6 cut(s) | 39, 105, 126, 379, 863, 907 |
| GsuI | CTGGAG | 2 cut(s) | 675, 911 |
| HaeIII | GGCC | 5 cut(s) | 46, 646, 766, 808, 862 |
| HapII | CCGG | 3 cut(s) | 129, 477, 866 |
| Hin1II | CATG | 4 cut(s) | 190, 616, 694, 710 |
| HinfI | GANTC | 5 cut(s) | 149, 412, 530, 657, 850 |
| HpaII | CCGG | 3 cut(s) | 129, 477, 866 |
| HphI | GGTGA | 5 cut(s) | 31, 112, 365, 430, 686 |
| Hpy166II | GTNNAC | 3 cut(s) | 88, 471, 661 |
| Hpy188I | TCNGA | 4 cut(s) | 35, 148, 505, 913 |
| Hpy188III | TCNNGA | 7 cut(s) | 338, 400, 462, 540, 591, 884, 901 |
| Hpy8I | GTNNAC | 3 cut(s) | 88, 471, 661 |
| Hpy99I | CGWCG | 2 cut(s) | 68, 212 |
| HpyAV | CCTTC | 7 cut(s) | 106, 151, 250, 555, 576, 597, 675 |
| HpyCH4III | ACNGT | 1 cut(s) | 396 |
| HpyCH4IV | ACGT | 1 cut(s) | 114 |
| HpyCH4V | TGCA | 2 cut(s) | 305, 845 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 89 |
| HpyF3I | CTNAG | 3 cut(s) | 324, 528, 910 |
| HpySE526I | ACGT | 1 cut(s) | 114 |
| Hsp92II | CATG | 4 cut(s) | 190, 616, 694, 710 |
| Kzo9I | GATC | 5 cut(s) | 464, 518, 583, 754, 796 |
| LmnI | GCTCC | 4 cut(s) | 190, 318, 892, 903 |
| Lsp1109I | GCAGC | 1 cut(s) | 390 |
| LweI | GCATC | 1 cut(s) | 292 |
| MabI | ACCWGGT | 1 cut(s) | 781 |
| MaeI | CTAG | 1 cut(s) | 762 |
| MaeII | ACGT | 1 cut(s) | 114 |
| MalI | GATC | 5 cut(s) | 466, 520, 585, 756, 798 |
| MbiI | CCGCTC | 2 cut(s) | 155, 906 |
| MboI | GATC | 5 cut(s) | 464, 518, 583, 754, 796 |
| MboII | GAAGA | 5 cut(s) | 159, 265, 433, 474, 629 |
| MhlI | GDGCHC | 5 cut(s) | 207, 251, 323, 790, 810 |
| MluCI | AATT | 6 cut(s) | 382, 403, 425, 449, 486, 594 |
| MlyI | GAGTC | 2 cut(s) | 539, 666 |
| MmeI | TCCRAC | 2 cut(s) | 343, 712 |
| MseI | TTAA | 2 cut(s) | 267, 489 |
| MspA1I | CMGCKG | 1 cut(s) | 107 |
| MspI | CCGG | 3 cut(s) | 129, 477, 866 |
| MspR9I | CCNGG | 8 cut(s) | 642, 648, 741, 783, 813, 822, 867, 890 |
| Mva1269I | GAATGC | 1 cut(s) | 221 |
| MvaI | CCWGG | 7 cut(s) | 642, 648, 741, 783, 813, 822, 890 |
| MvnI | CGCG | 1 cut(s) | 41 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 89 |
| NciI | CCSGG | 1 cut(s) | 867 |
| NdeII | GATC | 5 cut(s) | 464, 518, 583, 754, 796 |
| NlaIII | CATG | 4 cut(s) | 190, 616, 694, 710 |
| NlaIV | GGNNCC | 4 cut(s) | 133, 703, 808, 809 |
| NspI | RCATGY | 1 cut(s) | 694 |
| PaeI | GCATGC | 1 cut(s) | 694 |
| PaqCI | CACCTGC | 1 cut(s) | 761 |
| PasI | CCCWGGG | 1 cut(s) | 740 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 72, 81 |
| PctI | GAATGC | 1 cut(s) | 221 |
| PfeI | GAWTC | 3 cut(s) | 149, 412, 850 |
| PflFI | GACNNNGTC | 1 cut(s) | 71 |
| PkrI | GCNGC | 6 cut(s) | 40, 106, 127, 380, 864, 908 |
| PleI | GAGTC | 2 cut(s) | 538, 665 |
| PpsI | GAGTC | 2 cut(s) | 538, 665 |
| PpuMI | RGGWCCY | 1 cut(s) | 701 |
| Psp124BI | GAGCTC | 2 cut(s) | 207, 323 |
| Psp5II | RGGWCCY | 1 cut(s) | 701 |
| Psp6I | CCWGG | 7 cut(s) | 640, 646, 739, 781, 811, 820, 888 |
| PspGI | CCWGG | 7 cut(s) | 640, 646, 739, 781, 811, 820, 888 |
| PspN4I | GGNNCC | 4 cut(s) | 133, 703, 808, 809 |
| PspOMI | GGGCCC | 1 cut(s) | 806 |
| PspPI | GGNCC | 7 cut(s) | 131, 542, 563, 644, 701, 806, 807 |
| PspPPI | RGGWCCY | 1 cut(s) | 701 |
| PsyI | GACNNNGTC | 1 cut(s) | 71 |
| RsaI | GTAC | 1 cut(s) | 218 |
| RsaNI | GTAC | 1 cut(s) | 217 |
| SacI | GAGCTC | 2 cut(s) | 207, 323 |
| SaqAI | TTAA | 2 cut(s) | 267, 489 |
| SatI | GCNGC | 6 cut(s) | 39, 105, 126, 379, 863, 907 |
| Sau3AI | GATC | 5 cut(s) | 464, 518, 583, 754, 796 |
| Sau96I | GGNCC | 7 cut(s) | 131, 542, 563, 644, 701, 806, 807 |
| SchI | GAGTC | 2 cut(s) | 539, 666 |
| ScrFI | CCNGG | 8 cut(s) | 642, 648, 741, 783, 813, 822, 867, 890 |
| SduI | GDGCHC | 5 cut(s) | 207, 251, 323, 790, 810 |
| SexAI | ACCWGGT | 1 cut(s) | 781 |
| SfaNI | GCATC | 1 cut(s) | 292 |
| SinI | GGWCC | 4 cut(s) | 131, 542, 563, 701 |
| SphI | GCATGC | 1 cut(s) | 694 |
| Sse9I | AATT | 6 cut(s) | 382, 403, 425, 449, 486, 594 |
| SsiI | CCGC | 8 cut(s) | 39, 55, 105, 123, 126, 153, 863, 906 |
| SspMI | CTAG | 1 cut(s) | 762 |
| SstI | GAGCTC | 2 cut(s) | 207, 323 |
| StyD4I | CCNGG | 8 cut(s) | 640, 646, 739, 781, 811, 820, 865, 888 |
| TaaI | ACNGT | 1 cut(s) | 396 |
| TaiI | ACGT | 1 cut(s) | 117 |
| TaqI | TCGA | 5 cut(s) | 207, 251, 339, 345, 838 |
| TasI | AATT | 6 cut(s) | 382, 403, 425, 449, 486, 594 |
| TauI | GCSGC | 5 cut(s) | 41, 107, 128, 865, 909 |
| TfiI | GAWTC | 3 cut(s) | 149, 412, 850 |
| Tru1I | TTAA | 2 cut(s) | 267, 489 |
| Tru9I | TTAA | 2 cut(s) | 267, 489 |
| TscAI | CASTG | 4 cut(s) | 200, 312, 565, 586 |
| TseI | GCWGC | 1 cut(s) | 378 |
| TspDTI | ATGAA | 4 cut(s) | 192, 248, 296, 907 |
| TspGWI | ACGGA | 2 cut(s) | 188, 871 |
| TspRI | CASTG | 4 cut(s) | 200, 312, 565, 586 |
| Tth111I | GACNNNGTC | 1 cut(s) | 71 |
| VpaK11BI | GGWCC | 4 cut(s) | 131, 542, 563, 701 |
| XapI | RAATTY | 1 cut(s) | 403 |
| XceI | RCATGY | 1 cut(s) | 694 |
| XmiI | GTMKAC | 1 cut(s) | 660 |
| XspI | CTAG | 1 cut(s) | 762 |