MD04G1138800.v1.1

Proteasome

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
22709235 .. 22712573
3339 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1138800.v1.1.491

Sequence Viewer

Length: 924 bp
ATGGCGAACGACAAGTCGGTGATGGCAGTAATCAGAGCCGCGAGGCCGAACTTCCGCAACAACGACGACAAGGTCGTTTTCGCCGTTCACGCCTCCTTCCTCGCCGCTGGCTACGTCCTCACCGCCGCCGGTCCCCCTGCCTTCTCCGAATCCGCTCTCTCCTCATCTTCTACGGATGAAGTGGGCATGGAGCAGTGGAACGAGCTCGACGGCGAGTACGCATTCGTCTATATGAACCCAGAAAAGGGCTCGAAGAAGGTGCTGGTTAAGTGCCTTACGATGAACGGCAAGTTGCTTGTGGATGCACTGGCTGATGGGAGCTCTCAGCCCGTCCATCTCGAAATCGATGTTGGTGATTATGTTGGAGAGGATGGGGGCAGCAATTACTCCACACAGTTCAAGAATTTAGAGAATCTGGTGAAGAAATTGGATACTGAAGTTCTGTCAAAATTATATGGGTCTGGATCGTCCACATCCGGTTCTTCAATTAACCCTGTAAGTTCAGAAAAGAGTGAGAGATCAACAACTGAGTCTGTTTCTGGACCTTCACGCTTTCACACTGGACCTTCAGCCCCTTACACTGATCCTTCAGGAATTGCGTATCCTCCTGTCATGCCTTATGGTGGTAGTGATGTTCTTCCTGGGCCTGGTGCTGGAGTCTACCCTTCAAGGGGTGATGGTAGTGGAAGCATGCTTGTAGGACCCCATGACCCTCGTTGGTTTGGTGGCGTTGGAGACCCTGGGTTTAGTTTTGATCCCTCTAGGCCAGCAGGTGTTCCACCAGGTGCTCGTTTTGATCCCTATGGGCCCCCAGGTGTTCCAGGTTTTGAGCCTAATCGATTTGCAAGGAATCCACGGAGGCCGCCGGGAGGTGGCACTCATCCAGACCTGGAGCATTTCGGGAGCGGCTCAGATTTCATTTAG

Protein Analysis

308

Amino Acids

32.21

Weight (kDa)

5.07

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI31_Prot_N PF11566 15 - 153 8.9e-26 PI31 proteasome regulator N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 761
AasI GACNNNNNNGTC 1 cut(s) 71
Acc36I ACCTGC 1 cut(s) 761
AccBSI CCGCTC 2 cut(s) 155, 906
AccI GTMKAC 1 cut(s) 660
AccII CGCG 1 cut(s) 41
AciI CCGC 8 cut(s) 39, 55, 105, 123, 126, 153, 863, 906
AclWI GGATC 4 cut(s) 472, 578, 749, 791
AcsI RAATTY 1 cut(s) 403
AcuI CTGAAG 3 cut(s) 456, 552, 573
AdeI CACNNNGTG 1 cut(s) 785
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 9 cut(s) 244, 245, 623, 647, 653, 670, 671, 869, 872
AgsI TTSAA 3 cut(s) 400, 486, 669
AjnI CCWGG 7 cut(s) 640, 646, 739, 781, 811, 820, 888
AjuI GAANNNNNNNTTGG 2 cut(s) 333, 365
AluBI AGCT 2 cut(s) 205, 321
AluI AGCT 2 cut(s) 205, 321
Alw21I GWGCWC 3 cut(s) 207, 323, 790
Alw26I GTCTC 1 cut(s) 729
AlwI GGATC 4 cut(s) 472, 578, 749, 791
AoxI GGCC 5 cut(s) 44, 644, 764, 806, 860
ApaI GGGCCC 1 cut(s) 810
ApeKI GCWGC 1 cut(s) 378
ApoI RAATTY 1 cut(s) 403
ArsI GACNNNNNNTTYG 1 cut(s) 31
AspS9I GGNCC 7 cut(s) 131, 542, 563, 644, 701, 806, 807
AsuC2I CCSGG 1 cut(s) 867
AsuHPI GGTGA 5 cut(s) 31, 112, 365, 430, 686
AvaII GGWCC 4 cut(s) 131, 542, 563, 701
BaeGI GKGCMC 1 cut(s) 810
BaeI ACNNNNGTAYC 2 cut(s) 423, 456
BanII GRGCYC 4 cut(s) 207, 251, 323, 810
Bbv12I GWGCWC 3 cut(s) 207, 323, 790
BbvI GCAGC 1 cut(s) 390
BccI CCATC 5 cut(s) 16, 308, 342, 365, 671
BceAI ACGGC 3 cut(s) 68, 226, 301
BcgI CGANNNNNNTGC 2 cut(s) 241, 275
BciT130I CCWGG 7 cut(s) 642, 648, 741, 783, 813, 822, 890
BciVI GTATCC 2 cut(s) 424, 612
BcnI CCSGG 1 cut(s) 867
BcoDI GTCTC 1 cut(s) 729
BfaI CTAG 1 cut(s) 762
BfuAI ACCTGC 1 cut(s) 761
BfuI GTATCC 2 cut(s) 424, 612
BisI GCNGC 6 cut(s) 39, 105, 126, 379, 863, 907
BlsI GCNGC 6 cut(s) 40, 106, 127, 380, 864, 908
Bme1390I CCNGG 8 cut(s) 642, 648, 741, 783, 813, 822, 867, 890
Bme18I GGWCC 4 cut(s) 131, 542, 563, 701
BmgT120I GGNCC 7 cut(s) 131, 542, 563, 644, 701, 806, 807
BmiI GGNNCC 4 cut(s) 133, 703, 808, 809
BmrFI CCNGG 8 cut(s) 642, 648, 741, 783, 813, 822, 867, 890
BmsI GCATC 1 cut(s) 292
BpmI CTGGAG 2 cut(s) 675, 911
BpuMI CCSGG 1 cut(s) 867
Bsa29I ATCGAT 2 cut(s) 345, 838
BsaI GGTCTC 1 cut(s) 729
BsaJI CCNNGG 5 cut(s) 641, 739, 740, 811, 854
BsaWI WCCGGW 1 cut(s) 476
Bsc4I CCNNNNNNNGG 9 cut(s) 244, 245, 623, 647, 653, 670, 671, 869, 872
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 2 cut(s) 312, 565
BseBI CCWGG 7 cut(s) 642, 648, 741, 783, 813, 822, 890
BseCI ATCGAT 2 cut(s) 345, 838
BseDI CCNNGG 5 cut(s) 641, 739, 740, 811, 854
BseGI GGATG 5 cut(s) 181, 307, 376, 473, 880
BseLI CCNNNNNNNGG 9 cut(s) 244, 245, 623, 647, 653, 670, 671, 869, 872
BseMII CTCAG 3 cut(s) 338, 519, 924
BseNI ACTGG 2 cut(s) 312, 565
BseRI GAGGAG 1 cut(s) 151
BseSI GKGCMC 1 cut(s) 810
BseXI GCAGC 1 cut(s) 390
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 5 cut(s) 46, 646, 766, 808, 862
BshVI ATCGAT 2 cut(s) 345, 838
BsiHKAI GWGCWC 3 cut(s) 207, 323, 790
BsiSI CCGG 3 cut(s) 129, 477, 866
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 9 cut(s) 244, 245, 623, 647, 653, 670, 671, 869, 872
BsmAI GTCTC 1 cut(s) 729
BsmFI GGGAC 1 cut(s) 117
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 5 cut(s) 46, 646, 766, 808, 862
Bso31I GGTCTC 1 cut(s) 729
Bsp120I GGGCCC 1 cut(s) 806
Bsp1286I GDGCHC 5 cut(s) 207, 251, 323, 790, 810
Bsp143I GATC 5 cut(s) 464, 518, 583, 754, 796
BspACI CCGC 8 cut(s) 39, 55, 105, 123, 126, 153, 863, 906
BspANI GGCC 5 cut(s) 46, 646, 766, 808, 862
BspCNI CTCAG 3 cut(s) 337, 520, 923
BspDI ATCGAT 2 cut(s) 345, 838
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 4 cut(s) 133, 703, 808, 809
BspMI ACCTGC 1 cut(s) 761
BspPI GGATC 4 cut(s) 472, 578, 749, 791
BspTNI GGTCTC 1 cut(s) 729
BsrBI CCGCTC 2 cut(s) 155, 906
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 2 cut(s) 312, 565
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 5 cut(s) 641, 739, 740, 811, 854
BssMI GATC 5 cut(s) 464, 518, 583, 754, 796
Bst2UI CCWGG 7 cut(s) 642, 648, 741, 783, 813, 822, 890
Bst4CI ACNGT 1 cut(s) 396
BstC8I GCNNGC 3 cut(s) 109, 692, 768
BstDEI CTNAG 3 cut(s) 324, 528, 910
BstDSI CCRYGG 1 cut(s) 854
BstF5I GGATG 5 cut(s) 181, 307, 376, 473, 880
BstFNI CGCG 1 cut(s) 41
BstKTI GATC 5 cut(s) 467, 521, 586, 757, 799
BstMAI GTCTC 1 cut(s) 729
BstMBI GATC 5 cut(s) 464, 518, 583, 754, 796
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNI CCWGG 7 cut(s) 642, 648, 741, 783, 813, 822, 890
BstNSI RCATGY 1 cut(s) 694
BstSCI CCNGG 8 cut(s) 640, 646, 739, 781, 811, 820, 865, 888
BstSLI GKGCMC 1 cut(s) 810
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 390
Bsu15I ATCGAT 2 cut(s) 345, 838
BsuI GTATCC 2 cut(s) 424, 612
BsuRI GGCC 5 cut(s) 46, 646, 766, 808, 862
BsuTUI ATCGAT 2 cut(s) 345, 838
BtgI CCRYGG 1 cut(s) 854
BtsCI GGATG 5 cut(s) 181, 307, 376, 473, 880
BtsI GCAGTG 1 cut(s) 200
BtsIMutI CAGTG 4 cut(s) 200, 305, 558, 579
BveI ACCTGC 1 cut(s) 761
Cac8I GCNNGC 3 cut(s) 109, 692, 768
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 7 cut(s) 131, 542, 563, 644, 701, 806, 807
ClaI ATCGAT 2 cut(s) 345, 838
CsiI ACCWGGT 1 cut(s) 781
Csp6I GTAC 1 cut(s) 217
CviAII CATG 4 cut(s) 187, 613, 691, 707
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 3 cut(s) 324, 528, 910
DpnI GATC 5 cut(s) 466, 520, 585, 756, 798
DpnII GATC 5 cut(s) 464, 518, 583, 754, 796
DraIII CACNNNGTG 1 cut(s) 785
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
Ecl136II GAGCTC 2 cut(s) 205, 321
Eco24I GRGCYC 4 cut(s) 207, 251, 323, 810
Eco31I GGTCTC 1 cut(s) 729
Eco47I GGWCC 4 cut(s) 131, 542, 563, 701
Eco53kI GAGCTC 2 cut(s) 205, 321
Eco57I CTGAAG 3 cut(s) 456, 552, 573
EcoICRI GAGCTC 2 cut(s) 205, 321
EcoO109I RGGNCCY 2 cut(s) 701, 807
EcoRII CCWGG 7 cut(s) 640, 646, 739, 781, 811, 820, 888
EcoT38I GRGCYC 4 cut(s) 207, 251, 323, 810
FaeI CATG 4 cut(s) 190, 616, 694, 710
FaqI GGGAC 1 cut(s) 117
FatI CATG 4 cut(s) 186, 612, 690, 706
FblI GTMKAC 1 cut(s) 660
Fnu4HI GCNGC 6 cut(s) 39, 105, 126, 379, 863, 907
FokI GGATG 5 cut(s) 188, 314, 383, 460, 867
FriOI GRGCYC 4 cut(s) 207, 251, 323, 810
Fsp4HI GCNGC 6 cut(s) 39, 105, 126, 379, 863, 907
FspBI CTAG 1 cut(s) 762
GluI GCNGC 6 cut(s) 39, 105, 126, 379, 863, 907
GsuI CTGGAG 2 cut(s) 675, 911
HaeIII GGCC 5 cut(s) 46, 646, 766, 808, 862
HapII CCGG 3 cut(s) 129, 477, 866
Hin1II CATG 4 cut(s) 190, 616, 694, 710
HinfI GANTC 5 cut(s) 149, 412, 530, 657, 850
HpaII CCGG 3 cut(s) 129, 477, 866
HphI GGTGA 5 cut(s) 31, 112, 365, 430, 686
Hpy166II GTNNAC 3 cut(s) 88, 471, 661
Hpy188I TCNGA 4 cut(s) 35, 148, 505, 913
Hpy188III TCNNGA 7 cut(s) 338, 400, 462, 540, 591, 884, 901
Hpy8I GTNNAC 3 cut(s) 88, 471, 661
Hpy99I CGWCG 2 cut(s) 68, 212
HpyAV CCTTC 7 cut(s) 106, 151, 250, 555, 576, 597, 675
HpyCH4III ACNGT 1 cut(s) 396
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 2 cut(s) 305, 845
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 3 cut(s) 324, 528, 910
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 4 cut(s) 190, 616, 694, 710
Kzo9I GATC 5 cut(s) 464, 518, 583, 754, 796
LmnI GCTCC 4 cut(s) 190, 318, 892, 903
Lsp1109I GCAGC 1 cut(s) 390
LweI GCATC 1 cut(s) 292
MabI ACCWGGT 1 cut(s) 781
MaeI CTAG 1 cut(s) 762
MaeII ACGT 1 cut(s) 114
MalI GATC 5 cut(s) 466, 520, 585, 756, 798
MbiI CCGCTC 2 cut(s) 155, 906
MboI GATC 5 cut(s) 464, 518, 583, 754, 796
MboII GAAGA 5 cut(s) 159, 265, 433, 474, 629
MhlI GDGCHC 5 cut(s) 207, 251, 323, 790, 810
MluCI AATT 6 cut(s) 382, 403, 425, 449, 486, 594
MlyI GAGTC 2 cut(s) 539, 666
MmeI TCCRAC 2 cut(s) 343, 712
MseI TTAA 2 cut(s) 267, 489
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 3 cut(s) 129, 477, 866
MspR9I CCNGG 8 cut(s) 642, 648, 741, 783, 813, 822, 867, 890
Mva1269I GAATGC 1 cut(s) 221
MvaI CCWGG 7 cut(s) 642, 648, 741, 783, 813, 822, 890
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 89
NciI CCSGG 1 cut(s) 867
NdeII GATC 5 cut(s) 464, 518, 583, 754, 796
NlaIII CATG 4 cut(s) 190, 616, 694, 710
NlaIV GGNNCC 4 cut(s) 133, 703, 808, 809
NspI RCATGY 1 cut(s) 694
PaeI GCATGC 1 cut(s) 694
PaqCI CACCTGC 1 cut(s) 761
PasI CCCWGGG 1 cut(s) 740
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 81
PctI GAATGC 1 cut(s) 221
PfeI GAWTC 3 cut(s) 149, 412, 850
PflFI GACNNNGTC 1 cut(s) 71
PkrI GCNGC 6 cut(s) 40, 106, 127, 380, 864, 908
PleI GAGTC 2 cut(s) 538, 665
PpsI GAGTC 2 cut(s) 538, 665
PpuMI RGGWCCY 1 cut(s) 701
Psp124BI GAGCTC 2 cut(s) 207, 323
Psp5II RGGWCCY 1 cut(s) 701
Psp6I CCWGG 7 cut(s) 640, 646, 739, 781, 811, 820, 888
PspGI CCWGG 7 cut(s) 640, 646, 739, 781, 811, 820, 888
PspN4I GGNNCC 4 cut(s) 133, 703, 808, 809
PspOMI GGGCCC 1 cut(s) 806
PspPI GGNCC 7 cut(s) 131, 542, 563, 644, 701, 806, 807
PspPPI RGGWCCY 1 cut(s) 701
PsyI GACNNNGTC 1 cut(s) 71
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SacI GAGCTC 2 cut(s) 207, 323
SaqAI TTAA 2 cut(s) 267, 489
SatI GCNGC 6 cut(s) 39, 105, 126, 379, 863, 907
Sau3AI GATC 5 cut(s) 464, 518, 583, 754, 796
Sau96I GGNCC 7 cut(s) 131, 542, 563, 644, 701, 806, 807
SchI GAGTC 2 cut(s) 539, 666
ScrFI CCNGG 8 cut(s) 642, 648, 741, 783, 813, 822, 867, 890
SduI GDGCHC 5 cut(s) 207, 251, 323, 790, 810
SexAI ACCWGGT 1 cut(s) 781
SfaNI GCATC 1 cut(s) 292
SinI GGWCC 4 cut(s) 131, 542, 563, 701
SphI GCATGC 1 cut(s) 694
Sse9I AATT 6 cut(s) 382, 403, 425, 449, 486, 594
SsiI CCGC 8 cut(s) 39, 55, 105, 123, 126, 153, 863, 906
SspMI CTAG 1 cut(s) 762
SstI GAGCTC 2 cut(s) 207, 323
StyD4I CCNGG 8 cut(s) 640, 646, 739, 781, 811, 820, 865, 888
TaaI ACNGT 1 cut(s) 396
TaiI ACGT 1 cut(s) 117
TaqI TCGA 5 cut(s) 207, 251, 339, 345, 838
TasI AATT 6 cut(s) 382, 403, 425, 449, 486, 594
TauI GCSGC 5 cut(s) 41, 107, 128, 865, 909
TfiI GAWTC 3 cut(s) 149, 412, 850
Tru1I TTAA 2 cut(s) 267, 489
Tru9I TTAA 2 cut(s) 267, 489
TscAI CASTG 4 cut(s) 200, 312, 565, 586
TseI GCWGC 1 cut(s) 378
TspDTI ATGAA 4 cut(s) 192, 248, 296, 907
TspGWI ACGGA 2 cut(s) 188, 871
TspRI CASTG 4 cut(s) 200, 312, 565, 586
Tth111I GACNNNGTC 1 cut(s) 71
VpaK11BI GGWCC 4 cut(s) 131, 542, 563, 701
XapI RAATTY 1 cut(s) 403
XceI RCATGY 1 cut(s) 694
XmiI GTMKAC 1 cut(s) 660
XspI CTAG 1 cut(s) 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.