Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Forward (+)

4188926 .. 4195877

Gene Structure 6952 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G002620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAAAACATAATTTTTTTTTTATCAAGAAGAAATTTCATTAATAATGAACTGGATACAATGAGTTTTGCACTACTACAAAAACTTAGTCACATAACACTAATCACACAACGGAATAGAAATCATCTGTTGTGTGTGAAGTGTCTTGTGATTGATGGAACATTAAGTGTAGATGCTTTGGCTGATGGGGCTTCTCAGAACGTTCACTGTGAATTTAATGTTGGTGATTATGTGCAAGAAAATGAGGGCAGTAATTACTCATCACAGTTTAAGAACTTGGACACCCTAGTGAAGAATCTCAACGCTCAAGTTTTGTTGAAATTGGAGGAGTCTTCCACACCCAAGGCAACAAGAGTGAAATCTGAGAGAAGCAAAACGAAAAGCGAAATCAAAACCAGAGCAAGTTTTTACTTTGGTCCTTTTGAAGACGTAACTCAAAATAAAGTGGCATTGTGTCACCTTGATGACGATTTACTTCCTAGCTTTCTATACATAGGTGATATTCTGTTTCAGGTTGATACAATGGTTGTTCAGGCCATTGTGAAGTGTGTTACTTGTTTTCTTTTATATAATTCCTTAACAATTCTGCCTTGTCCCAAATACATTTTTAATAAATGTGTTAACTGCGTGGTTAACTATTGGTCTTTTCTGTTGCAAACCAGATCCAATCCGAACTACCCCGCACCGCCACAGATTCAAGGCCGCCAGTCAATCTCCGACATCGCGCCGATCCAACTCTGTCCAATCCACTCCGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

252

Amino Acids

28.51

Weight (kDa)

8.0

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI31_Prot_N	PF11566	43 - 111	9.3e-06	PI31 proteasome regulator N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	725
AciI	CCGC	4 cut(s)	681, 686, 703, 753
AclI	AACGTT	1 cut(s)	201
AclWI	GGATC	2 cut(s)	657, 724
AcsI	RAATTY	2 cut(s)	34, 212
AgsI	TTSAA	3 cut(s)	319, 425, 698
AjuI	GAANNNNNNNTTGG	2 cut(s)	204, 236
AleI	CACNNNNGTG	1 cut(s)	287
AluBI	AGCT	1 cut(s)	483
AluI	AGCT	1 cut(s)	483
AlwI	GGATC	2 cut(s)	657, 724
AoxI	GGCC	2 cut(s)	534, 700
ApoI	RAATTY	2 cut(s)	34, 212
ArsI	GACNNNNNNTTYG	2 cut(s)	73, 105
AseI	ATTAAT	1 cut(s)	42
AspLEI	GCGC	1 cut(s)	727
AspS9I	GGNCC	1 cut(s)	416
AsuHPI	GGTGA	3 cut(s)	236, 449, 509
AvaII	GGWCC	1 cut(s)	416
BaeI	ACNNNNGTAYC	2 cut(s)	510, 543
BbsI	GAAGAC	2 cut(s)	324, 432
BccI	CCATC	2 cut(s)	149, 179
BciVI	GTATCC	1 cut(s)	49
BfaI	CTAG	2 cut(s)	287, 480
BfuI	GTATCC	1 cut(s)	49
BisI	GCNGC	1 cut(s)	703
BlsI	GCNGC	1 cut(s)	704
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	416
BmsI	GCATC	1 cut(s)	163
BpiI	GAAGAC	2 cut(s)	324, 432
BpuEI	CTTGAG	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	342
Bse1I	ACTGG	2 cut(s)	57, 706
BseDI	CCNNGG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	209, 354
BseNI	ACTGG	2 cut(s)	57, 706
BseRI	GAGGAG	1 cut(s)	341
Bsh1236I	CGCG	1 cut(s)	725
BshFI	GGCC	2 cut(s)	536, 702
BslFI	GGGAC	1 cut(s)	579
BsmFI	GGGAC	1 cut(s)	579
BsnI	GGCC	2 cut(s)	536, 702
Bsp143I	GATC	2 cut(s)	662, 729
BspACI	CCGC	4 cut(s)	681, 686, 703, 753
BspANI	GGCC	2 cut(s)	536, 702
BspCNI	CTCAG	2 cut(s)	208, 355
BspFNI	CGCG	1 cut(s)	725
BspPI	GGATC	2 cut(s)	657, 724
BsrI	ACTGG	2 cut(s)	57, 706
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	2 cut(s)	662, 729
BssT1I	CCWWGG	1 cut(s)	342
Bst4CI	ACNGT	2 cut(s)	209, 267
BstDEI	CTNAG	3 cut(s)	86, 195, 363
BstFNI	CGCG	1 cut(s)	725
BstHHI	GCGC	1 cut(s)	727
BstKTI	GATC	2 cut(s)	665, 732
BstMBI	GATC	2 cut(s)	662, 729
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstUI	CGCG	1 cut(s)	725
BstV2I	GAAGAC	2 cut(s)	324, 432
BstX2I	RGATCY	1 cut(s)	662
BstYI	RGATCY	1 cut(s)	662
BsuI	GTATCC	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	536, 702
BtgZI	GCGATG	1 cut(s)	706
BtsIMutI	CAGTG	1 cut(s)	205
CfoI	GCGC	1 cut(s)	727
Cfr13I	GGNCC	1 cut(s)	416
CviJI	RGCY	5 cut(s)	182, 191, 483, 536, 702
CviKI_1	RGCY	5 cut(s)	182, 191, 483, 536, 702
DdeI	CTNAG	3 cut(s)	86, 195, 363
DpnI	GATC	2 cut(s)	664, 731
DpnII	GATC	2 cut(s)	662, 729
Eco130I	CCWWGG	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaiI	YATR	8 cut(s)	11, 95, 231, 490, 494, 568, 570, 757
FaqI	GGGAC	1 cut(s)	579
FauI	CCCGC	1 cut(s)	688
Fnu4HI	GCNGC	1 cut(s)	703
Fsp4HI	GCNGC	1 cut(s)	703
FspBI	CTAG	2 cut(s)	287, 480
GlaI	GCGC	1 cut(s)	726
GluI	GCNGC	1 cut(s)	703
HaeIII	GGCC	2 cut(s)	536, 702
HhaI	GCGC	1 cut(s)	727
Hin6I	GCGC	1 cut(s)	725
HinP1I	GCGC	1 cut(s)	725
HincII	GTYRAC	2 cut(s)	622, 634
HindII	GTYRAC	2 cut(s)	622, 634
HinfI	GANTC	3 cut(s)	295, 329, 694
HpaI	GTTAAC	2 cut(s)	622, 634
HphI	GGTGA	3 cut(s)	236, 449, 509
Hpy166II	GTNNAC	3 cut(s)	205, 622, 634
Hpy188I	TCNGA	4 cut(s)	198, 364, 672, 718
Hpy188III	TCNNGA	1 cut(s)	27
Hpy8I	GTNNAC	3 cut(s)	205, 622, 634
HpyCH4III	ACNGT	2 cut(s)	209, 267
HpyCH4IV	ACGT	2 cut(s)	201, 429
HpyCH4V	TGCA	3 cut(s)	71, 235, 655
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	3 cut(s)	86, 195, 363
HpySE526I	ACGT	2 cut(s)	201, 429
HspAI	GCGC	1 cut(s)	725
KspAI	GTTAAC	2 cut(s)	622, 634
Kzo9I	GATC	2 cut(s)	662, 729
LpnPI	CCDG	6 cut(s)	38, 409, 497, 518, 673, 719
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	2 cut(s)	287, 480
MaeII	ACGT	2 cut(s)	201, 429
MaeIII	GTNAC	4 cut(s)	89, 430, 455, 550
MalI	GATC	2 cut(s)	664, 731
MboI	GATC	2 cut(s)	662, 729
MboII	GAAGA	4 cut(s)	42, 304, 324, 437
MflI	RGATCY	1 cut(s)	662
MluCI	AATT	7 cut(s)	12, 34, 212, 253, 320, 571, 582
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	2 cut(s)	741, 757
MnlI	CCTC	2 cut(s)	238, 319
MseI	TTAA	8 cut(s)	42, 164, 216, 270, 578, 609, 621, 633
MslI	CAYNNNNRTG	2 cut(s)	287, 462
MvnI	CGCG	1 cut(s)	725
MwoI	GCNNNNNNNGC	1 cut(s)	188
NdeII	GATC	2 cut(s)	662, 729
NmuCI	GTSAC	2 cut(s)	89, 455
OliI	CACNNNNGTG	1 cut(s)	287
PfeI	GAWTC	2 cut(s)	295, 694
PkrI	GCNGC	1 cut(s)	704
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
PshBI	ATTAAT	1 cut(s)	42
Psp1406I	AACGTT	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	662
RseI	CAYNNNNRTG	2 cut(s)	287, 462
SaqAI	TTAA	8 cut(s)	42, 164, 216, 270, 578, 609, 621, 633
SatI	GCNGC	1 cut(s)	703
Sau3AI	GATC	2 cut(s)	662, 729
Sau96I	GGNCC	1 cut(s)	416
SchI	GAGTC	1 cut(s)	338
SetI	ASST	6 cut(s)	204, 432, 462, 485, 499, 516
SfaNI	GCATC	1 cut(s)	163
SinI	GGWCC	1 cut(s)	416
SmiMI	CAYNNNNRTG	2 cut(s)	287, 462
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
Sse9I	AATT	7 cut(s)	12, 34, 212, 253, 320, 571, 582
SsiI	CCGC	4 cut(s)	681, 686, 703, 753
SspMI	CTAG	2 cut(s)	287, 480
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	209, 267
TaiI	ACGT	2 cut(s)	204, 432
TasI	AATT	7 cut(s)	12, 34, 212, 253, 320, 571, 582
TauI	GCSGC	1 cut(s)	705
TfiI	GAWTC	2 cut(s)	295, 694
Tru1I	TTAA	8 cut(s)	42, 164, 216, 270, 578, 609, 621, 633
Tru9I	TTAA	8 cut(s)	42, 164, 216, 270, 578, 609, 621, 633
TscAI	CASTG	1 cut(s)	212
TseFI	GTSAC	2 cut(s)	89, 455
Tsp45I	GTSAC	2 cut(s)	89, 455
TspDTI	ATGAA	3 cut(s)	17, 28, 63
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	416
VspI	ATTAAT	1 cut(s)	42
XapI	RAATTY	2 cut(s)	34, 212
XspI	CTAG	2 cut(s)	287, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.