Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Forward (+)

63454226 .. 63457068

Gene Structure 2843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG456900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGATCTCTAAACTAGTAAGGTCACACTTTTCATTTTGGTCTTCAATTCAACAAAGCGGGCTGCAGCCTACAAGAGCTCATCCATTAAGATTGTACAAGGAAGTGGGTATTGAGAAATGGAACGAGTTCAAGAACGAGTACGCGTTCGTGTATTTGAACCCGGAAAAGGGTTCGAAGAAGGTTCTGGTGAAGTGTCTTATGATTGATGGAACATTGAGTGTAGATGCTTTGGCTGATGGGGCTTCTCAGAACGTTCACTGTGAATTTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

90

Amino Acids

10.29

Weight (kDa)

8.98

Isoelectric Point (pI)

30.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI31_Prot_N	PF11566	36 - 89	2.1e-08	PI31 proteasome regulator N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	143
AciI	CCGC	1 cut(s)	57
AclI	AACGTT	1 cut(s)	252
AcsI	RAATTY	1 cut(s)	263
AfaI	GTAC	2 cut(s)	95, 140
AfiI	CCNNNNNNNGG	2 cut(s)	166, 167
AflIII	ACRYGT	1 cut(s)	141
AgsI	TTSAA	4 cut(s)	45, 50, 130, 157
AhlI	ACTAGT	1 cut(s)	13
AluBI	AGCT	1 cut(s)	77
AluI	AGCT	1 cut(s)	77
Alw21I	GWGCWC	1 cut(s)	79
ApeKI	GCWGC	2 cut(s)	61, 64
ApoI	RAATTY	1 cut(s)	263
Asp700I	GAANNNNTTC	1 cut(s)	125
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	199
AsuII	TTCGAA	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	2 cut(s)	48, 76
BccI	CCATC	2 cut(s)	200, 230
BcnI	CCSGG	1 cut(s)	161
BcuI	ACTAGT	1 cut(s)	13
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	62
BisI	GCNGC	2 cut(s)	62, 65
BlsI	GCNGC	2 cut(s)	63, 66
Bme1390I	CCNGG	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	33
Bpu14I	TTCGAA	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 167
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	2 cut(s)	166, 167
BseMII	CTCAG	1 cut(s)	260
BseXI	GCAGC	2 cut(s)	48, 76
Bsh1236I	CGCG	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	161
BslI	CCNNNNNNNGG	2 cut(s)	166, 167
Bsp119I	TTCGAA	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	143
BspMAI	CTGCAG	1 cut(s)	66
BspT104I	TTCGAA	1 cut(s)	173
BsrGI	TGTACA	1 cut(s)	93
BssMI	GATC	1 cut(s)	3
Bst4CI	ACNGT	1 cut(s)	260
BstAUI	TGTACA	1 cut(s)	93
BstBI	TTCGAA	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	79
BstFNI	CGCG	1 cut(s)	143
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	159
BstSFI	CTRYAG	1 cut(s)	62
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	48, 76
BstV2I	GAAGAC	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	94, 139
CviJI	RGCY	5 cut(s)	61, 67, 77, 233, 242
CviKI_1	RGCY	5 cut(s)	61, 67, 77, 233, 242
CviQI	GTAC	2 cut(s)	94, 139
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	79
FaiI	YATR	1 cut(s)	200
FauI	CCCGC	1 cut(s)	50
Fnu4HI	GCNGC	2 cut(s)	62, 65
FokI	GGATG	1 cut(s)	66
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	2 cut(s)	62, 65
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	2 cut(s)	62, 65
HapII	CCGG	1 cut(s)	161
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	1 cut(s)	130
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	2 cut(s)	170, 174
Lsp1109I	GCAGC	2 cut(s)	48, 76
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	2 cut(s)	33, 187
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	2 cut(s)	45, 263
MluI	ACGCGT	1 cut(s)	141
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	2 cut(s)	86, 267
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	161
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	239
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	1 cut(s)	3
NmuCI	GTSAC	1 cut(s)	21
NspV	TTCGAA	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	63, 66
Psp124BI	GAGCTC	1 cut(s)	79
Psp1406I	AACGTT	1 cut(s)	252
PstI	CTGCAG	1 cut(s)	66
RsaI	GTAC	2 cut(s)	95, 140
RsaNI	GTAC	2 cut(s)	94, 139
SacI	GAGCTC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	86, 267
SatI	GCNGC	2 cut(s)	62, 65
Sau3AI	GATC	1 cut(s)	3
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	4 cut(s)	23, 79, 183, 255
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	62
SfuI	TTCGAA	1 cut(s)	173
SpeI	ACTAGT	1 cut(s)	13
Sse9I	AATT	2 cut(s)	45, 263
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	1 cut(s)	14
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	173
TasI	AATT	2 cut(s)	45, 263
TatI	WGTACW	1 cut(s)	93
Tru1I	TTAA	2 cut(s)	86, 267
Tru9I	TTAA	2 cut(s)	86, 267
TscAI	CASTG	1 cut(s)	263
TseFI	GTSAC	1 cut(s)	21
TseI	GCWGC	2 cut(s)	61, 64
Tsp45I	GTSAC	1 cut(s)	21
TspDTI	ATGAA	1 cut(s)	21
TspRI	CASTG	1 cut(s)	263
XapI	RAATTY	1 cut(s)	263
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.