Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Forward (+)

21557861 .. 21558508

Gene Structure 648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007821

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCGAACGAAAAGTCGGTGATGGCGGTGATCAGAGTGGCGAGGCCATCCTTCCGCAACAAAAACGACAAGGTAGCTTTTGCAGTTCACTCCTTCTTCCTTGCCTCTGGCTACGTGCTTATCGCTACCGGGCCTCCTGCTTTCTCCGACTCTGCCCTCTCGTCGTCGTTCTCCACTTGCGATGAAGAAGTAGGAACCGACCAATGGAACGAGCTGGACGAGGATAGTTTCGAAACGGTCCATCTCCAAATCAACGTTGATGACTATGTTGGAGAGAGTAATAATAATGGCAGCAGCAATTTAAAGAATTTGGAGACACTGGTGAGGAGCCTGGACACTCAGATTCTGTGTAAATTAGATGCTTGTTCCTCAAGTAATAGCAACAAGGCCTCAAGTTCAATAACAAGTACAACAACGGAGCCTGGTGGTACTGGAAGAATCTATCATTCTTGGCCGGGTGCTGGAATGTACACTGCTAGAGGCGATTATGGAGCACCACCCCCGGCTTCTGGTTTTTTTGCTTGGAATGGTTCAGCTTTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

182

Amino Acids

19.39

Weight (kDa)

4.72

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI31_Prot_N	PF11566	15 - 76	9.1e-06	PI31 proteasome regulator N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	26, 55
AclI	AACGTT	1 cut(s)	255
AcoI	YGGCCR	1 cut(s)	452
AcsI	RAATTY	1 cut(s)	307
AfaI	GTAC	3 cut(s)	409, 430, 470
AfiI	CCNNNNNNNGG	3 cut(s)	204, 461, 509
AgsI	TTSAA	1 cut(s)	399
AjnI	CCWGG	2 cut(s)	330, 421
AluBI	AGCT	3 cut(s)	77, 214, 536
AluI	AGCT	3 cut(s)	77, 214, 536
Alw21I	GWGCWC	1 cut(s)	496
Alw26I	GTCTC	1 cut(s)	308
AlwNI	CAGNNNCTG	1 cut(s)	346
AoxI	GGCC	4 cut(s)	44, 131, 387, 452
ApeKI	GCWGC	2 cut(s)	291, 294
ApoI	RAATTY	1 cut(s)	307
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AspS9I	GGNCC	2 cut(s)	131, 238
AsuC2I	CCSGG	3 cut(s)	130, 456, 503
AsuHPI	GGTGA	3 cut(s)	31, 40, 334
AsuII	TTCGAA	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	496
BbvI	GCAGC	2 cut(s)	303, 306
BccI	CCATC	3 cut(s)	16, 55, 249
BciT130I	CCWGG	2 cut(s)	332, 423
BclI	TGATCA	1 cut(s)	30
BcnI	CCSGG	3 cut(s)	130, 456, 503
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	477
BisI	GCNGC	2 cut(s)	292, 295
BlsI	GCNGC	2 cut(s)	293, 296
Bme1390I	CCNGG	5 cut(s)	130, 332, 423, 456, 503
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	131, 238
BmiI	GGNNCC	3 cut(s)	196, 329, 420
BmrFI	CCNGG	5 cut(s)	130, 332, 423, 456, 503
BmsI	GCATC	1 cut(s)	349
Bpu14I	TTCGAA	1 cut(s)	231
BpuEI	CTTGAG	2 cut(s)	355, 376
BpuMI	CCSGG	3 cut(s)	130, 456, 503
BsaAI	YACGTR	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	501
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 461, 509
Bse1I	ACTGG	2 cut(s)	324, 436
BseBI	CCWGG	2 cut(s)	332, 423
BseDI	CCNNGG	1 cut(s)	501
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	3 cut(s)	204, 461, 509
BseMII	CTCAG	1 cut(s)	353
BseNI	ACTGG	2 cut(s)	324, 436
BseRI	GAGGAG	1 cut(s)	340
BseXI	GCAGC	2 cut(s)	303, 306
BshFI	GGCC	4 cut(s)	46, 133, 389, 454
BsiHKAI	GWGCWC	1 cut(s)	496
BsiSI	CCGG	3 cut(s)	129, 455, 503
BslI	CCNNNNNNNGG	3 cut(s)	204, 461, 509
BsmAI	GTCTC	1 cut(s)	308
BsnI	GGCC	4 cut(s)	46, 133, 389, 454
Bsp119I	TTCGAA	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp1407I	TGTACA	1 cut(s)	468
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	2 cut(s)	26, 55
BspANI	GGCC	4 cut(s)	46, 133, 389, 454
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	3 cut(s)	196, 329, 420
BspT104I	TTCGAA	1 cut(s)	231
BsrGI	TGTACA	1 cut(s)	468
BsrI	ACTGG	2 cut(s)	324, 436
BssECI	CCNNGG	1 cut(s)	501
BssMI	GATC	1 cut(s)	30
Bst2UI	CCWGG	2 cut(s)	332, 423
Bst4CI	ACNGT	1 cut(s)	238
BstAUI	TGTACA	1 cut(s)	468
BstBAI	YACGTR	1 cut(s)	115
BstBI	TTCGAA	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	47
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	1 cut(s)	30
BstNI	CCWGG	2 cut(s)	332, 423
BstSCI	CCNGG	5 cut(s)	128, 330, 421, 454, 501
BstV1I	GCAGC	2 cut(s)	303, 306
BsuRI	GGCC	4 cut(s)	46, 133, 389, 454
BtgZI	GCGATG	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	317, 471
CaiI	CAGNNNCTG	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	131, 238
Csp6I	GTAC	3 cut(s)	408, 429, 469
CviAII	CATG	1 cut(s)	541
CviQI	GTAC	3 cut(s)	408, 429, 469
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
DraI	TTTAAA	1 cut(s)	303
EaeI	YGGCCR	1 cut(s)	452
Eco147I	AGGCCT	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	238
EcoRII	CCWGG	2 cut(s)	330, 421
FaeI	CATG	1 cut(s)	544
FaiI	YATR	3 cut(s)	267, 489, 542
FatI	CATG	1 cut(s)	540
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	292, 295
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	2 cut(s)	292, 295
FspBI	CTAG	1 cut(s)	477
GluI	GCNGC	2 cut(s)	292, 295
HaeIII	GGCC	4 cut(s)	46, 133, 389, 454
HapII	CCGG	3 cut(s)	129, 455, 503
Hin1II	CATG	1 cut(s)	544
HinfI	GANTC	3 cut(s)	149, 343, 438
HpaII	CCGG	3 cut(s)	129, 455, 503
HphI	GGTGA	3 cut(s)	31, 40, 334
Hpy166II	GTNNAC	2 cut(s)	88, 471
Hpy188I	TCNGA	3 cut(s)	35, 148, 342
Hpy8I	GTNNAC	2 cut(s)	88, 471
Hpy99I	CGWCG	2 cut(s)	166, 169
HpyAV	CCTTC	2 cut(s)	61, 103
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	2 cut(s)	114, 255
HpyCH4V	TGCA	1 cut(s)	83
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	2 cut(s)	114, 255
Hsp92II	CATG	1 cut(s)	544
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	3 cut(s)	327, 418, 491
Lsp1109I	GCAGC	2 cut(s)	303, 306
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	2 cut(s)	114, 255
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	3 cut(s)	88, 197, 447
MhlI	GDGCHC	1 cut(s)	496
MluCI	AATT	3 cut(s)	298, 307, 353
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	2 cut(s)	171, 250
MnlI	CCTC	9 cut(s)	36, 115, 144, 167, 214, 318, 379, 400, 473
MseI	TTAA	1 cut(s)	302
MspI	CCGG	3 cut(s)	129, 455, 503
MspR9I	CCNGG	5 cut(s)	130, 332, 423, 456, 503
MvaI	CCWGG	2 cut(s)	332, 423
NciI	CCSGG	3 cut(s)	130, 456, 503
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	544
NlaIV	GGNNCC	3 cut(s)	196, 329, 420
NspV	TTCGAA	1 cut(s)	231
PceI	AGGCCT	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	343, 438
PkrI	GCNGC	2 cut(s)	293, 296
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Ppu21I	YACGTR	1 cut(s)	115
Psp1406I	AACGTT	1 cut(s)	255
Psp6I	CCWGG	2 cut(s)	330, 421
PspGI	CCWGG	2 cut(s)	330, 421
PspN4I	GGNNCC	3 cut(s)	196, 329, 420
PspPI	GGNCC	2 cut(s)	131, 238
PstNI	CAGNNNCTG	1 cut(s)	346
RsaI	GTAC	3 cut(s)	409, 430, 470
RsaNI	GTAC	3 cut(s)	408, 429, 469
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	2 cut(s)	292, 295
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	2 cut(s)	131, 238
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	5 cut(s)	130, 332, 423, 456, 503
SduI	GDGCHC	1 cut(s)	496
SetI	ASST	6 cut(s)	75, 79, 117, 216, 258, 538
SfaNI	GCATC	1 cut(s)	349
SfuI	TTCGAA	1 cut(s)	231
SinI	GGWCC	1 cut(s)	238
SmlI	CTYRAG	2 cut(s)	370, 391
SmoI	CTYRAG	2 cut(s)	370, 391
Sse9I	AATT	3 cut(s)	298, 307, 353
SseBI	AGGCCT	1 cut(s)	389
SsiI	CCGC	2 cut(s)	26, 55
SspMI	CTAG	1 cut(s)	477
StuI	AGGCCT	1 cut(s)	389
StyD4I	CCNGG	5 cut(s)	128, 330, 421, 454, 501
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	2 cut(s)	117, 258
TaqI	TCGA	1 cut(s)	231
TasI	AATT	3 cut(s)	298, 307, 353
TatI	WGTACW	2 cut(s)	407, 468
TfiI	GAWTC	2 cut(s)	343, 438
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	2 cut(s)	324, 478
TseI	GCWGC	2 cut(s)	291, 294
TspDTI	ATGAA	2 cut(s)	198, 529
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	2 cut(s)	324, 478
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	1 cut(s)	307
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.