Rroxscaffold_6G00417790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001218
Physical Location & Seq
Reverse (-)
39409289 .. 39412469
3181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00417790.1

Sequence Viewer

Length: 456 bp
ATGTCACTCTTGGACCTGCTGTCCGTGATGGAGATTGGAGAGTATCATGGGGATGCCCTCTTCATAATGCTATTGTTTGGATGGCTGGTACAGCTCTATTTGCAGGGAACTAGGGATGTAATAGGTGAAGGGGAATCAAATGGAGGAAATTCTGATATTAAGAGCATGAGCTTGGCCAGTGGTGGAATCAGCCTTGAAAAGCATGGCATTTCATGCACTCTCAATCTGGATAAATACTCATGGGTTCTCCAAATAGATGAGTCCAATAACATTGCAATCATTTCAAAGTTCTGGATGCATTTGGTGAGACAATTCCTTGTGCCAGTTATGATTCATGGATGGTCTACCTACCTGGAGATTGCTAGAATTATATGGTACACTGGCCGTCTTCTCTTCAAAACTTTGATGCCTAATCTAGCTGTTATATCAGAACTGTTACATTATTGGCTAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.21

Weight (kDa)

5.65

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 24
AccI GTMKAC 1 cut(s) 344
AcoI YGGCCR 2 cut(s) 174, 382
AcsI RAATTY 1 cut(s) 148
AfaI GTAC 2 cut(s) 90, 377
AgsI TTSAA 3 cut(s) 197, 285, 397
AhdI GACNNNNNGTC 1 cut(s) 19
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 3 cut(s) 94, 171, 419
AluI AGCT 3 cut(s) 94, 171, 419
Alw26I GTCTC 1 cut(s) 301
AoxI GGCC 2 cut(s) 174, 382
ApoI RAATTY 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 2 cut(s) 137, 316
AvaII GGWCC 1 cut(s) 13
BalI TGGCCA 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 380
BccI CCATC 3 cut(s) 22, 75, 333
BceAI ACGGC 1 cut(s) 369
BciT130I CCWGG 1 cut(s) 353
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 3 cut(s) 111, 363, 416
BfuAI ACCTGC 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 353
Bme18I GGWCC 1 cut(s) 13
BmeRI GACNNNNNGTC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 13
BmrFI CCNGG 1 cut(s) 353
BmsI GCATC 3 cut(s) 43, 285, 396
BpiI GAAGAC 1 cut(s) 380
BpmI CTGGAG 1 cut(s) 374
Bse1I ACTGG 3 cut(s) 177, 323, 385
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 353
BseGI GGATG 5 cut(s) 58, 86, 121, 300, 344
BseMI GCAATG 1 cut(s) 270
BseNI ACTGG 3 cut(s) 177, 323, 385
BshFI GGCC 2 cut(s) 176, 384
BsmAI GTCTC 1 cut(s) 301
BsnI GGCC 2 cut(s) 176, 384
BspANI GGCC 2 cut(s) 176, 384
BspMI ACCTGC 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 270
BsrI ACTGG 3 cut(s) 177, 323, 385
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 1 cut(s) 435
Bst6I CTCTTC 2 cut(s) 65, 398
BstAPI GCANNNNNTGC 1 cut(s) 213
BstF5I GGATG 5 cut(s) 58, 86, 121, 300, 344
BstMAI GTCTC 1 cut(s) 301
BstMWI GCNNNNNNNGC 3 cut(s) 91, 100, 213
BstNI CCWGG 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 351
BstV2I GAAGAC 1 cut(s) 380
BsuRI GGCC 2 cut(s) 176, 384
BtsCI GGATG 5 cut(s) 58, 86, 121, 300, 344
BtsIMutI CAGTG 2 cut(s) 184, 378
BveI ACCTGC 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 13
Csp6I GTAC 2 cut(s) 89, 376
CviAII CATG 6 cut(s) 47, 166, 203, 213, 240, 335
CviJI RGCY 8 cut(s) 85, 94, 171, 176, 192, 384, 419, 448
CviKI_1 RGCY 8 cut(s) 85, 94, 171, 176, 192, 384, 419, 448
CviQI GTAC 2 cut(s) 89, 376
DriI GACNNNNNGTC 1 cut(s) 19
EaeI YGGCCR 2 cut(s) 174, 382
Eam1104I CTCTTC 2 cut(s) 65, 398
Eam1105I GACNNNNNGTC 1 cut(s) 19
EarI CTCTTC 2 cut(s) 65, 398
Eco47I GGWCC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 351
EcoT22I ATGCAT 1 cut(s) 300
FaeI CATG 6 cut(s) 50, 169, 206, 216, 243, 338
FatI CATG 6 cut(s) 46, 165, 202, 212, 239, 334
FblI GTMKAC 1 cut(s) 344
FokI GGATG 5 cut(s) 65, 93, 128, 307, 351
FspBI CTAG 3 cut(s) 111, 363, 416
GsuI CTGGAG 1 cut(s) 374
HaeIII GGCC 2 cut(s) 176, 384
Hin1II CATG 6 cut(s) 50, 169, 206, 216, 243, 338
HinfI GANTC 4 cut(s) 134, 186, 260, 331
HphI GGTGA 2 cut(s) 137, 316
Hpy166II GTNNAC 2 cut(s) 345, 378
Hpy188I TCNGA 2 cut(s) 154, 430
Hpy188III TCNNGA 2 cut(s) 227, 292
Hpy8I GTNNAC 2 cut(s) 345, 378
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 1 cut(s) 435
HpyCH4V TGCA 4 cut(s) 103, 216, 275, 298
HpyF10VI GCNNNNNNNGC 3 cut(s) 91, 100, 213
Hsp92II CATG 6 cut(s) 50, 169, 206, 216, 243, 338
LweI GCATC 3 cut(s) 43, 285, 396
MaeI CTAG 3 cut(s) 111, 363, 416
MaeIII GTNAC 2 cut(s) 3, 435
MboII GAAGA 3 cut(s) 52, 380, 385
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 3 cut(s) 148, 311, 366
MluNI TGGCCA 1 cut(s) 176
MlyI GAGTC 1 cut(s) 269
MnlI CCTC 2 cut(s) 68, 137
Mox20I TGGCCA 1 cut(s) 176
Mph1103I ATGCAT 1 cut(s) 300
MscI TGGCCA 1 cut(s) 176
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 51
Msp20I TGGCCA 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 353
MvaI CCWGG 1 cut(s) 353
MwoI GCNNNNNNNGC 3 cut(s) 91, 100, 213
NlaIII CATG 6 cut(s) 50, 169, 206, 216, 243, 338
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 300
PfeI GAWTC 3 cut(s) 134, 186, 331
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PspPI GGNCC 1 cut(s) 13
RsaI GTAC 2 cut(s) 90, 377
RsaNI GTAC 2 cut(s) 89, 376
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 1 cut(s) 159
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 353
SetI ASST 7 cut(s) 18, 96, 127, 173, 350, 354, 421
SfaNI GCATC 3 cut(s) 43, 285, 396
SinI GGWCC 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 51
Sse9I AATT 3 cut(s) 148, 311, 366
SspMI CTAG 3 cut(s) 111, 363, 416
StyD4I CCNGG 1 cut(s) 351
TaaI ACNGT 1 cut(s) 435
TasI AATT 3 cut(s) 148, 311, 366
TfiI GAWTC 3 cut(s) 134, 186, 331
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 2 cut(s) 184, 385
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 3 cut(s) 52, 201, 323
TspGWI ACGGA 1 cut(s) 13
TspRI CASTG 2 cut(s) 184, 385
VpaK11BI GGWCC 1 cut(s) 13
XapI RAATTY 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 344
XspI CTAG 3 cut(s) 111, 363, 416
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.