Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Forward (+)

23497780 .. 23501713

Gene Structure 3934 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1154600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCGAACGACAAGTCGGTGATGGCCGTGATCAGAGCCGCGAGGCCGACCTTCCGCAACAACGATGACAAGGTCGCCTTCGCCGTTCACGCCTCCTTCCTCGCCGCTGGCTACGTTCTCACCGCCGCTGGTCCCCCCGCCTTCTCCGATTCCGCTCTCTCCTCGCCTTCTACGGATGAAGTGGGCATGGAACAATGGAACGAGCTCGACGGCGAGTACGCATTTGTCTATATAAACCCAGAAAAGGGCTCGAAGAAGGTGCTTGTTAAATGCCTTGTAATGAACGACAAGTTACTTGTGGATGCTCTGGCTGATGGGAGTTCTCAGCCCGTCCATCTCGAAATCGACGTTGGTGAATATGTTGGAGAGGATGGGGGGAGCAATTACTCCACACAGTTCAAGAATTTGAAGAATTTGGTGAAGAATTTGGATACTGAAGTTCTGTCAAAATTATATGGGTCTGCATCTTCCACATCCGGTTCTTCAAGTAACCTTGAAAGTTCAGAAAGGAGTGAGAGATCAACAACTGAGCCTGTTTCTGGACCTTCAGGCTTTTACACTGGACCTCCAGACCCTTACACTGATCCTTCAGGAATTGTATATCCTCCTATCATGCCTTATGGTGGCAGTGATCTTTTGCCTGGGCCTGGTGCTGGAATCTACCCTTCAAGGGGTGGTGGCAGTGGAGGCATGCTTCTTGGACCCCGTGACCCTCGTTGGTTTGGTGGCGTTGGAGAACCTGGGTTTGGCTTTGATCCCTCTAGGCCAGAAGGTGTTCCACCAGGTGCCCGTTTTGATCCCTATGGGCCCCCAGGTGTTCCTGGTTTTGAGCGTAATCGATTTGCAAGGAATCCGCGGAGGCCGGGAGGTGGCACTCATCCAGATCTGGAGCATTTCGGGAGCGGCTCAGATTTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

307

Amino Acids

32.27

Weight (kDa)

4.87

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI31_Prot_N	PF11566	15 - 154	3.2e-24	PI31 proteasome regulator N-terminal
PI31_Prot_C	PF08577	207 - 270	1.7e-06	PI31 proteasome regulator

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	785
AccBSI	CCGCTC	2 cut(s)	155, 903
AccII	CGCG	2 cut(s)	41, 856
AclWI	GGATC	3 cut(s)	578, 749, 791
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	3 cut(s)	403, 412, 424
AcuI	CTGAAG	3 cut(s)	456, 531, 573
AdeI	CACNNNGTG	1 cut(s)	785
AfaI	GTAC	1 cut(s)	218
AgsI	TTSAA	5 cut(s)	400, 409, 486, 497, 669
AjnI	CCWGG	6 cut(s)	640, 646, 739, 781, 811, 820
AjuI	GAANNNNNNNTTGG	4 cut(s)	333, 365, 729, 761
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw21I	GWGCWC	1 cut(s)	207
AlwI	GGATC	3 cut(s)	578, 749, 791
AoxI	GGCC	6 cut(s)	24, 44, 644, 764, 806, 860
ApaI	GGGCCC	1 cut(s)	810
ApoI	RAATTY	3 cut(s)	403, 412, 424
ArsI	GACNNNNNNTTYG	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	774
AspS9I	GGNCC	7 cut(s)	131, 542, 563, 644, 701, 806, 807
AsuC2I	CCSGG	1 cut(s)	864
AsuHPI	GGTGA	4 cut(s)	31, 112, 365, 430
AvaII	GGWCC	4 cut(s)	131, 542, 563, 701
BaeGI	GKGCMC	2 cut(s)	790, 810
BaeI	ACNNNNGTAYC	2 cut(s)	423, 456
BanI	GGYRCC	1 cut(s)	785
BanII	GRGCYC	3 cut(s)	207, 251, 810
Bbv12I	GWGCWC	1 cut(s)	207
BccI	CCATC	4 cut(s)	16, 308, 342, 365
BceAI	ACGGC	3 cut(s)	11, 68, 226
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BciT130I	CCWGG	6 cut(s)	642, 648, 741, 783, 813, 822
BciVI	GTATCC	1 cut(s)	424
BclI	TGATCA	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	864
BfaI	CTAG	1 cut(s)	762
BfuI	GTATCC	1 cut(s)	424
BglII	AGATCT	1 cut(s)	883
BisI	GCNGC	4 cut(s)	39, 105, 126, 904
BlsI	GCNGC	4 cut(s)	40, 106, 127, 905
Bme1390I	CCNGG	7 cut(s)	642, 648, 741, 783, 813, 822, 864
Bme18I	GGWCC	4 cut(s)	131, 542, 563, 701
BmgT120I	GGNCC	7 cut(s)	131, 542, 563, 644, 701, 806, 807
BmiI	GGNNCC	5 cut(s)	133, 703, 787, 808, 809
BmrFI	CCNGG	7 cut(s)	642, 648, 741, 783, 813, 822, 864
BmsI	GCATC	2 cut(s)	292, 473
BpmI	CTGGAG	2 cut(s)	552, 908
BpuMI	CCSGG	1 cut(s)	864
Bsa29I	ATCGAT	1 cut(s)	838
BsaJI	CCNNGG	4 cut(s)	641, 740, 811, 854
BsaWI	WCCGGW	1 cut(s)	476
BsaXI	ACNNNNNCTCC	2 cut(s)	550, 580
Bse1I	ACTGG	1 cut(s)	565
BseBI	CCWGG	6 cut(s)	642, 648, 741, 783, 813, 822
BseCI	ATCGAT	1 cut(s)	838
BseDI	CCNNGG	4 cut(s)	641, 740, 811, 854
BseGI	GGATG	5 cut(s)	181, 307, 376, 473, 877
BseMII	CTCAG	3 cut(s)	338, 519, 921
BseNI	ACTGG	1 cut(s)	565
BseRI	GAGGAG	1 cut(s)	151
BseSI	GKGCMC	2 cut(s)	790, 810
Bsh1236I	CGCG	2 cut(s)	41, 856
BshFI	GGCC	6 cut(s)	26, 46, 646, 766, 808, 862
BshNI	GGYRCC	1 cut(s)	785
BshVI	ATCGAT	1 cut(s)	838
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	2 cut(s)	477, 863
BslFI	GGGAC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	117
BsnI	GGCC	6 cut(s)	26, 46, 646, 766, 808, 862
Bsp120I	GGGCCC	1 cut(s)	806
Bsp1286I	GDGCHC	4 cut(s)	207, 251, 790, 810
Bsp143I	GATC	7 cut(s)	30, 518, 583, 631, 754, 796, 883
BspANI	GGCC	6 cut(s)	26, 46, 646, 766, 808, 862
BspCNI	CTCAG	3 cut(s)	337, 520, 920
BspDI	ATCGAT	1 cut(s)	838
BspFNI	CGCG	2 cut(s)	41, 856
BspLI	GGNNCC	5 cut(s)	133, 703, 787, 808, 809
BspPI	GGATC	3 cut(s)	578, 749, 791
BspT107I	GGYRCC	1 cut(s)	785
BsrBI	CCGCTC	2 cut(s)	155, 903
BsrI	ACTGG	1 cut(s)	565
BssECI	CCNNGG	4 cut(s)	641, 740, 811, 854
BssMI	GATC	7 cut(s)	30, 518, 583, 631, 754, 796, 883
Bst2UI	CCWGG	6 cut(s)	642, 648, 741, 783, 813, 822
Bst4CI	ACNGT	1 cut(s)	396
BstC8I	GCNNGC	2 cut(s)	109, 692
BstDEI	CTNAG	3 cut(s)	324, 528, 907
BstDSI	CCRYGG	1 cut(s)	854
BstF5I	GGATG	5 cut(s)	181, 307, 376, 473, 877
BstFNI	CGCG	2 cut(s)	41, 856
BstKTI	GATC	7 cut(s)	33, 521, 586, 634, 757, 799, 886
BstMBI	GATC	7 cut(s)	30, 518, 583, 631, 754, 796, 883
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 687
BstNI	CCWGG	6 cut(s)	642, 648, 741, 783, 813, 822
BstNSI	RCATGY	1 cut(s)	694
BstSCI	CCNGG	7 cut(s)	640, 646, 739, 781, 811, 820, 862
BstSLI	GKGCMC	2 cut(s)	790, 810
BstUI	CGCG	2 cut(s)	41, 856
BstX2I	RGATCY	1 cut(s)	883
BstYI	RGATCY	1 cut(s)	883
Bsu15I	ATCGAT	1 cut(s)	838
BsuI	GTATCC	1 cut(s)	424
BsuRI	GGCC	6 cut(s)	26, 46, 646, 766, 808, 862
BsuTUI	ATCGAT	1 cut(s)	838
BtgI	CCRYGG	1 cut(s)	854
BtsCI	GGATG	5 cut(s)	181, 307, 376, 473, 877
BtsI	GCAGTG	2 cut(s)	634, 688
BtsIMutI	CAGTG	4 cut(s)	558, 579, 634, 688
Cac8I	GCNNGC	2 cut(s)	109, 692
Cfr13I	GGNCC	7 cut(s)	131, 542, 563, 644, 701, 806, 807
Cfr42I	CCGCGG	1 cut(s)	857
ClaI	ATCGAT	1 cut(s)	838
CsiI	ACCWGGT	1 cut(s)	781
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	3 cut(s)	187, 613, 691
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	3 cut(s)	324, 528, 907
DpnI	GATC	7 cut(s)	32, 520, 585, 633, 756, 798, 885
DpnII	GATC	7 cut(s)	30, 518, 583, 631, 754, 796, 883
DraIII	CACNNNGTG	1 cut(s)	785
EaeI	YGGCCR	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	205
Eco24I	GRGCYC	3 cut(s)	207, 251, 810
Eco47I	GGWCC	4 cut(s)	131, 542, 563, 701
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	3 cut(s)	456, 531, 573
EcoICRI	GAGCTC	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	807
EcoRII	CCWGG	6 cut(s)	640, 646, 739, 781, 811, 820
EcoT38I	GRGCYC	3 cut(s)	207, 251, 810
FaeI	CATG	3 cut(s)	190, 616, 694
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	3 cut(s)	186, 612, 690
FauI	CCCGC	1 cut(s)	145
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	4 cut(s)	39, 105, 126, 904
FokI	GGATG	5 cut(s)	188, 314, 383, 460, 864
FriOI	GRGCYC	3 cut(s)	207, 251, 810
Fsp4HI	GCNGC	4 cut(s)	39, 105, 126, 904
FspBI	CTAG	1 cut(s)	762
GluI	GCNGC	4 cut(s)	39, 105, 126, 904
GsuI	CTGGAG	2 cut(s)	552, 908
HaeIII	GGCC	6 cut(s)	26, 46, 646, 766, 808, 862
HapII	CCGG	2 cut(s)	477, 863
Hin1II	CATG	3 cut(s)	190, 616, 694
HinfI	GANTC	3 cut(s)	149, 657, 850
HpaII	CCGG	2 cut(s)	477, 863
HphI	GGTGA	4 cut(s)	31, 112, 365, 430
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	4 cut(s)	35, 148, 505, 910
Hpy188III	TCNNGA	8 cut(s)	338, 400, 540, 569, 591, 881, 887, 898
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	2 cut(s)	212, 350
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4IV	ACGT	2 cut(s)	114, 348
HpyCH4V	TGCA	2 cut(s)	464, 845
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 687
HpyF3I	CTNAG	3 cut(s)	324, 528, 907
HpySE526I	ACGT	2 cut(s)	114, 348
Hsp92II	CATG	3 cut(s)	190, 616, 694
Ksp22I	TGATCA	1 cut(s)	30
KspI	CCGCGG	1 cut(s)	857
Kzo9I	GATC	7 cut(s)	30, 518, 583, 631, 754, 796, 883
LmnI	GCTCC	3 cut(s)	378, 889, 900
LweI	GCATC	2 cut(s)	292, 473
MabI	ACCWGGT	1 cut(s)	781
MaeI	CTAG	1 cut(s)	762
MaeII	ACGT	2 cut(s)	114, 348
MaeIII	GTNAC	3 cut(s)	291, 488, 707
MalI	GATC	7 cut(s)	32, 520, 585, 633, 756, 798, 885
MbiI	CCGCTC	2 cut(s)	155, 903
MboI	GATC	7 cut(s)	30, 518, 583, 631, 754, 796, 883
MboII	GAAGA	5 cut(s)	265, 421, 433, 459, 474
MflI	RGATCY	1 cut(s)	883
MhlI	GDGCHC	4 cut(s)	207, 251, 790, 810
MluCI	AATT	6 cut(s)	382, 403, 412, 424, 449, 594
MmeI	TCCRAC	2 cut(s)	343, 712
MroXI	GAANNNNTTC	1 cut(s)	774
MseI	TTAA	1 cut(s)	267
MspA1I	CMGCKG	3 cut(s)	107, 128, 856
MspI	CCGG	2 cut(s)	477, 863
MspR9I	CCNGG	7 cut(s)	642, 648, 741, 783, 813, 822, 864
MvaI	CCWGG	6 cut(s)	642, 648, 741, 783, 813, 822
MvnI	CGCG	2 cut(s)	41, 856
MwoI	GCNNNNNNNGC	2 cut(s)	89, 687
NciI	CCSGG	1 cut(s)	864
NdeII	GATC	7 cut(s)	30, 518, 583, 631, 754, 796, 883
NlaIII	CATG	3 cut(s)	190, 616, 694
NlaIV	GGNNCC	5 cut(s)	133, 703, 787, 808, 809
NmuCI	GTSAC	1 cut(s)	707
NspI	RCATGY	1 cut(s)	694
PaeI	GCATGC	1 cut(s)	694
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 345
PdmI	GAANNNNTTC	1 cut(s)	774
PfeI	GAWTC	3 cut(s)	149, 657, 850
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	4 cut(s)	40, 106, 127, 905
Psp124BI	GAGCTC	1 cut(s)	207
Psp6I	CCWGG	6 cut(s)	640, 646, 739, 781, 811, 820
PspGI	CCWGG	6 cut(s)	640, 646, 739, 781, 811, 820
PspN4I	GGNNCC	5 cut(s)	133, 703, 787, 808, 809
PspOMI	GGGCCC	1 cut(s)	806
PspPI	GGNCC	7 cut(s)	131, 542, 563, 644, 701, 806, 807
PsuI	RGATCY	1 cut(s)	883
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SacI	GAGCTC	1 cut(s)	207
SacII	CCGCGG	1 cut(s)	857
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	4 cut(s)	39, 105, 126, 904
Sau3AI	GATC	7 cut(s)	30, 518, 583, 631, 754, 796, 883
Sau96I	GGNCC	7 cut(s)	131, 542, 563, 644, 701, 806, 807
ScrFI	CCNGG	7 cut(s)	642, 648, 741, 783, 813, 822, 864
SduI	GDGCHC	4 cut(s)	207, 251, 790, 810
SexAI	ACCWGGT	1 cut(s)	781
SfaNI	GCATC	2 cut(s)	292, 473
Sfr303I	CCGCGG	1 cut(s)	857
SgrBI	CCGCGG	1 cut(s)	857
SinI	GGWCC	4 cut(s)	131, 542, 563, 701
SphI	GCATGC	1 cut(s)	694
Sse9I	AATT	6 cut(s)	382, 403, 412, 424, 449, 594
SspMI	CTAG	1 cut(s)	762
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	7 cut(s)	640, 646, 739, 781, 811, 820, 862
TaaI	ACNGT	1 cut(s)	396
TaiI	ACGT	2 cut(s)	117, 351
TaqI	TCGA	5 cut(s)	207, 251, 339, 345, 838
TasI	AATT	6 cut(s)	382, 403, 412, 424, 449, 594
TauI	GCSGC	4 cut(s)	41, 107, 128, 906
TfiI	GAWTC	3 cut(s)	149, 657, 850
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	4 cut(s)	565, 586, 634, 688
TseFI	GTSAC	1 cut(s)	707
Tsp45I	GTSAC	1 cut(s)	707
TspDTI	ATGAA	3 cut(s)	192, 296, 904
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	4 cut(s)	565, 586, 634, 688
Tth111I	GACNNNGTC	1 cut(s)	71
VpaK11BI	GGWCC	4 cut(s)	131, 542, 563, 701
XapI	RAATTY	3 cut(s)	403, 412, 424
XceI	RCATGY	1 cut(s)	694
XmnI	GAANNNNTTC	1 cut(s)	774
XspI	CTAG	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.