Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Forward (+)

26906519 .. 26910006

Gene Structure 3488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG135100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCGAACGAAAAGTCGGTGATGGCGGTGATCAGAGCGGCGAGGCCAACCTTCCGCAACAACAACGACAAGGTTGCTTTTGCAGTTCACGCCTCTTTCGTAGCCTCCGGGTACGAGCTCATCGCCACCGGGCCTCCTGCTTTTTCCGATTCCGCCCTCCTCTCCTCCTCCCCAACCGATGAAGTAGGAATTGATGGATGGAACGAGCTTGACGAGGAGTACGCTTTCGTCTACGCCAACGCCGAAAACAAGAACAAGTTACTGGTCAAATGCCTTGTGATGAACGAGAAATTGTTCGTGGATGCTTTGGCTTCTCACTCGCTCCATCTCGAAATCAATGTGGGTGACTATGTTGGAGGAGAGAGTGGCAGCAATTACTCTTCACAGTTCAAAAATTTGGAGACACTGGTCAACACGCTGGACGCTCAACTTTTGTCTAAATTGGATTCCAGTTCCTCAACTAGTAACGTCGCCCCCGGAAGTTCAGAAACAAGTGAGAGATCAATTACTGAGCCTCCTACTCGACCTTCGGATCCTCCTCTTCCTTCCAGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAACATACGCGTCCAAATTTGTTATTGCAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

205

Amino Acids

22.05

Weight (kDa)

4.97

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI31_Prot_N	PF11566	15 - 152	2.2e-22	PI31 proteasome regulator N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	231
AccII	CGCG	1 cut(s)	592
AciI	CCGC	4 cut(s)	26, 38, 55, 153
AclWI	GGATC	2 cut(s)	527, 540
AcsI	RAATTY	2 cut(s)	394, 598
AfaI	GTAC	2 cut(s)	113, 221
AflIII	ACRYGT	1 cut(s)	590
AgsI	TTSAA	1 cut(s)	391
AhlI	ACTAGT	1 cut(s)	461
AjnI	CCWGG	1 cut(s)	548
AluBI	AGCT	2 cut(s)	118, 208
AluI	AGCT	2 cut(s)	118, 208
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	2 cut(s)	395, 558
AlwI	GGATC	2 cut(s)	527, 540
AoxI	GGCC	2 cut(s)	44, 131
ApeKI	GCWGC	1 cut(s)	369
ApoI	RAATTY	2 cut(s)	394, 598
ArsI	GACNNNNNNTTYG	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	131
AsuC2I	CCSGG	3 cut(s)	109, 130, 477
AsuHPI	GGTGA	3 cut(s)	31, 40, 356
BamHI	GGATCC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	381
BccI	CCATC	4 cut(s)	16, 188, 192, 333
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	1 cut(s)	550
BclI	TGATCA	1 cut(s)	30
BcnI	CCSGG	3 cut(s)	109, 130, 477
BcoDI	GTCTC	2 cut(s)	395, 558
BcuI	ACTAGT	1 cut(s)	461
BfaI	CTAG	1 cut(s)	462
BisI	GCNGC	2 cut(s)	39, 370
BlsI	GCNGC	2 cut(s)	40, 371
Bme1390I	CCNGG	4 cut(s)	109, 130, 477, 550
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	534
BmrFI	CCNGG	4 cut(s)	109, 130, 477, 550
BmsI	GCATC	1 cut(s)	292
BoxI	GACNNNNGTC	1 cut(s)	407
BpuMI	CCSGG	3 cut(s)	109, 130, 477
BsaI	GGTCTC	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	475
BsaXI	ACNNNNNCTCC	4 cut(s)	118, 148, 499, 529
Bse1I	ACTGG	3 cut(s)	267, 411, 450
BseBI	CCWGG	1 cut(s)	550
BseDI	CCNNGG	1 cut(s)	475
BseGI	GGATG	2 cut(s)	203, 307
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	3 cut(s)	267, 411, 450
BseRI	GAGGAG	6 cut(s)	149, 154, 157, 230, 372, 528
BseXI	GCAGC	1 cut(s)	381
Bsh1236I	CGCG	1 cut(s)	592
BshFI	GGCC	2 cut(s)	46, 133
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	3 cut(s)	108, 129, 477
BsmAI	GTCTC	2 cut(s)	395, 558
BsnI	GGCC	2 cut(s)	46, 133
Bso31I	GGTCTC	1 cut(s)	558
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	3 cut(s)	30, 500, 532
BspACI	CCGC	4 cut(s)	26, 38, 55, 153
BspANI	GGCC	2 cut(s)	46, 133
BspCNI	CTCAG	1 cut(s)	502
BspFNI	CGCG	1 cut(s)	592
BspLI	GGNNCC	1 cut(s)	534
BspPI	GGATC	2 cut(s)	527, 540
BspTNI	GGTCTC	1 cut(s)	558
BsrBI	CCGCTC	1 cut(s)	38
BsrI	ACTGG	3 cut(s)	267, 411, 450
BssECI	CCNNGG	1 cut(s)	475
BssMI	GATC	3 cut(s)	30, 500, 532
Bst2UI	CCWGG	1 cut(s)	550
Bst4CI	ACNGT	1 cut(s)	387
Bst6I	CTCTTC	2 cut(s)	385, 546
BstDEI	CTNAG	1 cut(s)	510
BstF5I	GGATG	2 cut(s)	203, 307
BstFNI	CGCG	1 cut(s)	592
BstKTI	GATC	3 cut(s)	33, 503, 535
BstMAI	GTCTC	2 cut(s)	395, 558
BstMBI	GATC	3 cut(s)	30, 500, 532
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	550
BstPAI	GACNNNNGTC	1 cut(s)	407
BstSCI	CCNGG	4 cut(s)	107, 128, 475, 548
BstUI	CGCG	1 cut(s)	592
BstV1I	GCAGC	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BsuRI	GGCC	2 cut(s)	46, 133
BtgZI	GCGATG	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	203, 307
BtsIMutI	CAGTG	1 cut(s)	404
Cfr13I	GGNCC	1 cut(s)	131
CseI	GACGC	2 cut(s)	431, 581
Csp6I	GTAC	2 cut(s)	112, 220
CviJI	RGCY	7 cut(s)	46, 104, 118, 133, 208, 311, 514
CviKI_1	RGCY	7 cut(s)	46, 104, 118, 133, 208, 311, 514
CviQI	GTAC	2 cut(s)	112, 220
DdeI	CTNAG	1 cut(s)	510
DpnI	GATC	3 cut(s)	32, 502, 534
DpnII	GATC	3 cut(s)	30, 500, 532
Eam1104I	CTCTTC	2 cut(s)	385, 546
EarI	CTCTTC	2 cut(s)	385, 546
EciI	GGCGGA	1 cut(s)	142
Ecl136II	GAGCTC	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	120
Eco31I	GGTCTC	1 cut(s)	558
Eco53kI	GAGCTC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	548
EcoT38I	GRGCYC	1 cut(s)	120
FaiI	YATR	2 cut(s)	351, 588
FbaI	TGATCA	1 cut(s)	30
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	2 cut(s)	39, 370
FokI	GGATG	2 cut(s)	210, 314
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	2 cut(s)	39, 370
FspBI	CTAG	1 cut(s)	462
GluI	GCNGC	2 cut(s)	39, 370
HaeIII	GGCC	2 cut(s)	46, 133
HapII	CCGG	3 cut(s)	108, 129, 477
HgaI	GACGC	2 cut(s)	431, 581
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	2 cut(s)	149, 446
HpaII	CCGG	3 cut(s)	108, 129, 477
HphI	GGTGA	3 cut(s)	31, 40, 356
Hpy166II	GTNNAC	3 cut(s)	88, 232, 412
Hpy188I	TCNGA	4 cut(s)	35, 148, 487, 532
Hpy188III	TCNNGA	2 cut(s)	329, 615
Hpy8I	GTNNAC	3 cut(s)	88, 232, 412
Hpy99I	CGWCG	1 cut(s)	473
HpyAV	CCTTC	3 cut(s)	61, 537, 555
HpyCH4III	ACNGT	1 cut(s)	387
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	2 cut(s)	83, 610
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	1 cut(s)	510
HpySE526I	ACGT	1 cut(s)	468
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	30, 500, 532
LmnI	GCTCC	1 cut(s)	327
Lsp1109I	GCAGC	1 cut(s)	381
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	3 cut(s)	258, 344, 464
MalI	GATC	3 cut(s)	32, 502, 534
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	3 cut(s)	30, 500, 532
MboII	GAAGA	2 cut(s)	372, 533
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	7 cut(s)	189, 290, 373, 394, 440, 504, 598
MluI	ACGCGT	1 cut(s)	590
MmeI	TCCRAC	1 cut(s)	334
MroXI	GAANNNNTTC	1 cut(s)	293
MspI	CCGG	3 cut(s)	108, 129, 477
MspR9I	CCNGG	4 cut(s)	109, 130, 477, 550
MvaI	CCWGG	1 cut(s)	550
MvnI	CGCG	1 cut(s)	592
MwoI	GCNNNNNNNGC	1 cut(s)	89
NciI	CCSGG	3 cut(s)	109, 130, 477
NdeII	GATC	3 cut(s)	30, 500, 532
NlaIV	GGNNCC	1 cut(s)	534
NmuCI	GTSAC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	3 cut(s)	96, 210, 240
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	149, 446
PkrI	GCNGC	2 cut(s)	40, 371
PshAI	GACNNNNGTC	1 cut(s)	407
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	548
PspN4I	GGNNCC	1 cut(s)	534
PspPI	GGNCC	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	532
RsaI	GTAC	2 cut(s)	113, 221
RsaNI	GTAC	2 cut(s)	112, 220
SacI	GAGCTC	1 cut(s)	120
SatI	GCNGC	2 cut(s)	39, 370
Sau3AI	GATC	3 cut(s)	30, 500, 532
Sau96I	GGNCC	1 cut(s)	131
ScrFI	CCNGG	4 cut(s)	109, 130, 477, 550
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	7 cut(s)	53, 75, 120, 210, 471, 529, 554
SfaNI	GCATC	1 cut(s)	292
SpeI	ACTAGT	1 cut(s)	461
Sse9I	AATT	7 cut(s)	189, 290, 373, 394, 440, 504, 598
SsiI	CCGC	4 cut(s)	26, 38, 55, 153
SspMI	CTAG	1 cut(s)	462
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	4 cut(s)	107, 128, 475, 548
TaaI	ACNGT	1 cut(s)	387
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	2 cut(s)	330, 523
TasI	AATT	7 cut(s)	189, 290, 373, 394, 440, 504, 598
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	2 cut(s)	149, 446
TscAI	CASTG	1 cut(s)	411
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	1 cut(s)	369
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	2 cut(s)	195, 296
TspRI	CASTG	1 cut(s)	411
XapI	RAATTY	2 cut(s)	394, 598
XmiI	GTMKAC	1 cut(s)	231
XmnI	GAANNNNTTC	1 cut(s)	293
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.