Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Reverse (-)

41605693 .. 41606577

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G018780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCGAACGAAAAGTCGGTGATGGCGGTTATCAGAGTGGCGAGGCCATCCTTCCGCAACAAAAACGACAAGGTAGCTTTTGCCGTTCACGCCTTCTTCCTTGCCTCTGGCTACCTGGAAGAGGAGCACGCGTTCCTTTACGCCAACCCAGAAAACAAGAAGTTGGTGCTGGTCAAGTGCCTTGTAATAAACCATAAACTGTTTTTTTTTTTATTTGTCAATCACACGAATAATAATAATGGCAGCAGCAATTTAAAGAATTTGGAGACATTGGTGAAGAGCCTGGACACTCAGGTTCTGTGTAAATTAGATACTTGTTCCTCAAGTAATAGCCACAAGGCCTCAAGTTCAATAACAAGTACAACAACGGAGCCTGGTGGTACTGGAAGAATCTATCTTTCTTGGCCGGGTGCTGGAATGTACACTGCTAGAGGCGATTATGGAGCACCACCCCCGGCTCCTGGTTTTTTTGCCGACCGGTTCGCGTGGAATGGTTCAGCTTTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

169

Amino Acids

18.56

Weight (kDa)

9.2

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	131, 485
AciI	CCGC	2 cut(s)	26, 55
AcoI	YGGCCR	1 cut(s)	404
AcsI	RAATTY	1 cut(s)	259
AfaI	GTAC	3 cut(s)	361, 382, 422
AfiI	CCNNNNNNNGG	3 cut(s)	121, 413, 461
AflIII	ACRYGT	1 cut(s)	129
AgeI	ACCGGT	1 cut(s)	477
AgsI	TTSAA	1 cut(s)	351
AjnI	CCWGG	4 cut(s)	114, 282, 373, 460
AloI	GAACNNNNNNTCC	2 cut(s)	116, 148
AluBI	AGCT	2 cut(s)	77, 500
AluI	AGCT	2 cut(s)	77, 500
Alw21I	GWGCWC	2 cut(s)	129, 448
Alw26I	GTCTC	1 cut(s)	260
AlwNI	CAGNNNCTG	1 cut(s)	298
AoxI	GGCC	3 cut(s)	44, 339, 404
ApeKI	GCWGC	2 cut(s)	243, 246
ApoI	RAATTY	1 cut(s)	259
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AsiGI	ACCGGT	1 cut(s)	477
AsuC2I	CCSGG	2 cut(s)	408, 455
AsuHPI	GGTGA	2 cut(s)	31, 286
Bbv12I	GWGCWC	2 cut(s)	129, 448
BbvI	GCAGC	2 cut(s)	255, 258
BccI	CCATC	2 cut(s)	16, 55
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	4 cut(s)	116, 284, 375, 462
BcnI	CCSGG	2 cut(s)	408, 455
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	1 cut(s)	429
BisI	GCNGC	2 cut(s)	244, 247
BlsI	GCNGC	2 cut(s)	245, 248
Bme1390I	CCNGG	6 cut(s)	116, 284, 375, 408, 455, 462
BmiI	GGNNCC	2 cut(s)	372, 459
BmrFI	CCNGG	6 cut(s)	116, 284, 375, 408, 455, 462
BpuEI	CTTGAG	2 cut(s)	307, 328
BpuMI	CCSGG	2 cut(s)	408, 455
BsaJI	CCNNGG	1 cut(s)	453
BsaWI	WCCGGW	1 cut(s)	477
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 413, 461
Bse118I	RCCGGY	1 cut(s)	477
Bse1I	ACTGG	1 cut(s)	388
BseBI	CCWGG	4 cut(s)	116, 284, 375, 462
BseDI	CCNNGG	1 cut(s)	453
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	3 cut(s)	121, 413, 461
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	2 cut(s)	255, 258
Bsh1236I	CGCG	2 cut(s)	131, 485
Bsh1285I	CGRYCG	1 cut(s)	478
BshFI	GGCC	3 cut(s)	46, 341, 406
BshTI	ACCGGT	1 cut(s)	477
BsiEI	CGRYCG	1 cut(s)	478
BsiHKAI	GWGCWC	2 cut(s)	129, 448
BsiSI	CCGG	3 cut(s)	407, 455, 478
BslI	CCNNNNNNNGG	3 cut(s)	121, 413, 461
BsmAI	GTCTC	1 cut(s)	260
BsnI	GGCC	3 cut(s)	46, 341, 406
Bsp1286I	GDGCHC	2 cut(s)	129, 448
Bsp1407I	TGTACA	1 cut(s)	420
BspACI	CCGC	2 cut(s)	26, 55
BspANI	GGCC	3 cut(s)	46, 341, 406
BspCNI	CTCAG	1 cut(s)	304
BspFNI	CGCG	2 cut(s)	131, 485
BspLI	GGNNCC	2 cut(s)	372, 459
BspQI	GCTCTTC	1 cut(s)	272
BsrFI	RCCGGY	1 cut(s)	477
BsrGI	TGTACA	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	388
BssAI	RCCGGY	1 cut(s)	477
BssECI	CCNNGG	1 cut(s)	453
Bst2UI	CCWGG	4 cut(s)	116, 284, 375, 462
Bst4CI	ACNGT	1 cut(s)	201
Bst6I	CTCTTC	2 cut(s)	114, 272
BstAUI	TGTACA	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	291
BstENI	CCTNNNNNAGG	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	47
BstFNI	CGCG	2 cut(s)	131, 485
BstMAI	GTCTC	1 cut(s)	260
BstMCI	CGRYCG	1 cut(s)	478
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	4 cut(s)	116, 284, 375, 462
BstSCI	CCNGG	6 cut(s)	114, 282, 373, 406, 453, 460
BstUI	CGCG	2 cut(s)	131, 485
BstV1I	GCAGC	2 cut(s)	255, 258
BsuRI	GGCC	3 cut(s)	46, 341, 406
BtsCI	GGATG	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	423
Cac8I	GCNNGC	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	477
Csp6I	GTAC	3 cut(s)	360, 381, 421
CspAI	ACCGGT	1 cut(s)	477
CviAII	CATG	1 cut(s)	505
CviQI	GTAC	3 cut(s)	360, 381, 421
DdeI	CTNAG	1 cut(s)	291
DraI	TTTAAA	1 cut(s)	255
EaeI	YGGCCR	1 cut(s)	404
Eam1104I	CTCTTC	2 cut(s)	114, 272
EarI	CTCTTC	2 cut(s)	114, 272
Eco147I	AGGCCT	1 cut(s)	341
EcoNI	CCTNNNNNAGG	1 cut(s)	119
EcoRII	CCWGG	4 cut(s)	114, 282, 373, 460
FaeI	CATG	1 cut(s)	508
FaiI	YATR	3 cut(s)	195, 441, 506
FatI	CATG	1 cut(s)	504
Fnu4HI	GCNGC	2 cut(s)	244, 247
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	2 cut(s)	244, 247
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	2 cut(s)	244, 247
HaeIII	GGCC	3 cut(s)	46, 341, 406
HapII	CCGG	3 cut(s)	407, 455, 478
Hin1II	CATG	1 cut(s)	508
HinfI	GANTC	1 cut(s)	390
HpaII	CCGG	3 cut(s)	407, 455, 478
HphI	GGTGA	2 cut(s)	31, 286
Hpy166II	GTNNAC	2 cut(s)	88, 423
Hpy188I	TCNGA	1 cut(s)	35
Hpy8I	GTNNAC	2 cut(s)	88, 423
HpyAV	CCTTC	2 cut(s)	61, 103
HpyCH4III	ACNGT	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	508
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	4 cut(s)	124, 370, 443, 463
Lsp1109I	GCAGC	2 cut(s)	255, 258
MaeI	CTAG	1 cut(s)	429
MboII	GAAGA	4 cut(s)	88, 131, 289, 399
MhlI	GDGCHC	2 cut(s)	129, 448
MluCI	AATT	3 cut(s)	250, 259, 305
MluI	ACGCGT	1 cut(s)	129
MnlI	CCTC	6 cut(s)	36, 115, 115, 331, 352, 425
MseI	TTAA	1 cut(s)	254
MspI	CCGG	3 cut(s)	407, 455, 478
MspR9I	CCNGG	6 cut(s)	116, 284, 375, 408, 455, 462
MvaI	CCWGG	4 cut(s)	116, 284, 375, 462
MvnI	CGCG	2 cut(s)	131, 485
MwoI	GCNNNNNNNGC	1 cut(s)	89
NciI	CCSGG	2 cut(s)	408, 455
NlaIII	CATG	1 cut(s)	508
NlaIV	GGNNCC	2 cut(s)	372, 459
PceI	AGGCCT	1 cut(s)	341
PciSI	GCTCTTC	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	390
PinAI	ACCGGT	1 cut(s)	477
PkrI	GCNGC	2 cut(s)	245, 248
Psp6I	CCWGG	4 cut(s)	114, 282, 373, 460
PspGI	CCWGG	4 cut(s)	114, 282, 373, 460
PspN4I	GGNNCC	2 cut(s)	372, 459
PstNI	CAGNNNCTG	1 cut(s)	298
RsaI	GTAC	3 cut(s)	361, 382, 422
RsaNI	GTAC	3 cut(s)	360, 381, 421
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	2 cut(s)	244, 247
ScrFI	CCNGG	6 cut(s)	116, 284, 375, 408, 455, 462
SduI	GDGCHC	2 cut(s)	129, 448
SetI	ASST	5 cut(s)	75, 79, 117, 297, 502
SmlI	CTYRAG	2 cut(s)	322, 343
SmoI	CTYRAG	2 cut(s)	322, 343
Sse9I	AATT	3 cut(s)	250, 259, 305
SseBI	AGGCCT	1 cut(s)	341
SsiI	CCGC	2 cut(s)	26, 55
SspMI	CTAG	1 cut(s)	429
StuI	AGGCCT	1 cut(s)	341
StyD4I	CCNGG	6 cut(s)	114, 282, 373, 406, 453, 460
TaaI	ACNGT	1 cut(s)	201
TasI	AATT	3 cut(s)	250, 259, 305
TatI	WGTACW	2 cut(s)	359, 420
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	1 cut(s)	430
TseI	GCWGC	2 cut(s)	243, 246
TspDTI	ATGAA	1 cut(s)	493
TspGWI	ACGGA	1 cut(s)	383
TspRI	CASTG	1 cut(s)	430
XagI	CCTNNNNNAGG	1 cut(s)	119
XapI	RAATTY	1 cut(s)	259
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.