Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Forward (+)

55558547 .. 55568135

Gene Structure 9589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG409000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGCATGTTTCTGGGCGCCCGATCACAAGCCCCCGACGACGTTGACCATTGAGTTTGATTGGAAGACCGGTTTAGTAGGCATGGATCTGTATGGTCCTTCTTTACTCATCAAGTGGGGAACTAGGGATGTAATAGGTGAAGGGGAATCAAATGGAGGAAATCCTGATATTAAGAGCATGTTGTTTTGGTGTAGATCTGGGGAAGATTCTGACCTCATACTTGTGGCATTGGAGCTTCAGCAAGGTTGCACAGGTAACCATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

88

Amino Acids

9.64

Weight (kDa)

4.54

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	16
AclWI	GGATC	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	221
AcyI	GRCGYC	1 cut(s)	17
AgeI	ACCGGT	1 cut(s)	68
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
AlwI	GGATC	1 cut(s)	93
AsiGI	ACCGGT	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	123
BfoI	RGCGCY	1 cut(s)	20
BglII	AGATCT	1 cut(s)	194
Bme18I	GGWCC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	259
BsaWI	WCCGGW	1 cut(s)	68
Bse118I	RCCGGY	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	1 cut(s)	133
BshNI	GGYRCC	1 cut(s)	16
BshTI	ACCGGT	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	69
Bsp143I	GATC	3 cut(s)	22, 85, 194
Bsp19I	CCATGG	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	16
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	3 cut(s)	22, 85, 194
BssNI	GRCGYC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	259
BstACI	GRCGYC	1 cut(s)	17
BstDSI	CCRYGG	1 cut(s)	259
BstEII	GGTNACC	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	133
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	3 cut(s)	25, 88, 197
BstMBI	GATC	3 cut(s)	22, 85, 194
BstNSI	RCATGY	2 cut(s)	9, 181
BstPI	GGTNACC	1 cut(s)	254
BstV2I	GAAGAC	1 cut(s)	71
BstX2I	RGATCY	2 cut(s)	85, 194
BstYI	RGATCY	2 cut(s)	85, 194
BtgI	CCRYGG	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	133
CfoI	GCGC	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	95
CspAI	ACCGGT	1 cut(s)	68
CviAII	CATG	4 cut(s)	6, 82, 178, 260
CviJI	RGCY	2 cut(s)	31, 235
CviKI_1	RGCY	2 cut(s)	31, 235
DinI	GGCGCC	1 cut(s)	18
DpnI	GATC	3 cut(s)	24, 87, 196
DpnII	GATC	3 cut(s)	22, 85, 194
Eco130I	CCWWGG	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	221
Eco91I	GGTNACC	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	259
EgeI	GGCGCC	1 cut(s)	18
EheI	GGCGCC	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	4 cut(s)	9, 85, 181, 263
FaiI	YATR	6 cut(s)	7, 83, 93, 179, 218, 261
FatI	CATG	4 cut(s)	5, 81, 177, 259
FokI	GGATG	1 cut(s)	140
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	1 cut(s)	18
HaeII	RGCGCY	1 cut(s)	20
HapII	CCGG	1 cut(s)	69
HhaI	GCGC	1 cut(s)	19
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	4 cut(s)	9, 85, 181, 263
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	2 cut(s)	146, 206
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	1 cut(s)	45
Hpy99I	CGWCG	2 cut(s)	40, 43
HpyAV	CCTTC	2 cut(s)	108, 134
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	4 cut(s)	9, 85, 181, 263
HspAI	GCGC	1 cut(s)	17
KasI	GGCGCC	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	22, 85, 194
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	4 cut(s)	82, 177, 183, 237
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	3 cut(s)	24, 87, 196
MboI	GATC	3 cut(s)	22, 85, 194
MboII	GAAGA	2 cut(s)	76, 215
MflI	RGATCY	2 cut(s)	85, 194
Mly113I	GGCGCC	1 cut(s)	17
MnlI	CCTC	2 cut(s)	149, 224
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	221
MspI	CCGG	1 cut(s)	69
NarI	GGCGCC	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	259
NdeII	GATC	3 cut(s)	22, 85, 194
NlaIII	CATG	4 cut(s)	9, 85, 181, 263
NlaIV	GGNNCC	1 cut(s)	18
NspI	RCATGY	2 cut(s)	9, 181
PfeI	GAWTC	2 cut(s)	146, 206
PinAI	ACCGGT	1 cut(s)	68
PluTI	GGCGCC	1 cut(s)	20
PspEI	GGTNACC	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	95
PsuI	RGATCY	2 cut(s)	85, 194
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	171
Sau3AI	GATC	3 cut(s)	22, 85, 194
Sau96I	GGNCC	1 cut(s)	95
SetI	ASST	6 cut(s)	44, 139, 216, 237, 247, 256
SfoI	GGCGCC	1 cut(s)	18
SinI	GGWCC	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	221
SspDI	GGCGCC	1 cut(s)	16
SspMI	CTAG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	259
TaiI	ACGT	1 cut(s)	44
TfiI	GAWTC	2 cut(s)	146, 206
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	95
XceI	RCATGY	2 cut(s)	9, 181
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.