Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Forward (+)

27188806 .. 27191906

Gene Structure 3101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G011500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCGAACGAAAAGTCGGTGATGGCGGTGATCAGAGCGGCGAGGCCAACCTTCCGCAACAACAACGACAAGGTTGCTTTTGCAGTTCACGCCTCTTTCGTAGCCTCCGGGTACGAGCTCATCGCCACCGGGCCTCCTGCTTTTTCCGATTCCGCCCTCCTCTCCTCCTCCCCAACCGATGGAGAGTACGCTTTCGTCTACGCCAACGACGAAAACAAGAACAAGTTACTGGTCAAATGCCTTGTGATGAATGAGAAATTGTTCGTGGATGCTTTGGCTTCTCACTCGCTCCATCTCGAAATCAATGTGGGTGACTATGTTGGAGGAGAGAGTGGCAGCAATTACTCTTCACAGTTCAAAAATTTGGAGACACTGGTCAACACGCTGGACGCTCAACTTTTGTCTAAATTGGATTCCAGTTCCTCAACTAGTAACGTCGCCCCCGGAAGTTCAGAAACAAGTGAGAGATCAATTACTGAGCCTCCTACTCGACCTTCGGATCCTCCTCTTCCTTCCAGAATTGTCTATCCTTCTGTTAATCCTATAGGTGATAGTGATCGTTTCCCTGGGCCTGGTGCTGGAATGTATCCTGCTAGAGGTGATTTTGGTGGTGGAGGCATGCTTCTAGGACCAAATGATCCTCGGTGGTTTGGCGGCATTAGAGAGCCTGGGTTTCCTGGAGGACAACCGGGTGTTCCTCCTGGTGCTCGTTTTGACCCCTATGGGCCACCTGGTGTTCCTGGTTTTGAGCCCAATAGGTTTGCAAGGAATCCACGGAGACCCGGGGGTGGCACTCATCCAGACTTGGAACATTTTGGGAGTGGTTCTGATTTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

279

Amino Acids

29.51

Weight (kDa)

5.26

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI31_Prot_N	PF11566	15 - 141	7.2e-17	PI31 proteasome regulator N-terminal
PI31_Prot_C	PF08577	182 - 243	7.2e-06	PI31 proteasome regulator

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	179
AccBSI	CCGCTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	198
AciI	CCGC	5 cut(s)	26, 38, 55, 153, 654
AclWI	GGATC	3 cut(s)	494, 507, 632
AcsI	RAATTY	1 cut(s)	361
AdeI	CACNNNGTG	1 cut(s)	734
AfaI	GTAC	2 cut(s)	113, 188
AfiI	CCNNNNNNNGG	5 cut(s)	179, 572, 578, 596, 788
AgsI	TTSAA	1 cut(s)	358
AhlI	ACTAGT	1 cut(s)	428
AjnI	CCWGG	7 cut(s)	565, 571, 667, 676, 700, 730, 739
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
Alw21I	GWGCWC	2 cut(s)	120, 709
Alw26I	GTCTC	2 cut(s)	362, 772
AlwI	GGATC	3 cut(s)	494, 507, 632
Ama87I	CYCGRG	1 cut(s)	782
AoxI	GGCC	4 cut(s)	44, 131, 569, 725
ApeKI	GCWGC	1 cut(s)	336
ApoI	RAATTY	1 cut(s)	361
ArsI	GACNNNNNNTTYG	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	260
AspS9I	GGNCC	4 cut(s)	131, 569, 629, 725
AsuC2I	CCSGG	6 cut(s)	109, 130, 444, 690, 783, 784
AsuHPI	GGTGA	5 cut(s)	31, 40, 323, 560, 611
AvaI	CYCGRG	1 cut(s)	782
AvaII	GGWCC	1 cut(s)	629
BamHI	GGATCC	1 cut(s)	499
BanII	GRGCYC	2 cut(s)	120, 753
Bbv12I	GWGCWC	2 cut(s)	120, 709
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	3 cut(s)	16, 173, 300
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	7 cut(s)	567, 573, 669, 678, 702, 732, 741
BciVI	GTATCC	1 cut(s)	597
BclI	TGATCA	1 cut(s)	30
BcnI	CCSGG	6 cut(s)	109, 130, 444, 690, 783, 784
BcoDI	GTCTC	2 cut(s)	362, 772
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	3 cut(s)	429, 594, 626
BfmI	CTRYAG	1 cut(s)	543
BfuI	GTATCC	1 cut(s)	597
BisI	GCNGC	3 cut(s)	39, 337, 655
BlsI	GCNGC	3 cut(s)	40, 338, 656
Bme18I	GGWCC	1 cut(s)	629
BmeT110I	CYCGRG	1 cut(s)	782
BmgT120I	GGNCC	4 cut(s)	131, 569, 629, 725
BmiI	GGNNCC	1 cut(s)	501
BmsI	GCATC	1 cut(s)	259
BoxI	GACNNNNGTC	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	699
BpuMI	CCSGG	6 cut(s)	109, 130, 444, 690, 783, 784
BsaBI	GATNNNNATC	1 cut(s)	555
BsaI	GGTCTC	1 cut(s)	772
BsaJI	CCNNGG	8 cut(s)	442, 565, 566, 641, 668, 773, 782, 783
BsaXI	ACNNNNNCTCC	4 cut(s)	118, 148, 466, 496
Bsc4I	CCNNNNNNNGG	5 cut(s)	179, 572, 578, 596, 788
Bse1I	ACTGG	3 cut(s)	234, 378, 417
Bse8I	GATNNNNATC	1 cut(s)	555
BseBI	CCWGG	7 cut(s)	567, 573, 669, 678, 702, 732, 741
BseDI	CCNNGG	8 cut(s)	442, 565, 566, 641, 668, 773, 782, 783
BseGI	GGATG	2 cut(s)	274, 796
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	5 cut(s)	179, 572, 578, 596, 788
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	3 cut(s)	234, 378, 417
BseRI	GAGGAG	5 cut(s)	149, 154, 157, 339, 495
BseXI	GCAGC	1 cut(s)	348
BshFI	GGCC	4 cut(s)	46, 133, 571, 727
BsiHKAI	GWGCWC	2 cut(s)	120, 709
BsiHKCI	CYCGRG	1 cut(s)	782
BsiSI	CCGG	5 cut(s)	108, 129, 444, 689, 783
BslI	CCNNNNNNNGG	5 cut(s)	179, 572, 578, 596, 788
BsmAI	GTCTC	2 cut(s)	362, 772
BsnI	GGCC	4 cut(s)	46, 133, 571, 727
Bso31I	GGTCTC	1 cut(s)	772
BsoBI	CYCGRG	1 cut(s)	782
Bsp1286I	GDGCHC	3 cut(s)	120, 709, 753
Bsp143I	GATC	5 cut(s)	30, 467, 499, 556, 637
BspACI	CCGC	5 cut(s)	26, 38, 55, 153, 654
BspANI	GGCC	4 cut(s)	46, 133, 571, 727
BspCNI	CTCAG	1 cut(s)	469
BspLI	GGNNCC	1 cut(s)	501
BspPI	GGATC	3 cut(s)	494, 507, 632
BspTNI	GGTCTC	1 cut(s)	772
BsrBI	CCGCTC	1 cut(s)	38
BsrI	ACTGG	3 cut(s)	234, 378, 417
BssECI	CCNNGG	8 cut(s)	442, 565, 566, 641, 668, 773, 782, 783
BssMI	GATC	5 cut(s)	30, 467, 499, 556, 637
Bst2UI	CCWGG	7 cut(s)	567, 573, 669, 678, 702, 732, 741
Bst4CI	ACNGT	1 cut(s)	354
Bst6I	CTCTTC	2 cut(s)	352, 513
BstC8I	GCNNGC	1 cut(s)	620
BstDEI	CTNAG	1 cut(s)	477
BstDSI	CCRYGG	1 cut(s)	773
BstENI	CCTNNNNNAGG	1 cut(s)	594
BstF5I	GGATG	2 cut(s)	274, 796
BstKTI	GATC	5 cut(s)	33, 470, 502, 559, 640
BstMAI	GTCTC	2 cut(s)	362, 772
BstMBI	GATC	5 cut(s)	30, 467, 499, 556, 637
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	7 cut(s)	567, 573, 669, 678, 702, 732, 741
BstNSI	RCATGY	1 cut(s)	622
BstPAI	GACNNNNGTC	1 cut(s)	374
BstSFI	CTRYAG	1 cut(s)	543
BstV1I	GCAGC	1 cut(s)	348
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
BsuI	GTATCC	1 cut(s)	597
BsuRI	GGCC	4 cut(s)	46, 133, 571, 727
BtgI	CCRYGG	1 cut(s)	773
BtgZI	GCGATG	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	274, 796
BtsIMutI	CAGTG	1 cut(s)	371
Cac8I	GCNNGC	1 cut(s)	620
Cfr13I	GGNCC	4 cut(s)	131, 569, 629, 725
Cfr9I	CCCGGG	1 cut(s)	782
CseI	GACGC	1 cut(s)	398
CsiI	ACCWGGT	1 cut(s)	730
Csp6I	GTAC	2 cut(s)	112, 187
CviAII	CATG	1 cut(s)	619
CviQI	GTAC	2 cut(s)	112, 187
DdeI	CTNAG	1 cut(s)	477
DpnI	GATC	5 cut(s)	32, 469, 501, 558, 639
DpnII	GATC	5 cut(s)	30, 467, 499, 556, 637
DraIII	CACNNNGTG	1 cut(s)	734
Eam1104I	CTCTTC	2 cut(s)	352, 513
EarI	CTCTTC	2 cut(s)	352, 513
EciI	GGCGGA	1 cut(s)	142
Ecl136II	GAGCTC	1 cut(s)	118
Eco24I	GRGCYC	2 cut(s)	120, 753
Eco31I	GGTCTC	1 cut(s)	772
Eco47I	GGWCC	1 cut(s)	629
Eco53kI	GAGCTC	1 cut(s)	118
Eco88I	CYCGRG	1 cut(s)	782
EcoICRI	GAGCTC	1 cut(s)	118
EcoNI	CCTNNNNNAGG	1 cut(s)	594
EcoRII	CCWGG	7 cut(s)	565, 571, 667, 676, 700, 730, 739
EcoT38I	GRGCYC	2 cut(s)	120, 753
FaeI	CATG	1 cut(s)	622
FaiI	YATR	4 cut(s)	318, 545, 620, 723
FatI	CATG	1 cut(s)	618
FbaI	TGATCA	1 cut(s)	30
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	3 cut(s)	39, 337, 655
FokI	GGATG	2 cut(s)	281, 783
FriOI	GRGCYC	2 cut(s)	120, 753
Fsp4HI	GCNGC	3 cut(s)	39, 337, 655
FspBI	CTAG	3 cut(s)	429, 594, 626
GluI	GCNGC	3 cut(s)	39, 337, 655
GsuI	CTGGAG	1 cut(s)	699
HaeIII	GGCC	4 cut(s)	46, 133, 571, 727
HapII	CCGG	5 cut(s)	108, 129, 444, 689, 783
HgaI	GACGC	1 cut(s)	398
Hin1II	CATG	1 cut(s)	622
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	3 cut(s)	149, 413, 769
HpaII	CCGG	5 cut(s)	108, 129, 444, 689, 783
HphI	GGTGA	5 cut(s)	31, 40, 323, 560, 611
Hpy166II	GTNNAC	3 cut(s)	88, 199, 379
Hpy188I	TCNGA	5 cut(s)	35, 148, 454, 499, 829
Hpy188III	TCNNGA	3 cut(s)	296, 516, 800
Hpy8I	GTNNAC	3 cut(s)	88, 199, 379
Hpy99I	CGWCG	2 cut(s)	212, 440
HpyAV	CCTTC	4 cut(s)	61, 504, 522, 540
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	2 cut(s)	83, 764
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	1 cut(s)	477
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	1 cut(s)	622
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	5 cut(s)	30, 467, 499, 556, 637
LmnI	GCTCC	1 cut(s)	294
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	1 cut(s)	259
MabI	ACCWGGT	1 cut(s)	730
MaeI	CTAG	3 cut(s)	429, 594, 626
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	3 cut(s)	225, 311, 431
MalI	GATC	5 cut(s)	32, 469, 501, 558, 639
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	5 cut(s)	30, 467, 499, 556, 637
MboII	GAAGA	2 cut(s)	339, 500
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	3 cut(s)	120, 709, 753
MluCI	AATT	6 cut(s)	257, 340, 361, 407, 471, 519
MmeI	TCCRAC	1 cut(s)	301
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	1 cut(s)	537
MspI	CCGG	5 cut(s)	108, 129, 444, 689, 783
MvaI	CCWGG	7 cut(s)	567, 573, 669, 678, 702, 732, 741
MwoI	GCNNNNNNNGC	1 cut(s)	89
NciI	CCSGG	6 cut(s)	109, 130, 444, 690, 783, 784
NdeII	GATC	5 cut(s)	30, 467, 499, 556, 637
NlaIII	CATG	1 cut(s)	622
NlaIV	GGNNCC	1 cut(s)	501
NmuCI	GTSAC	1 cut(s)	311
NspI	RCATGY	1 cut(s)	622
PaeI	GCATGC	1 cut(s)	622
PasI	CCCWGGG	1 cut(s)	566
PcsI	WCGNNNNNNNCGW	2 cut(s)	96, 207
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	3 cut(s)	149, 413, 769
PflMI	CCANNNNNTGG	1 cut(s)	179
PfoI	TCCNGGA	1 cut(s)	676
PkrI	GCNGC	3 cut(s)	40, 338, 656
PshAI	GACNNNNGTC	1 cut(s)	374
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	7 cut(s)	565, 571, 667, 676, 700, 730, 739
PspGI	CCWGG	7 cut(s)	565, 571, 667, 676, 700, 730, 739
PspN4I	GGNNCC	1 cut(s)	501
PspPI	GGNCC	4 cut(s)	131, 569, 629, 725
PsuI	RGATCY	1 cut(s)	499
RsaI	GTAC	2 cut(s)	113, 188
RsaNI	GTAC	2 cut(s)	112, 187
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	3 cut(s)	39, 337, 655
Sau3AI	GATC	5 cut(s)	30, 467, 499, 556, 637
Sau96I	GGNCC	4 cut(s)	131, 569, 629, 725
SduI	GDGCHC	3 cut(s)	120, 709, 753
SetI	ASST	9 cut(s)	53, 75, 120, 438, 496, 550, 601, 733, 761
SexAI	ACCWGGT	1 cut(s)	730
SfaNI	GCATC	1 cut(s)	259
SfcI	CTRYAG	1 cut(s)	543
SinI	GGWCC	1 cut(s)	629
SmaI	CCCGGG	1 cut(s)	784
SpeI	ACTAGT	1 cut(s)	428
SphI	GCATGC	1 cut(s)	622
Sse9I	AATT	6 cut(s)	257, 340, 361, 407, 471, 519
SsiI	CCGC	5 cut(s)	26, 38, 55, 153, 654
SspMI	CTAG	3 cut(s)	429, 594, 626
SstI	GAGCTC	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	354
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	2 cut(s)	297, 490
TasI	AATT	6 cut(s)	257, 340, 361, 407, 471, 519
TauI	GCSGC	2 cut(s)	41, 657
TfiI	GAWTC	3 cut(s)	149, 413, 769
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	1 cut(s)	378
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	1 cut(s)	336
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	2 cut(s)	263, 823
TspGWI	ACGGA	1 cut(s)	790
TspMI	CCCGGG	1 cut(s)	782
TspRI	CASTG	1 cut(s)	378
Van91I	CCANNNNNTGG	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	629
XagI	CCTNNNNNAGG	1 cut(s)	594
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	1 cut(s)	622
XmaI	CCCGGG	1 cut(s)	782
XmiI	GTMKAC	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	3 cut(s)	429, 594, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.