Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Reverse (-)

25549689 .. 25557768

Gene Structure 8080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G019600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGATTCAATTTCAAGCTTTGTACTCCGCTCCTTATTCTCATCCTCTCAGCCTCTTCTCTCGCGCCGTCACCATCCCCAACAGCCTGAGCCTCAGGAAGTGGGTATTGAGAAATGGAACGAGTTCAAGAATGAGTACGCGTTCGTGTATTTGAACCCGGAAAAGGGTTCGAAGAAGGTTCTGGTGAAGTGTCTTATGATTGATGGAACATTGAGTGTAGATGCTTTGGCTGATGGGGCTTCTCAAAACGTTCACTGTGAATTTAATAATTACTCATCACAGTTTAAGAACTTGGACACCCTAGTGAAGAATCTCAACGCTCAAGTTTTGTTGAAATTGGAGTCTTCCACACCCAAGGCAACAAGCCGAAAGCCGAACCGAAGCCGAAAAACACCGAACCGAACAAAAACTGCACCGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

140

Amino Acids

15.82

Weight (kDa)

9.66

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI31_Prot_N	PF11566	28 - 89	1.6e-08	PI31 proteasome regulator N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	30
AccII	CGCG	2 cut(s)	64, 140
AciI	CCGC	1 cut(s)	28
AclI	AACGTT	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	260
AfaI	GTAC	2 cut(s)	24, 137
AfiI	CCNNNNNNNGG	2 cut(s)	163, 164
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	5 cut(s)	9, 15, 127, 154, 334
AleI	CACNNNNGTG	1 cut(s)	302
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
ApoI	RAATTY	1 cut(s)	260
Asp700I	GAANNNNTTC	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	62, 196
AsuII	TTCGAA	1 cut(s)	170
AxyI	CCTNAGG	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	336
BccI	CCATC	3 cut(s)	81, 197, 227
BceAI	ACGGC	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	158
BfaI	CTAG	1 cut(s)	302
Bme1390I	CCNGG	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	336
Bpu10I	CCTNAGC	1 cut(s)	87
Bpu14I	TTCGAA	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 164
Bse21I	CCTNAGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	2 cut(s)	41, 73
BseLI	CCNNNNNNNGG	2 cut(s)	163, 164
BseMII	CTCAG	3 cut(s)	62, 78, 107
BsgI	GTGCAG	1 cut(s)	396
Bsh1236I	CGCG	2 cut(s)	64, 140
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	2 cut(s)	163, 164
Bsp119I	TTCGAA	1 cut(s)	170
BspACI	CCGC	1 cut(s)	28
BspCNI	CTCAG	3 cut(s)	61, 79, 106
BspFNI	CGCG	2 cut(s)	64, 140
BspT104I	TTCGAA	1 cut(s)	170
BsrBI	CCGCTC	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	354
BssT1I	CCWWGG	1 cut(s)	354
Bst4CI	ACNGT	2 cut(s)	257, 282
Bst6I	CTCTTC	1 cut(s)	60
BstBI	TTCGAA	1 cut(s)	170
BstDEI	CTNAG	3 cut(s)	48, 87, 93
BstF5I	GGATG	2 cut(s)	41, 73
BstFNI	CGCG	2 cut(s)	64, 140
BstHHI	GCGC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	156
BstUI	CGCG	2 cut(s)	64, 140
BstV2I	GAAGAC	1 cut(s)	336
Bsu36I	CCTNAGG	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	41, 73
BtsIMutI	CAGTG	1 cut(s)	253
CfoI	GCGC	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	23, 136
CviJI	RGCY	9 cut(s)	18, 52, 85, 91, 230, 239, 366, 373, 384
CviKI_1	RGCY	9 cut(s)	18, 52, 85, 91, 230, 239, 366, 373, 384
CviQI	GTAC	2 cut(s)	23, 136
DdeI	CTNAG	3 cut(s)	48, 87, 93
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	354
Eco81I	CCTNAGG	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
FaiI	YATR	1 cut(s)	197
FokI	GGATG	2 cut(s)	28, 60
FspBI	CTAG	1 cut(s)	302
GlaI	GCGC	1 cut(s)	65
HapII	CCGG	1 cut(s)	158
HhaI	GCGC	1 cut(s)	66
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HindIII	AAGCTT	1 cut(s)	16
HinfI	GANTC	3 cut(s)	5, 310, 341
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	2 cut(s)	62, 196
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188III	TCNNGA	2 cut(s)	95, 127
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	2 cut(s)	257, 282
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	3 cut(s)	48, 87, 93
HpySE526I	ACGT	1 cut(s)	249
HspAI	GCGC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	4 cut(s)	80, 99, 167, 171
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	1 cut(s)	302
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	68
MbiI	CCGCTC	1 cut(s)	30
MboII	GAAGA	4 cut(s)	47, 184, 319, 336
MluCI	AATT	4 cut(s)	9, 260, 268, 335
MluI	ACGCGT	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	350
MnlI	CCTC	3 cut(s)	55, 63, 102
MroXI	GAANNNNTTC	1 cut(s)	122
MseI	TTAA	2 cut(s)	264, 285
MslI	CAYNNNNRTG	2 cut(s)	302, 418
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	158
MvnI	CGCG	2 cut(s)	64, 140
MwoI	GCNNNNNNNGC	1 cut(s)	236
NciI	CCSGG	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	68
NspV	TTCGAA	1 cut(s)	170
OliI	CACNNNNGTG	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	5, 310
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
Psp1406I	AACGTT	1 cut(s)	249
RsaI	GTAC	2 cut(s)	24, 137
RsaNI	GTAC	2 cut(s)	23, 136
RseI	CAYNNNNRTG	2 cut(s)	302, 418
SaqAI	TTAA	2 cut(s)	264, 285
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	3 cut(s)	20, 180, 252
SfaNI	GCATC	1 cut(s)	211
SfuI	TTCGAA	1 cut(s)	170
SmiMI	CAYNNNNRTG	2 cut(s)	302, 418
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
Sse9I	AATT	4 cut(s)	9, 260, 268, 335
SsiI	CCGC	1 cut(s)	28
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	2 cut(s)	257, 282
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	170
TasI	AATT	4 cut(s)	9, 260, 268, 335
TatI	WGTACW	1 cut(s)	22
TfiI	GAWTC	2 cut(s)	5, 310
Tru1I	TTAA	2 cut(s)	264, 285
Tru9I	TTAA	2 cut(s)	264, 285
TscAI	CASTG	1 cut(s)	260
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
TspRI	CASTG	1 cut(s)	260
XapI	RAATTY	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	122
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.