Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Reverse (-)

47102250 .. 47109332

Gene Structure 7083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG232300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTTACTTGCAACCAATTTACTTTTTCTCCAAGTTCTAATCACAACTAAACCAGAGTCCCAGATAATGAAAAGGATGTTGTCAGAGGTGTTTGACAATCCTGCAGGTGATGCCGTGCCTCCAGAGTTGCTGGAGCATCCAATGGCCGCCAGCTATCAGATGCCTCAGCTGCAGCACCAGACTTCTGCGGCCCAGTGGTACGGAAGCCGACTAAACCTTTTGCCGTTCACGCCTTCTTCCTTGCCTCTGGCTACCGAGCCTCCTGCTTTCTCCGACTCTGCCCTCTCGTCGTCGTTCTCCACTTGCGATGAAGAAGTAGGAACCGACCAATGGAACGAGCTGGACGAGGAGTACGCGTTCCTTTACGCCAACCCAGAAAACAAGAAGTTGGTGCTGGTCAAGTGCCTTGTAATAAACCATAAACTGTTGGTTGATGCTTTAGCTCAAGGCAGTAGTTCCGAAACGGTCCATCTCCAAATCAACGTTGATGACTATGTTGGAGAGAGTAATAATAATGGCAGCAGCAATTTAAAGAATTTGGAGACATTGGTGAAGAGCCTGGACACTCAGGTTCTGTGTAAATTAGATACTTGTTCCTCAAGTCAACAAGGCCTCAAGTTCAATAACAAGTACAACAACGGAGCCTGGTGGTACTGGAAGAATCTATCTTTCTTGGCCGGGTGCTGGAATGTACACTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

233

Amino Acids

25.98

Weight (kDa)

4.77

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI31_Prot_N	PF11566	98 - 196	8.4e-15	PI31 proteasome regulator N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	95
Acc36I	ACCTGC	1 cut(s)	95
AccII	CGCG	1 cut(s)	356
AciI	CCGC	2 cut(s)	147, 188
AclI	AACGTT	1 cut(s)	483
AcoI	YGGCCR	2 cut(s)	144, 675
AcsI	RAATTY	1 cut(s)	535
AfaI	GTAC	5 cut(s)	200, 353, 632, 653, 693
AfiI	CCNNNNNNNGG	2 cut(s)	330, 684
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	1 cut(s)	622
AjnI	CCWGG	2 cut(s)	558, 644
AloI	GAACNNNNNNTCC	2 cut(s)	341, 373
AluBI	AGCT	4 cut(s)	153, 169, 340, 443
AluI	AGCT	4 cut(s)	153, 169, 340, 443
Alw26I	GTCTC	1 cut(s)	536
AlwNI	CAGNNNCTG	1 cut(s)	574
AoxI	GGCC	4 cut(s)	144, 189, 610, 675
ApeKI	GCWGC	4 cut(s)	169, 172, 519, 522
ApoI	RAATTY	1 cut(s)	535
AspS9I	GGNCC	2 cut(s)	190, 466
AsuC2I	CCSGG	1 cut(s)	679
AsuHPI	GGTGA	2 cut(s)	119, 562
AvaII	GGWCC	1 cut(s)	466
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	4 cut(s)	156, 184, 531, 534
BccI	CCATC	1 cut(s)	477
BceAI	ACGGC	2 cut(s)	98, 208
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciT130I	CCWGG	2 cut(s)	560, 646
BcnI	CCSGG	1 cut(s)	679
BcoDI	GTCTC	1 cut(s)	536
BfaI	CTAG	1 cut(s)	700
BfmI	CTRYAG	2 cut(s)	102, 170
BfuAI	ACCTGC	1 cut(s)	95
BisI	GCNGC	6 cut(s)	147, 170, 173, 189, 520, 523
BlsI	GCNGC	6 cut(s)	148, 171, 174, 190, 521, 524
Bme1390I	CCNGG	3 cut(s)	560, 646, 679
Bme18I	GGWCC	1 cut(s)	466
BmgT120I	GGNCC	2 cut(s)	190, 466
BmiI	GGNNCC	2 cut(s)	322, 643
BmrFI	CCNGG	3 cut(s)	560, 646, 679
BmrI	ACTGGG	1 cut(s)	187
BmsI	GCATC	4 cut(s)	100, 145, 150, 424
BmuI	ACTGGG	1 cut(s)	187
BpmI	CTGGAG	2 cut(s)	105, 152
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	3 cut(s)	429, 583, 599
BpuMI	CCSGG	1 cut(s)	679
BsaXI	ACNNNNNCTCC	6 cut(s)	12, 42, 244, 274, 341, 371
Bsc4I	CCNNNNNNNGG	2 cut(s)	330, 684
Bse1I	ACTGG	2 cut(s)	193, 659
BseBI	CCWGG	2 cut(s)	560, 646
BseGI	GGATG	2 cut(s)	81, 136
BseLI	CCNNNNNNNGG	2 cut(s)	330, 684
BseMII	CTCAG	2 cut(s)	179, 581
BseNI	ACTGG	2 cut(s)	193, 659
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	4 cut(s)	156, 184, 531, 534
Bsh1236I	CGCG	1 cut(s)	356
BshFI	GGCC	4 cut(s)	146, 191, 612, 677
BsiSI	CCGG	1 cut(s)	678
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	2 cut(s)	330, 684
BsmAI	GTCTC	1 cut(s)	536
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	4 cut(s)	146, 191, 612, 677
Bsp1407I	TGTACA	1 cut(s)	691
BspACI	CCGC	2 cut(s)	147, 188
BspANI	GGCC	4 cut(s)	146, 191, 612, 677
BspCNI	CTCAG	2 cut(s)	178, 580
BspFNI	CGCG	1 cut(s)	356
BspLI	GGNNCC	2 cut(s)	322, 643
BspMAI	CTGCAG	2 cut(s)	106, 174
BspMI	ACCTGC	1 cut(s)	95
BspQI	GCTCTTC	1 cut(s)	548
BsrGI	TGTACA	1 cut(s)	691
BsrI	ACTGG	2 cut(s)	193, 659
Bst2UI	CCWGG	2 cut(s)	560, 646
Bst4CI	ACNGT	2 cut(s)	426, 466
Bst6I	CTCTTC	1 cut(s)	548
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstAUI	TGTACA	1 cut(s)	691
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	2 cut(s)	165, 567
BstF5I	GGATG	2 cut(s)	81, 136
BstFNI	CGCG	1 cut(s)	356
BstMAI	GTCTC	1 cut(s)	536
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 169, 229
BstNI	CCWGG	2 cut(s)	560, 646
BstSCI	CCNGG	3 cut(s)	558, 644, 677
BstSFI	CTRYAG	2 cut(s)	102, 170
BstUI	CGCG	1 cut(s)	356
BstV1I	GCAGC	4 cut(s)	156, 184, 531, 534
BsuRI	GGCC	4 cut(s)	146, 191, 612, 677
BtgZI	GCGATG	1 cut(s)	321
BtsCI	GGATG	2 cut(s)	81, 136
BtsI	GCAGTG	1 cut(s)	694
BtsIMutI	CAGTG	2 cut(s)	200, 694
BveI	ACCTGC	1 cut(s)	95
Cac8I	GCNNGC	1 cut(s)	151
CaiI	CAGNNNCTG	1 cut(s)	574
Cfr13I	GGNCC	2 cut(s)	190, 466
Csp6I	GTAC	5 cut(s)	199, 352, 631, 652, 692
CviQI	GTAC	5 cut(s)	199, 352, 631, 652, 692
DdeI	CTNAG	2 cut(s)	165, 567
DraI	TTTAAA	1 cut(s)	531
EaeI	YGGCCR	2 cut(s)	144, 675
Eam1104I	CTCTTC	1 cut(s)	548
EarI	CTCTTC	1 cut(s)	548
Eco147I	AGGCCT	1 cut(s)	612
Eco47I	GGWCC	1 cut(s)	466
EcoRII	CCWGG	2 cut(s)	558, 644
FaiI	YATR	2 cut(s)	420, 495
FaqI	GGGAC	1 cut(s)	43
Fnu4HI	GCNGC	6 cut(s)	147, 170, 173, 189, 520, 523
FokI	GGATG	2 cut(s)	88, 123
Fsp4HI	GCNGC	6 cut(s)	147, 170, 173, 189, 520, 523
FspBI	CTAG	1 cut(s)	700
GluI	GCNGC	6 cut(s)	147, 170, 173, 189, 520, 523
GsuI	CTGGAG	2 cut(s)	105, 152
HaeIII	GGCC	4 cut(s)	146, 191, 612, 677
HapII	CCGG	1 cut(s)	678
HincII	GTYRAC	1 cut(s)	605
HindII	GTYRAC	1 cut(s)	605
HinfI	GANTC	3 cut(s)	56, 275, 661
HpaII	CCGG	1 cut(s)	678
HphI	GGTGA	2 cut(s)	119, 562
Hpy166II	GTNNAC	3 cut(s)	228, 605, 694
Hpy188I	TCNGA	4 cut(s)	85, 159, 274, 460
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	3 cut(s)	228, 605, 694
Hpy99I	CGWCG	2 cut(s)	292, 295
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	2 cut(s)	426, 466
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	3 cut(s)	11, 104, 172
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 169, 229
HpyF3I	CTNAG	2 cut(s)	165, 567
HpySE526I	ACGT	1 cut(s)	483
LguI	GCTCTTC	1 cut(s)	548
LmnI	GCTCC	2 cut(s)	133, 641
Lsp1109I	GCAGC	4 cut(s)	156, 184, 531, 534
LweI	GCATC	4 cut(s)	100, 145, 150, 424
MaeI	CTAG	1 cut(s)	700
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	1 cut(s)	3
MboII	GAAGA	4 cut(s)	228, 323, 565, 670
MluCI	AATT	4 cut(s)	16, 526, 535, 581
MluI	ACGCGT	1 cut(s)	354
MlyI	GAGTC	2 cut(s)	65, 269
MmeI	TCCRAC	2 cut(s)	297, 478
MnlI	CCTC	9 cut(s)	79, 129, 174, 255, 270, 293, 340, 607, 623
MseI	TTAA	1 cut(s)	530
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	1 cut(s)	678
MspR9I	CCNGG	3 cut(s)	560, 646, 679
MvaI	CCWGG	2 cut(s)	560, 646
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	3 cut(s)	110, 169, 229
NciI	CCSGG	1 cut(s)	679
NlaIV	GGNNCC	2 cut(s)	322, 643
PaqCI	CACCTGC	1 cut(s)	95
PceI	AGGCCT	1 cut(s)	612
PciSI	GCTCTTC	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	661
PkrI	GCNGC	6 cut(s)	148, 171, 174, 190, 521, 524
PleI	GAGTC	2 cut(s)	64, 269
PpsI	GAGTC	2 cut(s)	64, 269
Psp1406I	AACGTT	1 cut(s)	483
Psp6I	CCWGG	2 cut(s)	558, 644
PspGI	CCWGG	2 cut(s)	558, 644
PspN4I	GGNNCC	2 cut(s)	322, 643
PspPI	GGNCC	2 cut(s)	190, 466
PstI	CTGCAG	2 cut(s)	106, 174
PstNI	CAGNNNCTG	1 cut(s)	574
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	5 cut(s)	200, 353, 632, 653, 693
RsaNI	GTAC	5 cut(s)	199, 352, 631, 652, 692
SapI	GCTCTTC	1 cut(s)	548
SaqAI	TTAA	1 cut(s)	530
SatI	GCNGC	6 cut(s)	147, 170, 173, 189, 520, 523
Sau96I	GGNCC	2 cut(s)	190, 466
SbfI	CCTGCAGG	1 cut(s)	106
SchI	GAGTC	2 cut(s)	65, 269
ScrFI	CCNGG	3 cut(s)	560, 646, 679
SdaI	CCTGCAGG	1 cut(s)	106
SetI	ASST	9 cut(s)	90, 109, 155, 171, 219, 342, 445, 486, 573
SfaNI	GCATC	4 cut(s)	100, 145, 150, 424
SfcI	CTRYAG	2 cut(s)	102, 170
SinI	GGWCC	1 cut(s)	466
SmlI	CTYRAG	3 cut(s)	444, 598, 614
SmoI	CTYRAG	3 cut(s)	444, 598, 614
Sse8387I	CCTGCAGG	1 cut(s)	106
Sse9I	AATT	4 cut(s)	16, 526, 535, 581
SseBI	AGGCCT	1 cut(s)	612
SsiI	CCGC	2 cut(s)	147, 188
SspMI	CTAG	1 cut(s)	700
StuI	AGGCCT	1 cut(s)	612
StyD4I	CCNGG	3 cut(s)	558, 644, 677
TaaI	ACNGT	2 cut(s)	426, 466
TaiI	ACGT	1 cut(s)	486
TasI	AATT	4 cut(s)	16, 526, 535, 581
TatI	WGTACW	2 cut(s)	630, 691
TauI	GCSGC	2 cut(s)	149, 191
TfiI	GAWTC	1 cut(s)	661
Tru1I	TTAA	1 cut(s)	530
Tru9I	TTAA	1 cut(s)	530
TscAI	CASTG	2 cut(s)	200, 701
TseI	GCWGC	4 cut(s)	169, 172, 519, 522
TspDTI	ATGAA	2 cut(s)	83, 324
TspGWI	ACGGA	2 cut(s)	216, 654
TspRI	CASTG	2 cut(s)	200, 701
VpaK11BI	GGWCC	1 cut(s)	466
XapI	RAATTY	1 cut(s)	535
XspI	CTAG	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.