Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Reverse (-)

7701663 .. 7704394

Gene Structure 2732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g12740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCAAACGAAAAGTCGGTAATGGCGGTCATCCGAGCCGCACGCCCATCTTTCCGCAACCCCAACGACAAGGTCGCCTTCGCCGTCCACGCTTCCTTCGTCGCCTCCGGCTACCACTTAATCGCCGCCGGCCGCTCCGCCTTTTCCGAAACTGCCCTCTCCTCGACATCAACTGAGGAAGTGGGTATTGAGAATTGGAACGAACTGGAGAACGAGTACGCGTTCGTGTATTCGAACCCGGAGAAGGGTTCGAAGAAGATTGTGGTCAAGTGTCTTGTTATTAATGGAACATTGAGTGTGGATGCTGTGGCTGATGGGGCTTCTCAGAATGTTCATTGTGAATTCAATGTTGGTGATTATGTGCAAGAAAATGAGGGGAGTAATTACTCTGCACAGTTTAAGAATTTGGACAGCTTGGTGAAGAATCTTGGTACTCTAGTTTTGTTGAAATTGGAGGAGAGTTCCACGCCCAAACCGATAAGAGTTGGATATCAACCTGTTAATGTCGGCGGTAGTGATGAGGATCTTTACACTGGGCCTGGTGCTGGAAGGCATCCGGGTGATGGTGATGATCTTTATCCTGGGACTGGCACTGGTCCTGCGAGGTTTCCAGTGGGTGGTGGCGATCTTTATCCTGGACCTGGTGCTGGAATGCCTTCCAGGGGTGGTTTTGACGATGGAAGCATGTTTGTAGGACCCAATGATCGTAGATTTGGTGGCGTTGGACAACCTGGGTTTCCGGGGTTTCCTGGAGGACTACCGGGTGTTCCCGATCCTCGTTTTGGTGCTGAAAGCCCATTTGGTCTTCCTCCAGGTGCTCGGTTCGATCCATATGGCCCCCCTGGTATTCCCGATTTTGATCCAGATTTTGCAAGGCGCCCACAGGGTCCAGGACGCAGGATACACCCTGACTTGGAGCAACCCGGGAGTGGTTCGGACTTTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

316

Amino Acids

33.12

Weight (kDa)

4.88

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI31_Prot_N	PF11566	15 - 154	5.8e-24	PI31 proteasome regulator N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	876
AccB7I	CCANNNNNTGG	1 cut(s)	617
AccBSI	CCGCTC	1 cut(s)	135
AccII	CGCG	1 cut(s)	221
AciI	CCGC	7 cut(s)	26, 39, 55, 126, 133, 138, 510
AclWI	GGATC	4 cut(s)	531, 767, 821, 854
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	2 cut(s)	341, 403
AcyI	GRCGYC	1 cut(s)	877
AfaI	GTAC	2 cut(s)	218, 433
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	2 cut(s)	346, 448
AjuI	GAANNNNNNNTTGG	4 cut(s)	333, 365, 783, 815
AluBI	AGCT	1 cut(s)	414
AluI	AGCT	1 cut(s)	414
Alw21I	GWGCWC	1 cut(s)	820
AlwI	GGATC	4 cut(s)	531, 767, 821, 854
Ama87I	CYCGRG	1 cut(s)	923
AoxI	GGCC	3 cut(s)	130, 536, 835
ApoI	RAATTY	2 cut(s)	341, 403
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AseI	ATTAAT	1 cut(s)	282
Asp700I	GAANNNNTTC	1 cut(s)	655
AspLEI	GCGC	1 cut(s)	879
AspS9I	GGNCC	6 cut(s)	536, 596, 638, 695, 836, 887
AsuC2I	CCSGG	6 cut(s)	239, 558, 741, 762, 924, 925
AsuHPI	GGTGA	4 cut(s)	365, 430, 572, 578
AsuII	TTCGAA	2 cut(s)	233, 251
AvaI	CYCGRG	1 cut(s)	923
AvaII	GGWCC	4 cut(s)	596, 638, 695, 887
BaeI	ACNNNNGTAYC	2 cut(s)	423, 456
BanI	GGYRCC	1 cut(s)	876
BbsI	GAAGAC	1 cut(s)	797
Bbv12I	GWGCWC	1 cut(s)	820
BccI	CCATC	4 cut(s)	55, 308, 557, 671
BceAI	ACGGC	1 cut(s)	68
BciVI	GTATCC	1 cut(s)	894
BcnI	CCSGG	6 cut(s)	239, 558, 741, 762, 924, 925
BfaI	CTAG	2 cut(s)	437, 946
BfoI	RGCGCY	1 cut(s)	880
BfuI	GTATCC	1 cut(s)	894
BisI	GCNGC	3 cut(s)	39, 126, 133
BlsI	GCNGC	3 cut(s)	40, 127, 134
Bme18I	GGWCC	4 cut(s)	596, 638, 695, 887
BmeT110I	CYCGRG	1 cut(s)	923
BmgT120I	GGNCC	6 cut(s)	536, 596, 638, 695, 836, 887
BmiI	GGNNCC	4 cut(s)	697, 838, 878, 888
BmrI	ACTGGG	1 cut(s)	543
BmsI	GCATC	2 cut(s)	292, 562
BmuI	ACTGGG	1 cut(s)	543
BpiI	GAAGAC	1 cut(s)	797
BpmI	CTGGAG	3 cut(s)	227, 771, 795
Bpu14I	TTCGAA	2 cut(s)	233, 251
BpuMI	CCSGG	6 cut(s)	239, 558, 741, 762, 924, 925
BsaBI	GATNNNNATC	4 cut(s)	522, 576, 630, 858
BsaHI	GRCGYC	1 cut(s)	877
BsaJI	CCNNGG	6 cut(s)	581, 660, 731, 740, 841, 923
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	5 cut(s)	210, 538, 592, 598, 611
Bse8I	GATNNNNATC	4 cut(s)	522, 576, 630, 858
BseDI	CCNNGG	6 cut(s)	581, 660, 731, 740, 841, 923
BseGI	GGATG	3 cut(s)	30, 307, 553
BseJI	GATNNNNATC	4 cut(s)	522, 576, 630, 858
BseMII	CTCAG	2 cut(s)	165, 338
BseNI	ACTGG	5 cut(s)	210, 538, 592, 598, 611
BseRI	GAGGAG	2 cut(s)	151, 470
BseX3I	CGGCCG	1 cut(s)	130
BsgI	GTGCAG	1 cut(s)	375
Bsh1236I	CGCG	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	3 cut(s)	132, 538, 837
BshNI	GGYRCC	1 cut(s)	876
BsiEI	CGRYCG	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	820
BsiHKCI	CYCGRG	1 cut(s)	923
BsiSI	CCGG	7 cut(s)	108, 129, 239, 557, 740, 761, 924
BslFI	GGGAC	1 cut(s)	598
BsmFI	GGGAC	1 cut(s)	598
BsmI	GAATGC	1 cut(s)	657
BsnI	GGCC	3 cut(s)	132, 538, 837
BsoBI	CYCGRG	1 cut(s)	923
Bsp119I	TTCGAA	2 cut(s)	233, 251
Bsp1286I	GDGCHC	1 cut(s)	820
Bsp143I	GATC	7 cut(s)	523, 571, 625, 703, 772, 826, 859
BspACI	CCGC	7 cut(s)	26, 39, 55, 126, 133, 138, 510
BspANI	GGCC	3 cut(s)	132, 538, 837
BspCNI	CTCAG	2 cut(s)	166, 337
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	4 cut(s)	697, 838, 878, 888
BspPI	GGATC	4 cut(s)	531, 767, 821, 854
BspT104I	TTCGAA	2 cut(s)	233, 251
BspT107I	GGYRCC	1 cut(s)	876
BsrBI	CCGCTC	1 cut(s)	135
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	5 cut(s)	210, 538, 592, 598, 611
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	6 cut(s)	581, 660, 731, 740, 841, 923
BssMI	GATC	7 cut(s)	523, 571, 625, 703, 772, 826, 859
BssNI	GRCGYC	1 cut(s)	877
Bst4CI	ACNGT	1 cut(s)	396
BstACI	GRCGYC	1 cut(s)	877
BstBI	TTCGAA	2 cut(s)	233, 251
BstC8I	GCNNGC	2 cut(s)	43, 130
BstDEI	CTNAG	2 cut(s)	174, 324
BstF5I	GGATG	3 cut(s)	30, 307, 553
BstFNI	CGCG	1 cut(s)	221
BstH2I	RGCGCY	1 cut(s)	880
BstHHI	GCGC	1 cut(s)	879
BstKTI	GATC	7 cut(s)	526, 574, 628, 706, 775, 829, 862
BstMBI	GATC	7 cut(s)	523, 571, 625, 703, 772, 826, 859
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 317
BstNSI	RCATGY	1 cut(s)	688
BstUI	CGCG	1 cut(s)	221
BstV2I	GAAGAC	1 cut(s)	797
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BstZI	CGGCCG	1 cut(s)	130
BsuI	GTATCC	1 cut(s)	894
BsuRI	GGCC	3 cut(s)	132, 538, 837
BtsCI	GGATG	3 cut(s)	30, 307, 553
BtsIMutI	CAGTG	3 cut(s)	531, 591, 618
Cac8I	GCNNGC	2 cut(s)	43, 130
CfoI	GCGC	1 cut(s)	879
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	6 cut(s)	536, 596, 638, 695, 836, 887
Cfr9I	CCCGGG	1 cut(s)	923
CseI	GACGC	1 cut(s)	903
CsiI	ACCWGGT	1 cut(s)	640
Csp6I	GTAC	2 cut(s)	217, 432
CviAII	CATG	1 cut(s)	685
CviJI	RGCY	9 cut(s)	38, 111, 132, 311, 320, 414, 538, 795, 837
CviKI_1	RGCY	9 cut(s)	38, 111, 132, 311, 320, 414, 538, 795, 837
CviQI	GTAC	2 cut(s)	217, 432
DdeI	CTNAG	2 cut(s)	174, 324
DinI	GGCGCC	1 cut(s)	878
DpnI	GATC	7 cut(s)	525, 573, 627, 705, 774, 828, 861
DpnII	GATC	7 cut(s)	523, 571, 625, 703, 772, 826, 859
EaeI	YGGCCR	1 cut(s)	130
EagI	CGGCCG	1 cut(s)	130
EciI	GGCGGA	1 cut(s)	127
EclXI	CGGCCG	1 cut(s)	130
Eco32I	GATATC	1 cut(s)	491
Eco47I	GGWCC	4 cut(s)	596, 638, 695, 887
Eco52I	CGGCCG	1 cut(s)	130
Eco88I	CYCGRG	1 cut(s)	923
EcoO109I	RGGNCCY	1 cut(s)	695
EcoRI	GAATTC	1 cut(s)	341
EcoRV	GATATC	1 cut(s)	491
EgeI	GGCGCC	1 cut(s)	878
EheI	GGCGCC	1 cut(s)	878
FaeI	CATG	1 cut(s)	688
FaiI	YATR	4 cut(s)	360, 686, 832, 834
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	598
FatI	CATG	1 cut(s)	684
FauNDI	CATATG	1 cut(s)	832
Fnu4HI	GCNGC	3 cut(s)	39, 126, 133
FokI	GGATG	3 cut(s)	17, 314, 540
Fsp4HI	GCNGC	3 cut(s)	39, 126, 133
FspBI	CTAG	2 cut(s)	437, 946
GlaI	GCGC	1 cut(s)	878
GluI	GCNGC	3 cut(s)	39, 126, 133
GsuI	CTGGAG	3 cut(s)	227, 771, 795
HaeII	RGCGCY	1 cut(s)	880
HaeIII	GGCC	3 cut(s)	132, 538, 837
HapII	CCGG	7 cut(s)	108, 129, 239, 557, 740, 761, 924
HgaI	GACGC	1 cut(s)	903
HhaI	GCGC	1 cut(s)	879
Hin1I	GRCGYC	1 cut(s)	877
Hin1II	CATG	1 cut(s)	688
Hin6I	GCGC	1 cut(s)	877
HinP1I	GCGC	1 cut(s)	877
HinfI	GANTC	1 cut(s)	424
HpaII	CCGG	7 cut(s)	108, 129, 239, 557, 740, 761, 924
HphI	GGTGA	4 cut(s)	365, 430, 572, 578
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	4 cut(s)	35, 148, 327, 937
Hpy188III	TCNNGA	3 cut(s)	770, 851, 863
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	5 cut(s)	88, 106, 238, 543, 666
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4V	TGCA	3 cut(s)	364, 392, 872
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 317
HpyF3I	CTNAG	2 cut(s)	174, 324
Hsp92I	GRCGYC	1 cut(s)	877
Hsp92II	CATG	1 cut(s)	688
HspAI	GCGC	1 cut(s)	877
KasI	GGCGCC	1 cut(s)	876
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
Kzo9I	GATC	7 cut(s)	523, 571, 625, 703, 772, 826, 859
LmnI	GCTCC	2 cut(s)	140, 916
LweI	GCATC	2 cut(s)	292, 562
MabI	ACCWGGT	1 cut(s)	640
MaeI	CTAG	2 cut(s)	437, 946
MalI	GATC	7 cut(s)	525, 573, 627, 705, 774, 828, 861
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	7 cut(s)	523, 571, 625, 703, 772, 826, 859
MboII	GAAGA	4 cut(s)	265, 268, 433, 797
MflI	RGATCY	1 cut(s)	523
MhlI	GDGCHC	1 cut(s)	820
MluCI	AATT	5 cut(s)	193, 341, 382, 403, 449
MluI	ACGCGT	1 cut(s)	219
Mly113I	GGCGCC	1 cut(s)	877
MmeI	TCCRAC	2 cut(s)	466, 703
MroNI	GCCGGC	1 cut(s)	128
MroXI	GAANNNNTTC	1 cut(s)	655
MseI	TTAA	4 cut(s)	119, 282, 399, 501
MslI	CAYNNNNRTG	1 cut(s)	558
MspI	CCGG	7 cut(s)	108, 129, 239, 557, 740, 761, 924
Mva1269I	GAATGC	1 cut(s)	657
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	89, 317
NaeI	GCCGGC	1 cut(s)	130
NarI	GGCGCC	1 cut(s)	877
NciI	CCSGG	6 cut(s)	239, 558, 741, 762, 924, 925
NdeI	CATATG	1 cut(s)	832
NdeII	GATC	7 cut(s)	523, 571, 625, 703, 772, 826, 859
NgoMIV	GCCGGC	1 cut(s)	128
NlaIII	CATG	1 cut(s)	688
NlaIV	GGNNCC	4 cut(s)	697, 838, 878, 888
NspI	RCATGY	1 cut(s)	688
NspV	TTCGAA	2 cut(s)	233, 251
PcsI	WCGNNNNNNNCGW	3 cut(s)	81, 96, 473
PctI	GAATGC	1 cut(s)	657
PdiI	GCCGGC	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	655
PfeI	GAWTC	1 cut(s)	424
PflFI	GACNNNGTC	1 cut(s)	71
PflMI	CCANNNNNTGG	1 cut(s)	617
PfoI	TCCNGGA	3 cut(s)	634, 748, 889
PkrI	GCNGC	3 cut(s)	40, 127, 134
PluTI	GGCGCC	1 cut(s)	880
PpuMI	RGGWCCY	1 cut(s)	695
PshBI	ATTAAT	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	695
PspN4I	GGNNCC	4 cut(s)	697, 838, 878, 888
PspPI	GGNCC	6 cut(s)	536, 596, 638, 695, 836, 887
PspPPI	RGGWCCY	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	523
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	2 cut(s)	218, 433
RsaNI	GTAC	2 cut(s)	217, 432
RseI	CAYNNNNRTG	1 cut(s)	558
SaqAI	TTAA	4 cut(s)	119, 282, 399, 501
SatI	GCNGC	3 cut(s)	39, 126, 133
Sau3AI	GATC	7 cut(s)	523, 571, 625, 703, 772, 826, 859
Sau96I	GGNCC	6 cut(s)	536, 596, 638, 695, 836, 887
SduI	GDGCHC	1 cut(s)	820
SetI	ASST	7 cut(s)	75, 416, 499, 608, 643, 733, 817
SexAI	ACCWGGT	1 cut(s)	640
SfaNI	GCATC	2 cut(s)	292, 562
SfoI	GGCGCC	1 cut(s)	878
SfuI	TTCGAA	2 cut(s)	233, 251
SinI	GGWCC	4 cut(s)	596, 638, 695, 887
SmaI	CCCGGG	1 cut(s)	925
SmiMI	CAYNNNNRTG	1 cut(s)	558
Sse9I	AATT	5 cut(s)	193, 341, 382, 403, 449
SsiI	CCGC	7 cut(s)	26, 39, 55, 126, 133, 138, 510
SspDI	GGCGCC	1 cut(s)	876
SspMI	CTAG	2 cut(s)	437, 946
TaaI	ACNGT	1 cut(s)	396
TaqI	TCGA	4 cut(s)	164, 233, 251, 825
TasI	AATT	5 cut(s)	193, 341, 382, 403, 449
TauI	GCSGC	3 cut(s)	41, 128, 135
TfiI	GAWTC	1 cut(s)	424
Tru1I	TTAA	4 cut(s)	119, 282, 399, 501
Tru9I	TTAA	4 cut(s)	119, 282, 399, 501
TscAI	CASTG	3 cut(s)	538, 598, 618
TspDTI	ATGAA	1 cut(s)	323
TspMI	CCCGGG	1 cut(s)	923
TspRI	CASTG	3 cut(s)	538, 598, 618
Tth111I	GACNNNGTC	1 cut(s)	71
Van91I	CCANNNNNTGG	1 cut(s)	617
VpaK11BI	GGWCC	4 cut(s)	596, 638, 695, 887
VspI	ATTAAT	1 cut(s)	282
XapI	RAATTY	2 cut(s)	341, 403
XceI	RCATGY	1 cut(s)	688
XmaI	CCCGGG	1 cut(s)	923
XmnI	GAANNNNTTC	1 cut(s)	655
XspI	CTAG	2 cut(s)	437, 946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.