Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001218

Physical Location & Seq

Genomic Coordinates Forward (+)

11557353 .. 11557908

Gene Structure 556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0074500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTTGACAAGGCAGTGAACAAGTTTCTTATAAGGGAGTTCAGAGCAGACACCGATATTGAAGTGGTGGGGAAGCTAGAGAGGAACTGTGAGCTAGGGTCTAAAAGGGGATTCTCCATTTTCACTAACATGATGTGTGGCCCTTTATGTAGGATTAGGTTCTACCCCCTTCATATTATGCTGGTAGCACAGCTGCTTGAAAATGAGGAGCTTGTTGGAGTGGTTCGAGGATGCATCAAGCATGTGGGGACTGGTTTTGGGGGAGTACATGTGATGGGTTGCATACTAGGCCTTCGAGTCTCTCCCACACACCGGCTTTATGTATTTATATGCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

112

Amino Acids

12.59

Weight (kDa)

8.86

Isoelectric Point (pI)

28.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48530 AT3G53970 AT3G53970
fragaria_vesca	FvH4_4g10740 FvH4_4g10740 FvH4_6g12740
malus_domestica	MD04G1138800.v1.1 MD12G1154600.v1.1
prunus_persica	Prupe.6G264400_v2.0.a1
pyrus_communis	pycom12g14680
rosa_chinensis	RchiOBHm_Chr3g0464661 RchiOBHm_Chr4g0406841 RchiOBHm_Chr4g0416021 RchiOBHm_Chr4g0419261 RchiOBHm_Chr5g0047111 RchiOBHm_Chr6g0273171
rosa_laevigata	RLG00000007821 RLG00000008752 RLG00000024677 RLG00000027129
rosa_multiflora	Rmu_sc0002031.1_g000004 Rmu_sc0002316.1_g000083 Rmu_sc0004932.1_g000003 Rmu_sc0008087.1_g000005 Rmu_sc0030142.1_g000001 Rmu_sc0042118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034330 Rroxscaffold_5G00362230 Rroxscaffold_6G00415480 Rroxscaffold_6G00417790
rosa_rugosa	Rorug03G0073600 Rorug04G0074500 Rorug04G0157800
rosa_samantha	Rh2AG335700 Rh2AG421800 Rh2CG188400 Rh2CG409000 Rh3BG135900 Rh3CG138500 Rh3DG137500 Rh4AG141300 Rh4BG137800 Rh4CG148000 Rh4CG232300 Rh4DG135100 Rh5AG387600 Rh5BG419600 Rh5CG456900 Rh5CG457000 Rh5DG415700 Rh6DG223400
rosa_wichuraiana	Rw3G011130 Rw4G011500 Rw4G018780 Rw5G019600 Rw6G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	32
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	1 cut(s)	312
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	62, 200
AluBI	AGCT	4 cut(s)	76, 94, 193, 211
AluI	AGCT	4 cut(s)	76, 94, 193, 211
Alw26I	GTCTC	1 cut(s)	304
AoxI	GGCC	2 cut(s)	139, 289
ApeKI	GCWGC	1 cut(s)	193
AspS9I	GGNCC	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	3 cut(s)	77, 95, 287
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	140
BmsI	GCATC	2 cut(s)	221, 243
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse118I	RCCGGY	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	236
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	180
BshFI	GGCC	2 cut(s)	141, 291
BsiSI	CCGG	1 cut(s)	313
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	2 cut(s)	141, 291
BspANI	GGCC	2 cut(s)	141, 291
BsrFI	RCCGGY	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	256
BssAI	RCCGGY	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	236
BstMAI	GTCTC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstNSI	RCATGY	2 cut(s)	245, 272
BstV1I	GCAGC	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	141, 291
BtsCI	GGATG	1 cut(s)	236
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	312
Cfr13I	GGNCC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	266
CviAII	CATG	3 cut(s)	130, 242, 269
CviJI	RGCY	7 cut(s)	76, 94, 141, 193, 211, 291, 316
CviKI_1	RGCY	7 cut(s)	76, 94, 141, 193, 211, 291, 316
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	1 cut(s)	336
Eco147I	AGGCCT	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	236
FaeI	CATG	3 cut(s)	133, 245, 272
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	3 cut(s)	129, 241, 268
Fnu4HI	GCNGC	1 cut(s)	194
FokI	GGATG	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	194
FspBI	CTAG	3 cut(s)	77, 95, 287
GluI	GCNGC	1 cut(s)	194
HaeIII	GGCC	2 cut(s)	141, 291
HapII	CCGG	1 cut(s)	313
Hin1II	CATG	3 cut(s)	133, 245, 272
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	2 cut(s)	111, 297
HpaII	CCGG	1 cut(s)	313
Hpy166II	GTNNAC	2 cut(s)	7, 19
Hpy188I	TCNGA	1 cut(s)	44
Hpy8I	GTNNAC	2 cut(s)	7, 19
HpyAV	CCTTC	2 cut(s)	179, 302
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4V	TGCA	3 cut(s)	234, 282, 333
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	3 cut(s)	133, 245, 272
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	3 cut(s)	167, 237, 326
Lsp1109I	GCAGC	1 cut(s)	180
LweI	GCATC	2 cut(s)	221, 243
MaeI	CTAG	3 cut(s)	77, 95, 287
MlyI	GAGTC	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	3 cut(s)	75, 199, 221
Mph1103I	ATGCAT	1 cut(s)	236
MslI	CAYNNNNRTG	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	193
MspI	CCGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	1 cut(s)	288
NlaIII	CATG	3 cut(s)	133, 245, 272
NsiI	ATGCAT	1 cut(s)	236
NspI	RCATGY	2 cut(s)	245, 272
PceI	AGGCCT	1 cut(s)	291
PciI	ACATGT	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	111
PkrI	GCNGC	1 cut(s)	195
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
PscI	ACATGT	1 cut(s)	268
PsiI	TTATAA	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
RseI	CAYNNNNRTG	1 cut(s)	128
SatI	GCNGC	1 cut(s)	194
Sau96I	GGNCC	1 cut(s)	140
SchI	GAGTC	1 cut(s)	306
SetI	ASST	5 cut(s)	78, 96, 161, 195, 213
SfaNI	GCATC	2 cut(s)	221, 243
SmiMI	CAYNNNNRTG	1 cut(s)	128
SseBI	AGGCCT	1 cut(s)	291
SspMI	CTAG	3 cut(s)	77, 95, 287
StuI	AGGCCT	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	89
TaqI	TCGA	2 cut(s)	226, 295
TatI	WGTACW	1 cut(s)	265
TfiI	GAWTC	1 cut(s)	111
TscAI	CASTG	1 cut(s)	21
TseI	GCWGC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	21
XceI	RCATGY	2 cut(s)	245, 272
XspI	CTAG	3 cut(s)	77, 95, 287
Zsp2I	ATGCAT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.