AT1G61600

Protein of unknown function (DUF1262)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001480
Physical Location & Seq
Forward (+)
22729816 .. 22731332
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61600.1

Sequence Viewer

Length: 1266 bp
ATGTACGTGACGAGAACATTGTCGCAGTTCAGAAAATATCAGAAGACGCTCTCGGAAGAGTCACCGGAAGGTCCGTTCTCCGGCGTTTTGGTTATCACAGATGAAGAAGCTGAAACAGAGGATACGTTCTGTTTCGGGATGTGTACGAGGACAAAAATAGAGAAGCTTCCGTTACCTCAGGACAAGATCTTATCAGTTGTTCACTTAGACAGTTCTGGTAACAGAGAGACTTCGGTTAAGAAGGTCTTGTTCATACCGGCTCTCGATCAACCTTTGTCTTCCAATCGGTATTACGTTGTTCACGCTAGAGGCAGACACAAAGGGAAAGTTTCCGTGTGTTCTAGAGAGATAGAGAAAGGGGTATGTTGTTTTCCAGATATCTTGCATGACAAGAAACCTAAACCTCTGGATCCAAGAAACATATATCAGACGGTTAAGATCAACCGGCATCACGACCGGACATTCTATGCAAAATCTGTGGCGCCAGACGGTACACCGCCAACATTTCTCAAGAAGAAAGGATGGGAGCTACGAACCTCGAGGAGCCTACATCCGAGGAGACCTAGAGAAGCTCTTGGCCTAGACGAGGAACTAAGAGCTCGTCTCCCAGCATTTGGATTTCCAGTTTCTACAATTCGGTCAGGAAGTGTGATAGTTGGAGAATGGTATTGCCCTTTTATGTTTGTGAAGGAGAATTGTAGTGTAAGTCAACAAATGAGGAAGTCAATGTTCTATAGGATCACACTATCCCAATACTGGGAACGAATTTACCATTGCGGAAACAATGATCTTGATGAAAACAATGATGAAAACGAAGAAGAAGTTGTGAGAGTAGAGGCTAACGTCGTGAGAGAGGCCAACTATGTGAAGGGTATGGAGGCGGTTAAGGGAGAGAAAGAAGGGCATGGAGGGTTTTATTGGTATAGGCAGGTTCAAGGTCCACGGGGACCGGGGGAGAGGAGGAGGAAGACGGGTTTAAGGTCTCCGGTGGGGCTGAGTTTTGTGGTGGTAGAAAGGATGAGAAGGGTAATGGAGGAAGGAGGGTGGGTGGGAGGAGGAAGGAAAGTGGTGAGGGTGGAGAGAGATGAACCAATCAGGGTTTGTAGAAGAGATGGTAGGAATATGAATGGTAACAATGATAGAAATTGGAGGAGATTTGGGTGTTATGTGTTGGTGGAGAGTTTTGGGCTGAGAAGAGCAGATGGAGTTTTGTTGGTTAAATGTGTATTTAGACATACTAATAGATTGAGATGTAACTGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

421

Amino Acids

48.77

Weight (kDa)

9.51

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 124 1.3e-41 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 538
Acc36I ACCTGC 1 cut(s) 919
AccB1I GGYRCC 1 cut(s) 481
AccB7I CCANNNNNTGG 1 cut(s) 614
AciI CCGC 3 cut(s) 497, 777, 881
AclWI GGATC 3 cut(s) 404, 417, 746
AcsI RAATTY 1 cut(s) 765
AcyI GRCGYC 1 cut(s) 482
AfaI GTAC 3 cut(s) 5, 145, 493
AfiI CCNNNNNNNGG 5 cut(s) 80, 586, 614, 756, 757
AgsI TTSAA 1 cut(s) 935
AloI GAACNNNNNNTCC 2 cut(s) 59, 91
AluBI AGCT 5 cut(s) 110, 166, 529, 572, 599
AluI AGCT 5 cut(s) 110, 166, 529, 572, 599
Alw21I GWGCWC 1 cut(s) 601
Alw26I GTCTC 4 cut(s) 221, 553, 608, 987
AlwI GGATC 3 cut(s) 404, 417, 746
Ama87I CYCGRG 1 cut(s) 538
AoxI GGCC 2 cut(s) 577, 855
ApoI RAATTY 1 cut(s) 765
AspLEI GCGC 1 cut(s) 484
AspS9I GGNCC 3 cut(s) 71, 938, 947
AsuC2I CCSGG 1 cut(s) 951
AsuHPI GGTGA 2 cut(s) 54, 1081
AvaI CYCGRG 1 cut(s) 538
AvaII GGWCC 3 cut(s) 71, 938, 947
AxyI CCTNAGG 1 cut(s) 177
BamHI GGATCC 1 cut(s) 409
BanI GGYRCC 1 cut(s) 481
BanII GRGCYC 1 cut(s) 601
BbsI GAAGAC 3 cut(s) 50, 270, 974
Bbv12I GWGCWC 1 cut(s) 601
BccI CCATC 3 cut(s) 516, 1106, 1196
BciVI GTATCC 1 cut(s) 115
BcnI CCSGG 1 cut(s) 951
BcoDI GTCTC 4 cut(s) 221, 553, 608, 987
BfaI CTAG 4 cut(s) 306, 342, 564, 581
BfmI CTRYAG 1 cut(s) 733
BfoI RGCGCY 1 cut(s) 485
BfuAI ACCTGC 1 cut(s) 919
BfuI GTATCC 1 cut(s) 115
BglII AGATCT 1 cut(s) 186
Bme1390I CCNGG 1 cut(s) 951
Bme18I GGWCC 3 cut(s) 71, 938, 947
BmeT110I CYCGRG 1 cut(s) 538
BmgT120I GGNCC 3 cut(s) 71, 938, 947
BmiI GGNNCC 4 cut(s) 411, 483, 545, 948
BmrFI CCNGG 1 cut(s) 951
BmrI ACTGGG 1 cut(s) 766
BmsI GCATC 1 cut(s) 457
BmuI ACTGGG 1 cut(s) 766
BpiI GAAGAC 3 cut(s) 50, 270, 974
BplI GAGNNNNNCTC 2 cut(s) 588, 620
BpuEI CTTGAG 1 cut(s) 494
BpuMI CCSGG 1 cut(s) 951
BsaAI YACGTR 1 cut(s) 7
BsaHI GRCGYC 1 cut(s) 482
BsaI GGTCTC 2 cut(s) 553, 987
BsaJI CCNNGG 3 cut(s) 554, 941, 950
BsaWI WCCGGW 3 cut(s) 64, 456, 985
BsaXI ACNNNNNCTCC 2 cut(s) 1032, 1062
Bsc4I CCNNNNNNNGG 5 cut(s) 80, 586, 614, 756, 757
Bse118I RCCGGY 2 cut(s) 256, 444
Bse1I ACTGG 3 cut(s) 623, 761, 1262
Bse21I CCTNAGG 1 cut(s) 177
Bse3DI GCAATG 1 cut(s) 772
BseDI CCNNGG 3 cut(s) 554, 941, 950
BseGI GGATG 4 cut(s) 144, 527, 550, 1023
BseLI CCNNNNNNNGG 5 cut(s) 80, 586, 614, 756, 757
BseMI GCAATG 1 cut(s) 772
BseMII CTCAG 3 cut(s) 191, 986, 1181
BseNI ACTGG 3 cut(s) 623, 761, 1262
BseRI GAGGAG 6 cut(s) 556, 571, 973, 976, 1068, 1165
BseYI CCCAGC 1 cut(s) 607
Bsh1285I CGRYCG 1 cut(s) 457
BshFI GGCC 2 cut(s) 579, 857
BshNI GGYRCC 1 cut(s) 481
BsiEI CGRYCG 1 cut(s) 457
BsiHKAI GWGCWC 1 cut(s) 601
BsiHKCI CYCGRG 1 cut(s) 538
BsiSI CCGG 7 cut(s) 65, 81, 257, 445, 457, 950, 986
BslFI GGGAC 1 cut(s) 960
BslI CCNNNNNNNGG 5 cut(s) 80, 586, 614, 756, 757
BsmAI GTCTC 4 cut(s) 221, 553, 608, 987
BsmBI CGTCTC 1 cut(s) 608
BsmFI GGGAC 1 cut(s) 960
BsnI GGCC 2 cut(s) 579, 857
Bso31I GGTCTC 2 cut(s) 553, 987
BsoBI CYCGRG 1 cut(s) 538
Bsp1286I GDGCHC 1 cut(s) 601
Bsp143I GATC 6 cut(s) 186, 265, 409, 438, 738, 787
BspACI CCGC 3 cut(s) 497, 777, 881
BspANI GGCC 2 cut(s) 579, 857
BspCNI CTCAG 3 cut(s) 190, 987, 1182
BspLI GGNNCC 4 cut(s) 411, 483, 545, 948
BspMI ACCTGC 1 cut(s) 919
BspPI GGATC 3 cut(s) 404, 417, 746
BspQI GCTCTTC 1 cut(s) 1189
BspT107I GGYRCC 1 cut(s) 481
BspTNI GGTCTC 2 cut(s) 553, 987
BsrDI GCAATG 1 cut(s) 772
BsrFI RCCGGY 2 cut(s) 256, 444
BsrI ACTGG 3 cut(s) 623, 761, 1262
BssAI RCCGGY 2 cut(s) 256, 444
BssECI CCNNGG 3 cut(s) 554, 941, 950
BssMI GATC 6 cut(s) 186, 265, 409, 438, 738, 787
BssNI GRCGYC 1 cut(s) 482
Bst4CI ACNGT 3 cut(s) 212, 433, 491
Bst6I CTCTTC 3 cut(s) 51, 1102, 1189
BstACI GRCGYC 1 cut(s) 482
BstBAI YACGTR 1 cut(s) 7
BstDEI CTNAG 5 cut(s) 177, 205, 593, 995, 1190
BstDSI CCRYGG 1 cut(s) 941
BstENI CCTNNNNNAGG 1 cut(s) 584
BstF5I GGATG 4 cut(s) 144, 527, 550, 1023
BstH2I RGCGCY 1 cut(s) 485
BstHHI GCGC 1 cut(s) 484
BstKTI GATC 6 cut(s) 189, 268, 412, 441, 741, 790
BstMAI GTCTC 4 cut(s) 221, 553, 608, 987
BstMBI GATC 6 cut(s) 186, 265, 409, 438, 738, 787
BstMCI CGRYCG 1 cut(s) 457
BstSCI CCNGG 1 cut(s) 949
BstSFI CTRYAG 1 cut(s) 733
BstV2I GAAGAC 3 cut(s) 50, 270, 974
BstX2I RGATCY 2 cut(s) 186, 409
BstYI RGATCY 2 cut(s) 186, 409
Bsu36I CCTNAGG 1 cut(s) 177
BsuI GTATCC 1 cut(s) 115
BsuRI GGCC 2 cut(s) 579, 857
BtgI CCRYGG 1 cut(s) 941
BtsCI GGATG 4 cut(s) 144, 527, 550, 1023
BveI ACCTGC 1 cut(s) 919
CfoI GCGC 1 cut(s) 484
Cfr10I RCCGGY 2 cut(s) 256, 444
Cfr13I GGNCC 3 cut(s) 71, 938, 947
CseI GACGC 1 cut(s) 55
Csp6I GTAC 3 cut(s) 4, 144, 492
CspCI CAANNNNNGTGG 2 cut(s) 459, 494
CviAII CATG 2 cut(s) 386, 905
CviQI GTAC 3 cut(s) 4, 144, 492
DdeI CTNAG 5 cut(s) 177, 205, 593, 995, 1190
DinI GGCGCC 1 cut(s) 483
DpnI GATC 6 cut(s) 188, 267, 411, 440, 740, 789
DpnII GATC 6 cut(s) 186, 265, 409, 438, 738, 787
Eam1104I CTCTTC 3 cut(s) 51, 1102, 1189
EarI CTCTTC 3 cut(s) 51, 1102, 1189
Ecl136II GAGCTC 1 cut(s) 599
Eco24I GRGCYC 1 cut(s) 601
Eco31I GGTCTC 2 cut(s) 553, 987
Eco32I GATATC 1 cut(s) 379
Eco47I GGWCC 3 cut(s) 71, 938, 947
Eco53kI GAGCTC 1 cut(s) 599
Eco81I CCTNAGG 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 538
EcoICRI GAGCTC 1 cut(s) 599
EcoNI CCTNNNNNAGG 1 cut(s) 584
EcoRV GATATC 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 601
EgeI GGCGCC 1 cut(s) 483
EheI GGCGCC 1 cut(s) 483
Esp3I CGTCTC 1 cut(s) 608
FaeI CATG 2 cut(s) 389, 908
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FaqI GGGAC 1 cut(s) 960
FatI CATG 2 cut(s) 385, 904
FokI GGATG 4 cut(s) 151, 534, 537, 1030
FriOI GRGCYC 1 cut(s) 601
FspBI CTAG 4 cut(s) 306, 342, 564, 581
GlaI GCGC 1 cut(s) 483
GsaI CCCAGC 1 cut(s) 611
HaeII RGCGCY 1 cut(s) 485
HaeIII GGCC 2 cut(s) 579, 857
HapII CCGG 7 cut(s) 65, 81, 257, 445, 457, 950, 986
HgaI GACGC 1 cut(s) 55
HhaI GCGC 1 cut(s) 484
Hin1I GRCGYC 1 cut(s) 482
Hin1II CATG 2 cut(s) 389, 908
Hin6I GCGC 1 cut(s) 482
HinP1I GCGC 1 cut(s) 482
HincII GTYRAC 1 cut(s) 710
HindII GTYRAC 1 cut(s) 710
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 1 cut(s) 59
HpaII CCGG 7 cut(s) 65, 81, 257, 445, 457, 950, 986
HphI GGTGA 2 cut(s) 54, 1081
Hpy166II GTNNAC 6 cut(s) 144, 202, 301, 494, 710, 941
Hpy188I TCNGA 5 cut(s) 32, 42, 55, 429, 555
Hpy8I GTNNAC 6 cut(s) 144, 202, 301, 494, 710, 941
Hpy99I CGWCG 1 cut(s) 848
HpyAV CCTTC 8 cut(s) 62, 235, 682, 862, 893, 1017, 1031, 1053
HpyCH4III ACNGT 3 cut(s) 212, 433, 491
HpyCH4IV ACGT 4 cut(s) 6, 125, 294, 843
HpyCH4V TGCA 2 cut(s) 385, 470
HpyF3I CTNAG 5 cut(s) 177, 205, 593, 995, 1190
HpySE526I ACGT 4 cut(s) 6, 125, 294, 843
Hsp92I GRCGYC 1 cut(s) 482
Hsp92II CATG 2 cut(s) 389, 908
HspAI GCGC 1 cut(s) 482
KasI GGCGCC 1 cut(s) 481
Kzo9I GATC 6 cut(s) 186, 265, 409, 438, 738, 787
LguI GCTCTTC 1 cut(s) 1189
LmnI GCTCC 2 cut(s) 526, 543
LweI GCATC 1 cut(s) 457
MaeI CTAG 4 cut(s) 306, 342, 564, 581
MaeII ACGT 4 cut(s) 6, 125, 294, 843
MaeIII GTNAC 6 cut(s) 7, 60, 171, 218, 1130, 1253
MalI GATC 6 cut(s) 188, 267, 411, 440, 740, 789
MboI GATC 6 cut(s) 186, 265, 409, 438, 738, 787
MflI RGATCY 2 cut(s) 186, 409
MhlI GDGCHC 1 cut(s) 601
MluCI AATT 4 cut(s) 633, 694, 765, 1144
Mly113I GGCGCC 1 cut(s) 482
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 637
MseI TTAA 5 cut(s) 237, 435, 885, 977, 1218
MspI CCGG 7 cut(s) 65, 81, 257, 445, 457, 950, 986
MspR9I CCNGG 1 cut(s) 951
NarI GGCGCC 1 cut(s) 482
NciI CCSGG 1 cut(s) 951
NdeII GATC 6 cut(s) 186, 265, 409, 438, 738, 787
NlaIII CATG 2 cut(s) 389, 908
NlaIV GGNNCC 4 cut(s) 411, 483, 545, 948
NmuCI GTSAC 2 cut(s) 7, 60
PaeR7I CTCGAG 1 cut(s) 538
PciSI GCTCTTC 1 cut(s) 1189
PflMI CCANNNNNTGG 1 cut(s) 614
PleI GAGTC 1 cut(s) 67
PluTI GGCGCC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 67
Ppu21I YACGTR 1 cut(s) 7
Psp124BI GAGCTC 1 cut(s) 601
PspFI CCCAGC 1 cut(s) 607
PspN4I GGNNCC 4 cut(s) 411, 483, 545, 948
PspPI GGNCC 3 cut(s) 71, 938, 947
PspXI VCTCGAGB 1 cut(s) 538
PsuI RGATCY 2 cut(s) 186, 409
RsaI GTAC 3 cut(s) 5, 145, 493
RsaNI GTAC 3 cut(s) 4, 144, 492
SacI GAGCTC 1 cut(s) 601
SapI GCTCTTC 1 cut(s) 1189
SaqAI TTAA 5 cut(s) 237, 435, 885, 977, 1218
Sau3AI GATC 6 cut(s) 186, 265, 409, 438, 738, 787
Sau96I GGNCC 3 cut(s) 71, 938, 947
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 951
SduI GDGCHC 1 cut(s) 601
SfaNI GCATC 1 cut(s) 457
SfcI CTRYAG 1 cut(s) 733
SfoI GGCGCC 1 cut(s) 483
Sfr274I CTCGAG 1 cut(s) 538
SinI GGWCC 3 cut(s) 71, 938, 947
SlaI CTCGAG 1 cut(s) 538
SmlI CTYRAG 2 cut(s) 509, 538
SmoI CTYRAG 2 cut(s) 509, 538
Sse9I AATT 4 cut(s) 633, 694, 765, 1144
SsiI CCGC 3 cut(s) 497, 777, 881
SspDI GGCGCC 1 cut(s) 481
SspMI CTAG 4 cut(s) 306, 342, 564, 581
SstI GAGCTC 1 cut(s) 601
StyD4I CCNGG 1 cut(s) 949
TaaI ACNGT 3 cut(s) 212, 433, 491
TaiI ACGT 4 cut(s) 9, 128, 297, 846
TaqI TCGA 2 cut(s) 264, 539
TaqII GACCGA 1 cut(s) 627
TasI AATT 4 cut(s) 633, 694, 765, 1144
Tru1I TTAA 5 cut(s) 237, 435, 885, 977, 1218
Tru9I TTAA 5 cut(s) 237, 435, 885, 977, 1218
TseFI GTSAC 2 cut(s) 7, 60
Tsp45I GTSAC 2 cut(s) 7, 60
TspDTI ATGAA 6 cut(s) 117, 241, 810, 822, 1101, 1139
TspGWI ACGGA 3 cut(s) 63, 159, 322
Van91I CCANNNNNTGG 1 cut(s) 614
VpaK11BI GGWCC 3 cut(s) 71, 938, 947
XagI CCTNNNNNAGG 1 cut(s) 584
XapI RAATTY 1 cut(s) 765
XbaI TCTAGA 1 cut(s) 341
XhoI CTCGAG 1 cut(s) 538
XspI CTAG 4 cut(s) 306, 342, 564, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.