Rroxscaffold_2G00086960

Protein of unknown function (DUF1262)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001480
Physical Location & Seq
Forward (+)
9085185 .. 9088837
3653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00086960.1

Sequence Viewer

Length: 1251 bp
ATGAGACAATTCAACTACTTCGCAGAAAGATTGAAAAATTTCCTCGAGACCACACCAGCACCAAAAACAGACAGAACTAGAAAGATGTATGTGACAAAACCGCTTTCCATGTACCGGAAATCTCCAAACACCCTTTCCATACAGCCACCAGATGCTCCTTATTCCGGTCATTTAGTAGTTACAGATGAAGAAGCAGAAGCCCAAGACTCATGTTGTTGGGGTATCTGCAAGCGTGACCAGATTAAGCAACTACCATTTCCACAGGACAAGATACTCACCGTTGTTTATACATCGGATTACCAAGAAGCATATACCACCAAAGTTTGGTTCATCCCGGTTCTTGATCAGCCTCTGTCTTCTAATTGCTACTACGTTATCAAAGCAAATGGAAGACACAAAGGGAAAGCATGCAGATGTTCTAAAGAGAGGGACATAATGAATTGTTGCTTCAGAGACTTCGTGAGGGACAAGAAACCAACACTTTTGAATCTCAGAAACATATACCAACAGGTTAAGATTCATCGGCACCAAGGAGGTGGTTTTTTCGCGGAGTCTGTAGCTCCTGATGGTGTTCCTCCTAAATTTCTAAGAAGGAAAGGATGGGAAATCCGCAGCTCAAGTTTGTACCGATGGCAATTAAGTGATGCCTTAGGCCTCGATGCTTCCATCCGATCACGTTTCCCTGACTTCAACTTTCCCATCTTTAAGAAACGTTCAGCTTCTAATGTTGTGGGCAAATGGTACAGTCCGTTTATGTTTGTGAGAGAGAAAGCAACCATGAGACGCCAGATGAAGAAGACGAAATTTTACAGAATAACTCTCGAGCAGTGGTGGGAAGAGATTTACGCCTGTGGGAATACTAGCAACGAAGGCAATGTTGTGAATGTGGATGTAAGCGTGCAAAGGGAAGTGGCTTTCGTATCTGCCGTGGAAGCTGTCAAGGACGATAGAAATGGTCGTACTGGGTTCTCTTGGTTCAAGGCTTATAATCCAGATAGCCAAAAACTGGTCACCGTAGGTCTGAGTCCACCAATTGTCCAGAATATGAAATGGGTTTTAGAGGCAGGAGGGTGGGTTACTGGGGACGAAAGGGACGCAAGGGTGCAGAAAGTACAAGAGATTACAAGCAGGTGGAGGAAGTTTGGCTGTTATGTTCTGGTGGAGAGTTTCTACTTAAGAAGAATGGATGGAAGCTTGGTATTGAGACGTGATTTTAGGCACACTAATACCATTCGATGCAAGTGGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

416

Amino Acids

48.66

Weight (kDa)

9.64

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 52 - 150 1.3e-42 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 987
AarI CACCTGC 1 cut(s) 1119
Acc36I ACCTGC 1 cut(s) 1119
AccB1I GGYRCC 1 cut(s) 525
AccB7I CCANNNNNTGG 2 cut(s) 324, 1006
AccII CGCG 1 cut(s) 548
AciI CCGC 3 cut(s) 101, 548, 610
AclI AACGTT 1 cut(s) 712
AcsI RAATTY 3 cut(s) 37, 581, 803
AcuI CTGAAG 1 cut(s) 433
AcyI GRCGYC 1 cut(s) 784
AfaI GTAC 5 cut(s) 113, 626, 743, 961, 1113
AfiI CCNNNNNNNGG 4 cut(s) 114, 164, 324, 1006
AflII CTTAAG 1 cut(s) 1174
AgsI TTSAA 5 cut(s) 13, 34, 487, 691, 979
AjiI CACGTC 1 cut(s) 1208
AjuI GAANNNNNNNTTGG 4 cut(s) 118, 150, 311, 343
AluBI AGCT 5 cut(s) 560, 615, 719, 935, 1194
AluI AGCT 5 cut(s) 560, 615, 719, 935, 1194
Alw26I GTCTC 4 cut(s) 41, 447, 775, 1198
AlwNI CAGNNNCTG 1 cut(s) 352
Ama87I CYCGRG 2 cut(s) 44, 821
AoxI GGCC 1 cut(s) 652
ApeKI GCWGC 1 cut(s) 612
ApoI RAATTY 3 cut(s) 37, 581, 803
Asp700I GAANNNNTTC 1 cut(s) 38
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 2 cut(s) 268, 1003
AvaI CYCGRG 2 cut(s) 44, 821
AxyI CCTNAGG 1 cut(s) 649
BanI GGYRCC 1 cut(s) 525
BbsI GAAGAC 3 cut(s) 348, 397, 803
BbvI GCAGC 1 cut(s) 624
BccI CCATC 6 cut(s) 560, 594, 624, 674, 707, 1181
BceAI ACGGC 1 cut(s) 911
BclI TGATCA 1 cut(s) 343
BcnI CCSGG 1 cut(s) 335
BcoDI GTCTC 4 cut(s) 41, 447, 775, 1198
BfaI CTAG 2 cut(s) 78, 861
BfmI CTRYAG 1 cut(s) 555
BfrI CTTAAG 1 cut(s) 1174
BfuAI ACCTGC 1 cut(s) 1119
BisI GCNGC 1 cut(s) 613
BlsI GCNGC 1 cut(s) 614
Bme1390I CCNGG 1 cut(s) 335
BmeT110I CYCGRG 2 cut(s) 44, 821
BmgBI CACGTC 1 cut(s) 1208
BmiI GGNNCC 1 cut(s) 527
BmrFI CCNGG 1 cut(s) 335
BmrI ACTGGG 2 cut(s) 972, 1089
BmsI GCATC 4 cut(s) 142, 634, 649, 1226
BmuI ACTGGG 2 cut(s) 972, 1089
BpiI GAAGAC 3 cut(s) 348, 397, 803
BpuEI CTTGAG 1 cut(s) 601
BpuMI CCSGG 1 cut(s) 335
BsaHI GRCGYC 1 cut(s) 784
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 2 cut(s) 529, 927
BsaWI WCCGGW 2 cut(s) 114, 164
BsaXI ACNNNNNCTCC 2 cut(s) 1059, 1089
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 164, 324, 1006
Bse1I ACTGG 3 cut(s) 967, 1011, 1084
Bse21I CCTNAGG 1 cut(s) 649
Bse3DI GCAATG 1 cut(s) 880
BseDI CCNNGG 2 cut(s) 529, 927
BseGI GGATG 5 cut(s) 330, 605, 666, 895, 1192
BseLI CCNNNNNNNGG 4 cut(s) 114, 164, 324, 1006
BseMI GCAATG 1 cut(s) 880
BseMII CTCAG 2 cut(s) 505, 1013
BseNI ACTGG 3 cut(s) 967, 1011, 1084
BseXI GCAGC 1 cut(s) 624
BsgI GTGCAG 1 cut(s) 1124
Bsh1236I CGCG 1 cut(s) 548
BshFI GGCC 1 cut(s) 654
BshNI GGYRCC 1 cut(s) 525
BsiHKCI CYCGRG 2 cut(s) 44, 821
BsiSI CCGG 3 cut(s) 115, 165, 335
BslFI GGGAC 4 cut(s) 443, 479, 1097, 1106
BslI CCNNNNNNNGG 4 cut(s) 114, 164, 324, 1006
BsmAI GTCTC 4 cut(s) 41, 447, 775, 1198
BsmBI CGTCTC 2 cut(s) 775, 1198
BsmFI GGGAC 4 cut(s) 443, 479, 1097, 1106
BsnI GGCC 1 cut(s) 654
Bso31I GGTCTC 1 cut(s) 41
BsoBI CYCGRG 2 cut(s) 44, 821
Bsp143I GATC 2 cut(s) 343, 671
BspACI CCGC 3 cut(s) 101, 548, 610
BspANI GGCC 1 cut(s) 654
BspCNI CTCAG 2 cut(s) 504, 1014
BspFNI CGCG 1 cut(s) 548
BspLI GGNNCC 1 cut(s) 527
BspMI ACCTGC 1 cut(s) 1119
BspT107I GGYRCC 1 cut(s) 525
BspTI CTTAAG 1 cut(s) 1174
BspTNI GGTCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 880
BsrI ACTGG 3 cut(s) 967, 1011, 1084
BssECI CCNNGG 2 cut(s) 529, 927
BssMI GATC 2 cut(s) 343, 671
BssNI GRCGYC 1 cut(s) 784
BssT1I CCWWGG 1 cut(s) 529
Bst4CI ACNGT 3 cut(s) 280, 746, 1015
Bst6I CTCTTC 1 cut(s) 831
BstACI GRCGYC 1 cut(s) 784
BstAFI CTTAAG 1 cut(s) 1174
BstC8I GCNNGC 3 cut(s) 230, 409, 899
BstDEI CTNAG 4 cut(s) 491, 587, 649, 1022
BstDSI CCRYGG 1 cut(s) 927
BstEII GGTNACC 1 cut(s) 1009
BstF5I GGATG 5 cut(s) 330, 605, 666, 895, 1192
BstFNI CGCG 1 cut(s) 548
BstKTI GATC 2 cut(s) 346, 674
BstMAI GTCTC 4 cut(s) 41, 447, 775, 1198
BstMBI GATC 2 cut(s) 343, 671
BstMWI GCNNNNNNNGC 2 cut(s) 870, 932
BstNSI RCATGY 1 cut(s) 411
BstPI GGTNACC 1 cut(s) 1009
BstSCI CCNGG 1 cut(s) 333
BstSFI CTRYAG 1 cut(s) 555
BstUI CGCG 1 cut(s) 548
BstV1I GCAGC 1 cut(s) 624
BstV2I GAAGAC 3 cut(s) 348, 397, 803
BstXI CCANNNNNNTGG 1 cut(s) 536
Bsu36I CCTNAGG 1 cut(s) 649
BsuRI GGCC 1 cut(s) 654
BtgI CCRYGG 1 cut(s) 927
BtrI CACGTC 1 cut(s) 1208
BtsCI GGATG 5 cut(s) 330, 605, 666, 895, 1192
BtsI GCAGTG 1 cut(s) 833
BtsIMutI CAGTG 1 cut(s) 833
BveI ACCTGC 1 cut(s) 1119
Cac8I GCNNGC 3 cut(s) 230, 409, 899
CaiI CAGNNNCTG 1 cut(s) 352
CseI GACGC 2 cut(s) 792, 1103
Csp6I GTAC 5 cut(s) 112, 625, 742, 960, 1112
CviAII CATG 4 cut(s) 109, 210, 408, 778
CviQI GTAC 5 cut(s) 112, 625, 742, 960, 1112
DdeI CTNAG 4 cut(s) 491, 587, 649, 1022
DpnI GATC 2 cut(s) 345, 673
DpnII GATC 2 cut(s) 343, 671
Eam1104I CTCTTC 1 cut(s) 831
EarI CTCTTC 1 cut(s) 831
Eco130I CCWWGG 1 cut(s) 529
Eco147I AGGCCT 1 cut(s) 654
Eco31I GGTCTC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 433
Eco81I CCTNAGG 1 cut(s) 649
Eco88I CYCGRG 2 cut(s) 44, 821
Eco91I GGTNACC 1 cut(s) 1009
EcoO65I GGTNACC 1 cut(s) 1009
EcoT14I CCWWGG 1 cut(s) 529
ErhI CCWWGG 1 cut(s) 529
Esp3I CGTCTC 2 cut(s) 775, 1198
FaeI CATG 4 cut(s) 112, 213, 411, 781
FaqI GGGAC 4 cut(s) 443, 479, 1097, 1106
FatI CATG 4 cut(s) 108, 209, 407, 777
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 1 cut(s) 613
FokI GGATG 5 cut(s) 317, 612, 653, 902, 1199
Fsp4HI GCNGC 1 cut(s) 613
FspBI CTAG 2 cut(s) 78, 861
GluI GCNGC 1 cut(s) 613
HaeIII GGCC 1 cut(s) 654
HapII CCGG 3 cut(s) 115, 165, 335
HgaI GACGC 2 cut(s) 792, 1103
Hin1I GRCGYC 1 cut(s) 784
Hin1II CATG 4 cut(s) 112, 213, 411, 781
HindIII AAGCTT 1 cut(s) 1192
HinfI GANTC 5 cut(s) 206, 487, 517, 551, 1024
HpaII CCGG 3 cut(s) 115, 165, 335
HphI GGTGA 2 cut(s) 268, 1003
Hpy166II GTNNAC 1 cut(s) 1028
Hpy188I TCNGA 5 cut(s) 295, 452, 494, 671, 1023
Hpy188III TCNNGA 7 cut(s) 46, 341, 460, 563, 821, 992, 1039
Hpy8I GTNNAC 1 cut(s) 1028
HpyAV CCTTC 2 cut(s) 585, 863
HpyCH4III ACNGT 3 cut(s) 280, 746, 1015
HpyCH4IV ACGT 4 cut(s) 372, 676, 712, 1207
HpyCH4V TGCA 5 cut(s) 228, 411, 901, 1105, 1239
HpyF10VI GCNNNNNNNGC 2 cut(s) 870, 932
HpyF3I CTNAG 4 cut(s) 491, 587, 649, 1022
HpySE526I ACGT 4 cut(s) 372, 676, 712, 1207
Hsp92I GRCGYC 1 cut(s) 784
Hsp92II CATG 4 cut(s) 112, 213, 411, 781
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 2 cut(s) 343, 671
LmnI GCTCC 2 cut(s) 160, 565
Lsp1109I GCAGC 1 cut(s) 624
LweI GCATC 4 cut(s) 142, 634, 649, 1226
MaeI CTAG 2 cut(s) 78, 861
MaeII ACGT 4 cut(s) 372, 676, 712, 1207
MaeIII GTNAC 5 cut(s) 91, 178, 233, 1009, 1075
MalI GATC 2 cut(s) 345, 673
MboI GATC 2 cut(s) 343, 671
MboII GAAGA 7 cut(s) 200, 348, 402, 805, 808, 848, 1191
MfeI CAATTG 1 cut(s) 1032
MluCI AATT 8 cut(s) 8, 37, 361, 439, 581, 635, 803, 1032
MlyI GAGTC 3 cut(s) 200, 560, 1033
MroXI GAANNNNTTC 1 cut(s) 38
MseI TTAA 5 cut(s) 243, 513, 638, 705, 1175
MslI CAYNNNNRTG 1 cut(s) 412
MspCI CTTAAG 1 cut(s) 1174
MspI CCGG 3 cut(s) 115, 165, 335
MspR9I CCNGG 1 cut(s) 335
MunI CAATTG 1 cut(s) 1032
MvnI CGCG 1 cut(s) 548
MwoI GCNNNNNNNGC 2 cut(s) 870, 932
NciI CCSGG 1 cut(s) 335
NdeII GATC 2 cut(s) 343, 671
NlaIII CATG 4 cut(s) 112, 213, 411, 781
NlaIV GGNNCC 1 cut(s) 527
NmuCI GTSAC 3 cut(s) 91, 233, 1009
NspI RCATGY 1 cut(s) 411
PaeI GCATGC 1 cut(s) 411
PaeR7I CTCGAG 2 cut(s) 44, 821
PaqCI CACCTGC 1 cut(s) 1119
PceI AGGCCT 1 cut(s) 654
PcsI WCGNNNNNNNCGW 1 cut(s) 924
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 2 cut(s) 487, 517
PflMI CCANNNNNTGG 2 cut(s) 324, 1006
PkrI GCNGC 1 cut(s) 614
PleI GAGTC 3 cut(s) 200, 559, 1032
PpsI GAGTC 3 cut(s) 200, 559, 1032
PsiI TTATAA 1 cut(s) 987
Psp1406I AACGTT 1 cut(s) 712
PspEI GGTNACC 1 cut(s) 1009
PspN4I GGNNCC 1 cut(s) 527
PstNI CAGNNNCTG 1 cut(s) 352
RsaI GTAC 5 cut(s) 113, 626, 743, 961, 1113
RsaNI GTAC 5 cut(s) 112, 625, 742, 960, 1112
RseI CAYNNNNRTG 1 cut(s) 412
SaqAI TTAA 5 cut(s) 243, 513, 638, 705, 1175
SatI GCNGC 1 cut(s) 613
Sau3AI GATC 2 cut(s) 343, 671
SchI GAGTC 3 cut(s) 200, 560, 1033
ScrFI CCNGG 1 cut(s) 335
SfaNI GCATC 4 cut(s) 142, 634, 649, 1226
SfcI CTRYAG 1 cut(s) 555
Sfr274I CTCGAG 2 cut(s) 44, 821
SlaI CTCGAG 2 cut(s) 44, 821
SmiMI CAYNNNNRTG 1 cut(s) 412
SmlI CTYRAG 4 cut(s) 44, 616, 821, 1174
SmoI CTYRAG 4 cut(s) 44, 616, 821, 1174
SphI GCATGC 1 cut(s) 411
Sse9I AATT 8 cut(s) 8, 37, 361, 439, 581, 635, 803, 1032
SseBI AGGCCT 1 cut(s) 654
SsiI CCGC 3 cut(s) 101, 548, 610
SspMI CTAG 2 cut(s) 78, 861
StuI AGGCCT 1 cut(s) 654
StyD4I CCNGG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 529
TaaI ACNGT 3 cut(s) 280, 746, 1015
TaiI ACGT 4 cut(s) 375, 679, 715, 1210
TaqI TCGA 4 cut(s) 45, 657, 822, 1234
TasI AATT 8 cut(s) 8, 37, 361, 439, 581, 635, 803, 1032
TatI WGTACW 1 cut(s) 1111
TfiI GAWTC 2 cut(s) 487, 517
Tru1I TTAA 5 cut(s) 243, 513, 638, 705, 1175
Tru9I TTAA 5 cut(s) 243, 513, 638, 705, 1175
TscAI CASTG 1 cut(s) 833
TseFI GTSAC 3 cut(s) 91, 233, 1009
TseI GCWGC 1 cut(s) 612
Tsp45I GTSAC 3 cut(s) 91, 233, 1009
TspDTI ATGAA 6 cut(s) 201, 319, 452, 509, 806, 1061
TspGWI ACGGA 1 cut(s) 738
TspRI CASTG 1 cut(s) 833
Van91I CCANNNNNTGG 2 cut(s) 324, 1006
Vha464I CTTAAG 1 cut(s) 1174
XapI RAATTY 3 cut(s) 37, 581, 803
XceI RCATGY 1 cut(s) 411
XhoI CTCGAG 2 cut(s) 44, 821
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 2 cut(s) 78, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.