Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001480

Physical Location & Seq

Genomic Coordinates Reverse (-)

29146951 .. 29147997

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28541.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTATGTGACAAGGCCTCTGTCTATGTATAAAAGGTCTCCTGAATCACTGTCAGGGCCAACCCCGGAAGGGCCAAATTCCGGTTATCTTGTACTCCATGATGCAGAATCAGATGAGACTACATGTTTCGGGTGTTGCGATGAAACTCATGTGAAAGATTTGCCTTTCCCTCAGAACAAGGATCTCTCAGTTGGATATTCCTCAGATAGTGATGAGGTTGCCTTCATTCCAGTTCTTGATAAGCCGTTATCTGCCAATGCATACCATGTGGCTGTTGCTTCAGATGGCGTTGCTCCTTATTTTTTGAGGAAAAAAGGTTGGCCAGTTACCATGGCCAGACCCCGATATTACCAACTAGGTGAAGCTCCAGGACTCAACTCTTCGAAGCGATCAGACCTTCCTGGTTTCGATTTTCCATTGTCCAAAGATTGTTCTGAAGCTATGGTAGTTGGAAAGTGGCACTGTCCTTTCTTGTTCATCAAGGAAGGGGGACTGAAGTTGAAGCACCAAGTAAAGCAATGCATGTTCTATGAAATGAGACTCGAGCAAAGATGGGAGAAAATTTTCGACAAGTCCAATGAAGGAAAGAGCAACAATGCTAATGTTGTGTTTGTGGATGCATTTGTCCAAAGAGAGGCAGTTTTTGTTGCAGGAAATGAAGTTTCTTCTGATAACCATGCAAAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1262

Protein Analysis

230

Amino Acids

25.66

Weight (kDa)

6.08

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1262	PF06880	23 - 93	1.2e-23	Protein of unknown function (DUF1262)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61600
fragaria_vesca	FvH4_4g28540 FvH4_4g28541 FvH4_4g28542 FvH4_4g28543 FvH4_4g28551 FvH4_6g45700
malus_domestica	MD09G1080800.v1.1 MD13G1051500.v1.1 MD13G1051600.v1.1 MD13G1051800.v1.1 MD16G1057900.v1.1
prunus_persica	Prupe.1G300200_v2.0.a1 Prupe.1G300300_v2.0.a1 Prupe.1G300400_v2.0.a1 Prupe.3G243200_v2.0.a1
pyrus_communis	pycom09g00720 pycom13g04570 pycom13g04590 pycom13g04600 pycom13g04610 pycom16g05070
rosa_chinensis	RchiOBHm_Chr2g0163851 RchiOBHm_Chr4g0436581 RchiOBHm_Chr4g0436641
rosa_laevigata	RLG00000006506 RLG00000006509
rosa_multiflora	Rmu_sc0003130.1_g000009 Rmu_sc0003130.1_g000016
rosa_roxburghii	Rroxscaffold_1G00028970 Rroxscaffold_2G00086960 Rroxscaffold_5G00377710
rosa_rugosa	Rorug02G0505000 Rorug04G0294800
rosa_samantha	Rh2AG573000 Rh2BG583700 Rh2CG554600 Rh2CG554700 Rh2DG593200 Rh4AG349300 Rh4BG357700 Rh4BG358000 Rh4CG372100 Rh4CG372200 Rh4CG372400 Rh4DG351700 Rh4DG351900 Rh4DG352200 Rh5AG340700
rosa_wichuraiana	Rw2G047380 Rw4G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	189
AcoI	YGGCCR	2 cut(s)	320, 333
AcsI	RAATTY	2 cut(s)	76, 561
AcuI	CTGAAG	3 cut(s)	264, 456, 515
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	3 cut(s)	69, 80, 634
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	502
AjnI	CCWGG	2 cut(s)	367, 400
AluBI	AGCT	2 cut(s)	365, 440
AluI	AGCT	2 cut(s)	365, 440
Alw26I	GTCTC	3 cut(s)	42, 110, 532
AlwI	GGATC	1 cut(s)	189
Ama87I	CYCGRG	1 cut(s)	542
AoxI	GGCC	5 cut(s)	14, 56, 71, 320, 333
ApoI	RAATTY	2 cut(s)	76, 561
Asp700I	GAANNNNTTC	1 cut(s)	563
AspS9I	GGNCC	2 cut(s)	56, 71
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	371
AsuII	TTCGAA	1 cut(s)	383
AvaI	CYCGRG	1 cut(s)	542
BalI	TGGCCA	2 cut(s)	322, 335
BccI	CCATC	2 cut(s)	278, 546
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	2 cut(s)	369, 402
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	3 cut(s)	42, 110, 532
BfaI	CTAG	1 cut(s)	356
Bme1390I	CCNGG	3 cut(s)	65, 369, 402
BmeT110I	CYCGRG	1 cut(s)	542
BmgT120I	GGNCC	2 cut(s)	56, 71
BmrFI	CCNGG	3 cut(s)	65, 369, 402
BmsI	GCATC	2 cut(s)	91, 607
BpmI	CTGGAG	1 cut(s)	351
Bpu14I	TTCGAA	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	63, 330
BsaWI	WCCGGW	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 80, 634
Bse1I	ACTGG	2 cut(s)	230, 323
Bse3DI	GCAATG	1 cut(s)	524
BseBI	CCWGG	2 cut(s)	369, 402
BseDI	CCNNGG	2 cut(s)	63, 330
BseGI	GGATG	1 cut(s)	622
BseLI	CCNNNNNNNGG	3 cut(s)	69, 80, 634
BseMI	GCAATG	1 cut(s)	524
BseMII	CTCAG	3 cut(s)	185, 201, 216
BseNI	ACTGG	2 cut(s)	230, 323
BshFI	GGCC	5 cut(s)	16, 58, 73, 322, 335
BsiHKCI	CYCGRG	1 cut(s)	542
BsiSI	CCGG	2 cut(s)	65, 81
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	3 cut(s)	69, 80, 634
BsmAI	GTCTC	3 cut(s)	42, 110, 532
BsmFI	GGGAC	1 cut(s)	504
BsnI	GGCC	5 cut(s)	16, 58, 73, 322, 335
Bso31I	GGTCTC	1 cut(s)	42
BsoBI	CYCGRG	1 cut(s)	542
Bsp119I	TTCGAA	1 cut(s)	383
Bsp143I	GATC	2 cut(s)	181, 389
Bsp19I	CCATGG	1 cut(s)	330
BspANI	GGCC	5 cut(s)	16, 58, 73, 322, 335
BspCNI	CTCAG	3 cut(s)	184, 200, 215
BspPI	GGATC	1 cut(s)	189
BspT104I	TTCGAA	1 cut(s)	383
BspTNI	GGTCTC	1 cut(s)	42
BsrDI	GCAATG	1 cut(s)	524
BsrI	ACTGG	2 cut(s)	230, 323
BssECI	CCNNGG	2 cut(s)	63, 330
BssMI	GATC	2 cut(s)	181, 389
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	2 cut(s)	369, 402
Bst4CI	ACNGT	2 cut(s)	51, 464
Bst6I	CTCTTC	1 cut(s)	385
BstBI	TTCGAA	1 cut(s)	383
BstDEI	CTNAG	3 cut(s)	171, 187, 202
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	622
BstKTI	GATC	2 cut(s)	184, 392
BstMAI	GTCTC	3 cut(s)	42, 110, 532
BstMBI	GATC	2 cut(s)	181, 389
BstNI	CCWGG	2 cut(s)	369, 402
BstNSI	RCATGY	2 cut(s)	126, 526
BstSCI	CCNGG	3 cut(s)	63, 367, 400
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	5 cut(s)	16, 58, 73, 322, 335
BtgI	CCRYGG	1 cut(s)	330
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	622
BtsIMutI	CAGTG	2 cut(s)	47, 460
Cfr13I	GGNCC	2 cut(s)	56, 71
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	7 cut(s)	98, 123, 149, 266, 331, 523, 677
CviJI	RGCY	9 cut(s)	16, 58, 73, 244, 272, 322, 335, 365, 440
CviKI_1	RGCY	9 cut(s)	16, 58, 73, 244, 272, 322, 335, 365, 440
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	3 cut(s)	171, 187, 202
DpnI	GATC	2 cut(s)	183, 391
DpnII	GATC	2 cut(s)	181, 389
EaeI	YGGCCR	2 cut(s)	320, 333
Eam1104I	CTCTTC	1 cut(s)	385
EarI	CTCTTC	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	330
Eco147I	AGGCCT	1 cut(s)	16
Eco31I	GGTCTC	1 cut(s)	42
Eco57I	CTGAAG	3 cut(s)	264, 456, 515
Eco88I	CYCGRG	1 cut(s)	542
EcoRII	CCWGG	2 cut(s)	367, 400
EcoT14I	CCWWGG	1 cut(s)	330
EcoT22I	ATGCAT	3 cut(s)	262, 524, 622
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	7 cut(s)	101, 126, 152, 269, 334, 526, 680
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	7 cut(s)	97, 122, 148, 265, 330, 522, 676
FokI	GGATG	1 cut(s)	629
FspBI	CTAG	1 cut(s)	356
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	5 cut(s)	16, 58, 73, 322, 335
HapII	CCGG	2 cut(s)	65, 81
Hin1II	CATG	7 cut(s)	101, 126, 152, 269, 334, 526, 680
HinfI	GANTC	4 cut(s)	44, 107, 372, 540
HpaII	CCGG	2 cut(s)	65, 81
HphI	GGTGA	1 cut(s)	371
Hpy188I	TCNGA	7 cut(s)	112, 174, 205, 283, 394, 436, 670
Hpy188III	TCNNGA	2 cut(s)	41, 236
HpyAV	CCTTC	5 cut(s)	62, 232, 407, 479, 575
HpyCH4III	ACNGT	2 cut(s)	51, 464
HpyCH4V	TGCA	6 cut(s)	104, 260, 522, 620, 650, 680
HpyF3I	CTNAG	3 cut(s)	171, 187, 202
Hsp92II	CATG	7 cut(s)	101, 126, 152, 269, 334, 526, 680
Kzo9I	GATC	2 cut(s)	181, 389
LmnI	GCTCC	2 cut(s)	298, 370
LweI	GCATC	2 cut(s)	91, 607
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	2 cut(s)	7, 325
MalI	GATC	2 cut(s)	183, 391
MboI	GATC	2 cut(s)	181, 389
MboII	GAAGA	2 cut(s)	372, 657
MflI	RGATCY	1 cut(s)	181
MlsI	TGGCCA	2 cut(s)	322, 335
MluCI	AATT	2 cut(s)	76, 561
MluNI	TGGCCA	2 cut(s)	322, 335
MlyI	GAGTC	2 cut(s)	366, 534
MmeI	TCCRAC	2 cut(s)	172, 430
MnlI	CCTC	7 cut(s)	27, 180, 208, 211, 300, 628, 678
Mox20I	TGGCCA	2 cut(s)	322, 335
Mph1103I	ATGCAT	3 cut(s)	262, 524, 622
MroXI	GAANNNNTTC	1 cut(s)	563
MscI	TGGCCA	2 cut(s)	322, 335
Msp20I	TGGCCA	2 cut(s)	322, 335
MspI	CCGG	2 cut(s)	65, 81
MspR9I	CCNGG	3 cut(s)	65, 369, 402
MvaI	CCWGG	2 cut(s)	369, 402
NciI	CCSGG	1 cut(s)	65
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	2 cut(s)	181, 389
NlaIII	CATG	7 cut(s)	101, 126, 152, 269, 334, 526, 680
NmuCI	GTSAC	1 cut(s)	7
NsiI	ATGCAT	3 cut(s)	262, 524, 622
NspI	RCATGY	2 cut(s)	126, 526
NspV	TTCGAA	1 cut(s)	383
PaeR7I	CTCGAG	1 cut(s)	542
PceI	AGGCCT	1 cut(s)	16
PciI	ACATGT	1 cut(s)	122
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	563
PfeI	GAWTC	2 cut(s)	44, 107
PfoI	TCCNGGA	1 cut(s)	367
PleI	GAGTC	2 cut(s)	366, 534
PpsI	GAGTC	2 cut(s)	366, 534
PscI	ACATGT	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	367, 400
PspGI	CCWGG	2 cut(s)	367, 400
PspPI	GGNCC	2 cut(s)	56, 71
PspXI	VCTCGAGB	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	181
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
Sau3AI	GATC	2 cut(s)	181, 389
Sau96I	GGNCC	2 cut(s)	56, 71
SchI	GAGTC	2 cut(s)	366, 534
ScrFI	CCNGG	3 cut(s)	65, 369, 402
SetI	ASST	8 cut(s)	38, 219, 319, 361, 367, 399, 442, 689
SfaNI	GCATC	2 cut(s)	91, 607
Sfr274I	CTCGAG	1 cut(s)	542
SfuI	TTCGAA	1 cut(s)	383
SlaI	CTCGAG	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse9I	AATT	2 cut(s)	76, 561
SseBI	AGGCCT	1 cut(s)	16
SspMI	CTAG	1 cut(s)	356
StuI	AGGCCT	1 cut(s)	16
StyD4I	CCNGG	3 cut(s)	63, 367, 400
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	2 cut(s)	51, 464
TaqI	TCGA	4 cut(s)	383, 408, 543, 567
TasI	AATT	2 cut(s)	76, 561
TatI	WGTACW	1 cut(s)	91
TfiI	GAWTC	2 cut(s)	44, 107
TscAI	CASTG	2 cut(s)	54, 467
TseFI	GTSAC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	6 cut(s)	156, 214, 466, 546, 594, 672
TspRI	CASTG	2 cut(s)	54, 467
XapI	RAATTY	2 cut(s)	76, 561
XceI	RCATGY	2 cut(s)	126, 526
XhoI	CTCGAG	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	563
XspI	CTAG	1 cut(s)	356
Zsp2I	ATGCAT	3 cut(s)	262, 524, 622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.