Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003130.1

Orthogroup ID

OG0001480

Physical Location & Seq

Genomic Coordinates Reverse (-)

42639 .. 44099

Gene Structure 1461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003130.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ctgtcagcgccaaccccggaagggccaaattccggttatcttgtgctccatgctgaagaatcggatgagagtcatgagaatggatgttgcgaagatactgacgtgaaagacttgcctttccctcagaacaaggatctctcagttggatattcgtcagataatgatgatgttgccttcattcccgttcttgataagcctttatctgccaatacataccatgtggttggccggtcaccatggccacaccccattaccaacgtactaggtgcagctccaggactcaacgcttggaagcgatcgggccttcctggtttcgactttccattgtccaaagattattctgaggctgtgatagttggcaagtggcactgtcctttcttgtatatcaaggaagggggattgaagttaaagcagcaaatgaagcaatgcatgttctatgaaatgagactggagcaaagatgggagagaatttttgacaagtacaatgaaggtaagagcaataatgctaatgctgtgtttgtggatgcttttgtccaaagagaggtagtttttgttgctggaagtgaagctatttgggataatcatgagagagttgataacgttggtgacggtttcatgtggtttaagagctctgatggtgtgggaggagaaaggagtgtaggattgagcatgaaaattgttgagagaatgaaatgggagcaagaaagagttggatcgcttgctggggatgaaagaaaagtaagagtggagagagtagaagagtttggaggcatagggatattgaagaggtgtagagaagcaatttcgatcagcaaaagtgacagaggaaaggttatcattatagacatcgttgtaaccgtagataacaagaagatgaataacaggtcaactgaaacacaactgttatgggacatgttgttgatggtgaatctcactggaaaagaacgtactgaaagaatgggagaagctgtttttggctgcaggattcagttactataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1262

Protein Analysis

332

Amino Acids

37.42

Weight (kDa)

5.45

Isoelectric Point (pI)

32.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61600
fragaria_vesca	FvH4_4g28540 FvH4_4g28541 FvH4_4g28542 FvH4_4g28543 FvH4_4g28551 FvH4_6g45700
malus_domestica	MD09G1080800.v1.1 MD13G1051500.v1.1 MD13G1051600.v1.1 MD13G1051800.v1.1 MD16G1057900.v1.1
prunus_persica	Prupe.1G300200_v2.0.a1 Prupe.1G300300_v2.0.a1 Prupe.1G300400_v2.0.a1 Prupe.3G243200_v2.0.a1
pyrus_communis	pycom09g00720 pycom13g04570 pycom13g04590 pycom13g04600 pycom13g04610 pycom16g05070
rosa_chinensis	RchiOBHm_Chr2g0163851 RchiOBHm_Chr4g0436581 RchiOBHm_Chr4g0436641
rosa_laevigata	RLG00000006506 RLG00000006509
rosa_multiflora	Rmu_sc0003130.1_g000009 Rmu_sc0003130.1_g000016
rosa_roxburghii	Rroxscaffold_1G00028970 Rroxscaffold_2G00086960 Rroxscaffold_5G00377710
rosa_rugosa	Rorug02G0505000 Rorug04G0294800
rosa_samantha	Rh2AG573000 Rh2BG583700 Rh2CG554600 Rh2CG554700 Rh2DG593200 Rh4AG349300 Rh4BG357700 Rh4BG358000 Rh4CG372100 Rh4CG372200 Rh4CG372400 Rh4DG351700 Rh4DG351900 Rh4DG352200 Rh5AG340700
rosa_wichuraiana	Rw2G047380 Rw4G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	600
AclWI	GGATC	2 cut(s)	141, 721
AcoI	YGGCCR	2 cut(s)	226, 239
AcsI	RAATTY	2 cut(s)	28, 468
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	3 cut(s)	261, 482, 949
AfiI	CCNNNNNNNGG	3 cut(s)	21, 32, 541
AflIII	ACRYGT	1 cut(s)	912
AgsI	TTSAA	2 cut(s)	403, 784
AjiI	CACGTC	1 cut(s)	103
AjnI	CCWGG	2 cut(s)	274, 307
AjuI	GAANNNNNNNTTGG	2 cut(s)	957, 989
AluBI	AGCT	4 cut(s)	272, 569, 630, 968
AluI	AGCT	4 cut(s)	272, 569, 630, 968
Alw21I	GWGCWC	2 cut(s)	48, 632
Alw26I	GTCTC	1 cut(s)	439
AlwI	GGATC	2 cut(s)	141, 721
AoxI	GGCC	4 cut(s)	23, 226, 239, 301
ApeKI	GCWGC	3 cut(s)	269, 412, 978
ApoI	RAATTY	2 cut(s)	28, 468
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	2 cut(s)	23, 301
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	3 cut(s)	225, 617, 937
BaeI	ACNNNNGTAYC	2 cut(s)	87, 120
BalI	TGGCCA	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	632
Bbv12I	GWGCWC	2 cut(s)	48, 632
BbvI	GCAGC	3 cut(s)	281, 424, 965
BccI	CCATC	3 cut(s)	453, 629, 916
BciT130I	CCWGG	2 cut(s)	276, 309
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	439
BfaI	CTAG	1 cut(s)	263
BfmI	CTRYAG	1 cut(s)	979
BfoI	RGCGCY	1 cut(s)	11
BisI	GCNGC	3 cut(s)	270, 413, 979
BlsI	GCNGC	3 cut(s)	271, 414, 980
Bme1390I	CCNGG	3 cut(s)	17, 276, 309
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	23, 301
BmrFI	CCNGG	3 cut(s)	17, 276, 309
BmsI	GCATC	1 cut(s)	514
BpmI	CTGGAG	2 cut(s)	258, 470
BpuMI	CCSGG	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	15, 236
BsaWI	WCCGGW	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	954, 984
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 32, 541
Bse118I	RCCGGY	1 cut(s)	228
Bse1I	ACTGG	2 cut(s)	453, 940
Bse3DI	GCAATG	1 cut(s)	431
BseBI	CCWGG	2 cut(s)	276, 309
BseDI	CCNNGG	2 cut(s)	15, 236
BseGI	GGATG	4 cut(s)	70, 89, 529, 733
BseLI	CCNNNNNNNGG	3 cut(s)	21, 32, 541
BseMI	GCAATG	1 cut(s)	431
BseMII	CTCAG	3 cut(s)	137, 153, 333
BseNI	ACTGG	2 cut(s)	453, 940
BseRI	GAGGAG	1 cut(s)	660
BseXI	GCAGC	3 cut(s)	281, 424, 965
BseYI	CCCAGC	1 cut(s)	722
BsgI	GTGCAG	1 cut(s)	288
Bsh1285I	CGRYCG	1 cut(s)	299
BshFI	GGCC	4 cut(s)	25, 228, 241, 303
BsiEI	CGRYCG	1 cut(s)	299
BsiHKAI	GWGCWC	2 cut(s)	48, 632
BsiSI	CCGG	3 cut(s)	17, 33, 229
BslFI	GGGAC	1 cut(s)	923
BslI	CCNNNNNNNGG	3 cut(s)	21, 32, 541
BsmAI	GTCTC	1 cut(s)	439
BsmFI	GGGAC	1 cut(s)	923
BsnI	GGCC	4 cut(s)	25, 228, 241, 303
Bsp1286I	GDGCHC	2 cut(s)	48, 632
Bsp143I	GATC	4 cut(s)	133, 296, 713, 807
Bsp19I	CCATGG	1 cut(s)	236
BspANI	GGCC	4 cut(s)	25, 228, 241, 303
BspCNI	CTCAG	3 cut(s)	136, 152, 334
BspHI	TCATGA	2 cut(s)	73, 583
BspMAI	CTGCAG	1 cut(s)	983
BspPI	GGATC	2 cut(s)	141, 721
BsrDI	GCAATG	1 cut(s)	431
BsrFI	RCCGGY	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	453, 940
BssAI	RCCGGY	1 cut(s)	228
BssECI	CCNNGG	2 cut(s)	15, 236
BssMI	GATC	4 cut(s)	133, 296, 713, 807
BssT1I	CCWWGG	1 cut(s)	236
Bst2UI	CCWGG	2 cut(s)	276, 309
Bst4CI	ACNGT	4 cut(s)	371, 611, 859, 903
Bst6I	CTCTTC	2 cut(s)	753, 779
BstC8I	GCNNGC	1 cut(s)	720
BstDEI	CTNAG	3 cut(s)	123, 139, 342
BstDSI	CCRYGG	1 cut(s)	236
BstEII	GGTNACC	1 cut(s)	231
BstF5I	GGATG	4 cut(s)	70, 89, 529, 733
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	4 cut(s)	136, 299, 716, 810
BstMAI	GTCTC	1 cut(s)	439
BstMBI	GATC	4 cut(s)	133, 296, 713, 807
BstMCI	CGRYCG	1 cut(s)	299
BstMWI	GCNNNNNNNGC	1 cut(s)	421
BstNI	CCWGG	2 cut(s)	276, 309
BstNSI	RCATGY	2 cut(s)	433, 916
BstPI	GGTNACC	1 cut(s)	231
BstSCI	CCNGG	3 cut(s)	15, 274, 307
BstSFI	CTRYAG	1 cut(s)	979
BstV1I	GCAGC	3 cut(s)	281, 424, 965
BstX2I	RGATCY	1 cut(s)	133
BstXI	CCANNNNNNTGG	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	4 cut(s)	25, 228, 241, 303
BtgI	CCRYGG	1 cut(s)	236
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	4 cut(s)	70, 89, 529, 733
BtsIMutI	CAGTG	2 cut(s)	367, 933
Cac8I	GCNNGC	1 cut(s)	720
CciI	TCATGA	2 cut(s)	73, 583
CfoI	GCGC	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	23, 301
Csp6I	GTAC	3 cut(s)	260, 481, 948
CviAII	CATG	9 cut(s)	50, 74, 218, 237, 430, 584, 616, 670, 913
CviQI	GTAC	3 cut(s)	260, 481, 948
DdeI	CTNAG	3 cut(s)	123, 139, 342
DpnI	GATC	4 cut(s)	135, 298, 715, 809
DpnII	GATC	4 cut(s)	133, 296, 713, 807
EaeI	YGGCCR	2 cut(s)	226, 239
Eam1104I	CTCTTC	2 cut(s)	753, 779
EarI	CTCTTC	2 cut(s)	753, 779
Ecl136II	GAGCTC	1 cut(s)	630
Eco130I	CCWWGG	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	632
Eco53kI	GAGCTC	1 cut(s)	630
Eco57I	CTGAAG	1 cut(s)	75
Eco91I	GGTNACC	1 cut(s)	231
EcoICRI	GAGCTC	1 cut(s)	630
EcoO65I	GGTNACC	1 cut(s)	231
EcoRII	CCWGG	2 cut(s)	274, 307
EcoT14I	CCWWGG	1 cut(s)	236
EcoT22I	ATGCAT	1 cut(s)	431
EcoT38I	GRGCYC	1 cut(s)	632
ErhI	CCWWGG	1 cut(s)	236
FaeI	CATG	9 cut(s)	53, 77, 221, 240, 433, 587, 619, 673, 916
FaqI	GGGAC	1 cut(s)	923
FatI	CATG	9 cut(s)	49, 73, 217, 236, 429, 583, 615, 669, 912
Fnu4HI	GCNGC	3 cut(s)	270, 413, 979
FokI	GGATG	4 cut(s)	77, 96, 536, 740
FriOI	GRGCYC	1 cut(s)	632
Fsp4HI	GCNGC	3 cut(s)	270, 413, 979
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	3 cut(s)	270, 413, 979
GsaI	CCCAGC	1 cut(s)	726
GsuI	CTGGAG	2 cut(s)	258, 470
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	4 cut(s)	25, 228, 241, 303
HapII	CCGG	3 cut(s)	17, 33, 229
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	9 cut(s)	53, 77, 221, 240, 433, 587, 619, 673, 916
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HincII	GTYRAC	1 cut(s)	888
HindII	GTYRAC	1 cut(s)	888
HinfI	GANTC	5 cut(s)	59, 70, 279, 928, 985
HpaII	CCGG	3 cut(s)	17, 33, 229
HphI	GGTGA	3 cut(s)	225, 617, 937
Hpy166II	GTNNAC	1 cut(s)	888
Hpy188I	TCNGA	5 cut(s)	64, 126, 157, 343, 634
Hpy188III	TCNNGA	3 cut(s)	74, 188, 584
Hpy8I	GTNNAC	1 cut(s)	888
HpyAV	CCTTC	5 cut(s)	14, 184, 314, 386, 482
HpyCH4III	ACNGT	4 cut(s)	371, 611, 859, 903
HpyCH4IV	ACGT	4 cut(s)	102, 258, 600, 946
HpyCH4V	TGCA	3 cut(s)	269, 429, 981
HpyF10VI	GCNNNNNNNGC	1 cut(s)	421
HpyF3I	CTNAG	3 cut(s)	123, 139, 342
HpySE526I	ACGT	4 cut(s)	102, 258, 600, 946
Hsp92II	CATG	9 cut(s)	53, 77, 221, 240, 433, 587, 619, 673, 916
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	4 cut(s)	133, 296, 713, 807
LmnI	GCTCC	4 cut(s)	51, 277, 451, 697
Lsp1109I	GCAGC	3 cut(s)	281, 424, 965
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	4 cut(s)	102, 258, 600, 946
MaeIII	GTNAC	5 cut(s)	231, 605, 818, 853, 990
MalI	GATC	4 cut(s)	135, 298, 715, 809
MboI	GATC	4 cut(s)	133, 296, 713, 807
MboII	GAAGA	5 cut(s)	68, 104, 770, 796, 883
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	2 cut(s)	48, 632
MlsI	TGGCCA	1 cut(s)	241
MluCI	AATT	4 cut(s)	28, 468, 675, 801
MluNI	TGGCCA	1 cut(s)	241
MlyI	GAGTC	2 cut(s)	79, 273
MmeI	TCCRAC	2 cut(s)	124, 691
MnlI	CCTC	7 cut(s)	132, 337, 535, 638, 761, 780, 818
Mox20I	TGGCCA	1 cut(s)	241
Mph1103I	ATGCAT	1 cut(s)	431
MscI	TGGCCA	1 cut(s)	241
MseI	TTAA	2 cut(s)	407, 624
MslI	CAYNNNNRTG	1 cut(s)	78
Msp20I	TGGCCA	1 cut(s)	241
MspI	CCGG	3 cut(s)	17, 33, 229
MspR9I	CCNGG	3 cut(s)	17, 276, 309
MvaI	CCWGG	2 cut(s)	276, 309
MwoI	GCNNNNNNNGC	1 cut(s)	421
NciI	CCSGG	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	236
NdeII	GATC	4 cut(s)	133, 296, 713, 807
NlaIII	CATG	9 cut(s)	53, 77, 221, 240, 433, 587, 619, 673, 916
NmuCI	GTSAC	3 cut(s)	231, 605, 818
NsiI	ATGCAT	1 cut(s)	431
NspI	RCATGY	2 cut(s)	433, 916
PagI	TCATGA	2 cut(s)	73, 583
PciI	ACATGT	1 cut(s)	912
PcsI	WCGNNNNNNNCGW	1 cut(s)	855
PfeI	GAWTC	3 cut(s)	59, 928, 985
PfoI	TCCNGGA	1 cut(s)	274
PkrI	GCNGC	3 cut(s)	271, 414, 980
Ple19I	CGATCG	1 cut(s)	299
PleI	GAGTC	2 cut(s)	78, 273
PpsI	GAGTC	2 cut(s)	78, 273
PscI	ACATGT	1 cut(s)	912
Psp124BI	GAGCTC	1 cut(s)	632
Psp1406I	AACGTT	1 cut(s)	600
Psp6I	CCWGG	2 cut(s)	274, 307
PspEI	GGTNACC	1 cut(s)	231
PspFI	CCCAGC	1 cut(s)	722
PspGI	CCWGG	2 cut(s)	274, 307
PspPI	GGNCC	2 cut(s)	23, 301
PstI	CTGCAG	1 cut(s)	983
PsuI	RGATCY	1 cut(s)	133
PvuI	CGATCG	1 cut(s)	299
RsaI	GTAC	3 cut(s)	261, 482, 949
RsaNI	GTAC	3 cut(s)	260, 481, 948
RseI	CAYNNNNRTG	1 cut(s)	78
SacI	GAGCTC	1 cut(s)	632
SaqAI	TTAA	2 cut(s)	407, 624
SatI	GCNGC	3 cut(s)	270, 413, 979
Sau3AI	GATC	4 cut(s)	133, 296, 713, 807
Sau96I	GGNCC	2 cut(s)	23, 301
SchI	GAGTC	2 cut(s)	79, 273
ScrFI	CCNGG	3 cut(s)	17, 276, 309
SduI	GDGCHC	2 cut(s)	48, 632
SfaNI	GCATC	1 cut(s)	514
SfcI	CTRYAG	1 cut(s)	979
SmiMI	CAYNNNNRTG	1 cut(s)	78
Sse9I	AATT	4 cut(s)	28, 468, 675, 801
SspMI	CTAG	1 cut(s)	263
SstI	GAGCTC	1 cut(s)	632
StyD4I	CCNGG	3 cut(s)	15, 274, 307
StyI	CCWWGG	1 cut(s)	236
TaaI	ACNGT	4 cut(s)	371, 611, 859, 903
TaiI	ACGT	4 cut(s)	105, 261, 603, 949
TaqI	TCGA	2 cut(s)	315, 806
TasI	AATT	4 cut(s)	28, 468, 675, 801
TatI	WGTACW	1 cut(s)	480
TfiI	GAWTC	3 cut(s)	59, 928, 985
Tru1I	TTAA	2 cut(s)	407, 624
Tru9I	TTAA	2 cut(s)	407, 624
TscAI	CASTG	2 cut(s)	374, 940
TseFI	GTSAC	3 cut(s)	231, 605, 818
TseI	GCWGC	3 cut(s)	269, 412, 978
Tsp45I	GTSAC	3 cut(s)	231, 605, 818
TspDTI	ATGAA	9 cut(s)	166, 434, 453, 501, 604, 686, 704, 744, 890
TspRI	CASTG	2 cut(s)	374, 940
XapI	RAATTY	2 cut(s)	28, 468
XceI	RCATGY	2 cut(s)	433, 916
XspI	CTAG	1 cut(s)	263
Zsp2I	ATGCAT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.